ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61o03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB 32 1.9
2PLIGB_ELAQU (Q9PWI3) Phospholipase A2 inhibitor gamma subunit B ... 30 5.4
3MT_EISFO (P81695) Cadmium-metallothionein (MT) (Fragment) 29 9.3

>RSSB_SERMA (Q8GP20) Swarming motility regulation protein rssB|
          Length = 219

 Score = 31.6 bits (70), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%)
 Frame = +1

Query: 94  LSELLAFPILTSTIVAANHLPRLFASLTDQLRSLY*LKLNHHCNKSNTLLYYARSEPYII 273
           L++  A P L S + A N     FAS T  L +LY   +NH     N LL  ++ E +++
Sbjct: 99  LAKPFALPELISRVKAVNRRMAGFASQTWSLGALYLDPVNHQVMLDNELLMLSKKEYHLL 158

Query: 274 N 276
           +
Sbjct: 159 H 159



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>PLIGB_ELAQU (Q9PWI3) Phospholipase A2 inhibitor gamma subunit B precursor|
           (PLI-gamma B)
          Length = 200

 Score = 30.0 bits (66), Expect = 5.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
 Frame = +2

Query: 353 RKCCTCDNCK-MPPPVLPGAHKMPSGDQ 433
           R CCT D C+ +PPPVL      P+G Q
Sbjct: 92  RACCTGDECQTLPPPVLEPQVNRPNGLQ 119



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>MT_EISFO (P81695) Cadmium-metallothionein (MT) (Fragment)|
          Length = 75

 Score = 29.3 bits (64), Expect = 9.3
 Identities = 15/49 (30%), Positives = 21/49 (42%), Gaps = 1/49 (2%)
 Frame = +2

Query: 362 CTCDNCK-MPPPVLPGAHKMPSGDQGVRKC*RGPFKIRASTRCTVAEMA 505
           C C NC+ +    LPG  K+   D    KC     K  A+ +C+    A
Sbjct: 17  CCCTNCRCLKSECLPGCKKLCCADAEKGKCGNAGCKCGAACKCSAGSCA 65


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,551,159
Number of Sequences: 219361
Number of extensions: 1749502
Number of successful extensions: 3809
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3809
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5367617986
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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