ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61o03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chr... 42 2.1
2gb|AC005900.1|AC005900 Homo sapiens chromosome 17, clone hRPK.99... 42 2.1
3gb|AE016830.1| Enterococcus faecalis V583, complete genome 42 2.1
4ref|XM_478772.1| Oryza sativa (japonica cultivar-group), mRNA 40 8.2
5gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete g... 40 8.2
6gb|AC153123.10| Medicago truncatula clone mte1-72m7, complete se... 40 8.2
7emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chro... 40 8.2
8emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on ch... 40 8.2
9emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 o... 40 8.2
10gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, comp... 40 8.2
11gb|AC116422.1| Homo sapiens BAC clone RP11-401G6 from 4, complet... 40 8.2
12gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, comp... 40 8.2
13gb|AC008925.4| Homo sapiens chromosome 5 clone CTD-2284O10, comp... 40 8.2
14ref|NM_077638.2| Caenorhabditis elegans C23H4.4 (carboxyesterase... 40 8.2
15gb|AE002098.2| Neisseria meningitidis MC58, complete genome 40 8.2
16dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
17gb|AC097376.3| Homo sapiens BAC clone RP11-83A24 from 4, complet... 40 8.2
18gb|AC006369.3| Homo sapiens BAC clone RP11-278G12 from 2, comple... 40 8.2
19dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic D... 40 8.2
20dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 8.2
21dbj|AP002783.3| Homo sapiens genomic DNA, chromosome 11q, clone:... 40 8.2

>emb|AL845440.23| Mouse DNA sequence from clone RP23-294B7 on chromosome 2, complete
             sequence
          Length = 188464

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 497   gaaatggcatgctttatttgt 517
             |||||||||||||||||||||
Sbjct: 17708 gaaatggcatgctttatttgt 17728



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>gb|AC005900.1|AC005900 Homo sapiens chromosome 17, clone hRPK.998_F_8, complete sequence
          Length = 175066

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 495    ctgaaatggcatgctttattt 515
              |||||||||||||||||||||
Sbjct: 123017 ctgaaatggcatgctttattt 122997



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>gb|AE016830.1| Enterococcus faecalis V583, complete genome
          Length = 3218031

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 24      aaccagctctacaaaagaaaa 44
               |||||||||||||||||||||
Sbjct: 3010309 aaccagctctacaaaagaaaa 3010289



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>ref|XM_478772.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1227

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 aacaatagttgctgcaaatc 148
           ||||||||||||||||||||
Sbjct: 580 aacaatagttgctgcaaatc 599



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>gb|DQ486030.1| Antheraea pernyi nucleopolyhedrovirus, complete genome
          Length = 126479

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 369    gcgacaattgcaaaatgcca 388
              ||||||||||||||||||||
Sbjct: 104298 gcgacaattgcaaaatgcca 104279



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>gb|AC153123.10| Medicago truncatula clone mte1-72m7, complete sequence
          Length = 105895

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 194   tatactagttaaaattaaac 213
             ||||||||||||||||||||
Sbjct: 39717 tatactagttaaaattaaac 39698



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>emb|AL392106.4| Human DNA sequence from clone RP11-563H8 on chromosome 9 Contains a
             novel gene (FLJ20808) and a ribosomal protein L23a
             (RPL23A) pseudogene, complete sequence
          Length = 150771

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    ccagctctacaaaagaaaaa 45
             ||||||||||||||||||||
Sbjct: 18541 ccagctctacaaaagaaaaa 18560



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>emb|AL359181.28| Human DNA sequence from clone RP11-392N11 on chromosome 9 Contains the
             3' end of the PHF2 gene for PHD finger protein 2 (GRC5,
             KIAA0662), complete sequence
          Length = 165415

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 330   tctggaatgaggtgatttca 349
             ||||||||||||||||||||
Sbjct: 86459 tctggaatgaggtgatttca 86478



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>emb|AL034561.5|HS692C8 Human DNA sequence from clone RP4-692C8 on chromosome 20p11.22-12.2
             Contains GSSs and STSs, complete sequence
          Length = 125698

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 555   aagcttttcattgagcttgt 574
             ||||||||||||||||||||
Sbjct: 13191 aagcttttcattgagcttgt 13210



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>gb|AC107965.4| Homo sapiens chromosome 8, clone CTD-2332A4, complete sequence
          Length = 112032

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 499   aatggcatgctttatttgtgagaa 522
             ||||| ||||||||||||||||||
Sbjct: 17079 aatggtatgctttatttgtgagaa 17102



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>gb|AC116422.1| Homo sapiens BAC clone RP11-401G6 from 4, complete sequence
          Length = 61946

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 341   gtgatttcatgaagaaaatg 360
             ||||||||||||||||||||
Sbjct: 58677 gtgatttcatgaagaaaatg 58658



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>gb|AC021760.9| Homo sapiens chromosome 8, clone RP11-433L7, complete sequence
          Length = 183059

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 499   aatggcatgctttatttgtgagaa 522
             ||||| ||||||||||||||||||
Sbjct: 21399 aatggtatgctttatttgtgagaa 21376



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>gb|AC008925.4| Homo sapiens chromosome 5 clone CTD-2284O10, complete sequence
          Length = 131990

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 338   gaggtgatttcatgaagaaa 357
             ||||||||||||||||||||
Sbjct: 73617 gaggtgatttcatgaagaaa 73636



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>ref|NM_077638.2| Caenorhabditis elegans C23H4.4 (carboxyesterase) mRNA, complete cds
          Length = 1836

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 43  aaacatgcggcgctgtattt 62
           ||||||||||||||||||||
Sbjct: 302 aaacatgcggcgctgtattt 283



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>gb|AE002098.2| Neisseria meningitidis MC58, complete genome
          Length = 2272360

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 356     aaatgttgcacctgcgacaattgcaaaa 383
               ||||||||||| |||||||| |||||||
Sbjct: 1425201 aaatgttgcacttgcgacaactgcaaaa 1425174



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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 129      aacaatagttgctgcaaatc 148
                ||||||||||||||||||||
Sbjct: 22951996 aacaatagttgctgcaaatc 22952015



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>gb|AC097376.3| Homo sapiens BAC clone RP11-83A24 from 4, complete sequence
          Length = 145395

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 58     tatttgtcttctgcagcaca 77
              ||||||||||||||||||||
Sbjct: 101498 tatttgtcttctgcagcaca 101517



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>gb|AC006369.3| Homo sapiens BAC clone RP11-278G12 from 2, complete sequence
          Length = 188359

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 339   aggtgatttcatgaagaaaa 358
             ||||||||||||||||||||
Sbjct: 43764 aggtgatttcatgaagaaaa 43783



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>dbj|AP005908.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1121_A05
          Length = 172668

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 129   aacaatagttgctgcaaatc 148
             ||||||||||||||||||||
Sbjct: 27210 aacaatagttgctgcaaatc 27229



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>dbj|AK065242.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002I12, full
           insert sequence
          Length = 1226

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 aacaatagttgctgcaaatc 148
           ||||||||||||||||||||
Sbjct: 580 aacaatagttgctgcaaatc 599



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>dbj|AP002783.3| Homo sapiens genomic DNA, chromosome 11q, clone:RP11-664H7, complete
              sequence
          Length = 167026

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 343    gatttcatgaagaaaatgttgcac 366
              ||||||||||||||||||| ||||
Sbjct: 145424 gatttcatgaagaaaatgtggcac 145401


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,105,733
Number of Sequences: 3902068
Number of extensions: 6105733
Number of successful extensions: 108514
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108420
Number of HSP's gapped (non-prelim): 94
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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