ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62c24
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase 1068 0.0
2emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene 426 e-116
3gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence 385 e-103
4gb|AY104014.1| Zea mays PCO103489 mRNA sequence 385 e-103
5ref|XM_479446.1| Oryza sativa (japonica cultivar-group), mRNA 339 6e-90
6dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
7dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clon... 339 6e-90
8gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, ... 216 6e-53
9dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
10dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic D... 94 6e-16
11ref|NM_180872.1| Arabidopsis thaliana xylose isomerase AT5G57655... 44 0.49
12ref|NM_125147.3| Arabidopsis thaliana xylose isomerase AT5G57655... 44 0.49
13gb|AY136469.1| Arabidopsis thaliana expressed protein; supported... 44 0.49
14dbj|AK221134.1| Arabidopsis thaliana mRNA for xylose isomerase, ... 44 0.49
15gb|BT006607.1| Arabidopsis thaliana At5g57655 mRNA, complete cds 44 0.49
16emb|BX834102.1|CNS0A1T5 Arabidopsis thaliana Full-length cDNA Co... 44 0.49
17emb|BX831279.1|CNS09ZCJ Arabidopsis thaliana Full-length cDNA Co... 44 0.49
18emb|BX833713.1|CNS09Z3Y Arabidopsis thaliana Full-length cDNA Co... 44 0.49
19gb|AY084958.1| Arabidopsis thaliana clone 122798 mRNA, complete ... 44 0.49
20gb|AY084800.1| Arabidopsis thaliana clone 118282 mRNA, complete ... 44 0.49
21gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, com... 42 1.9
22gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete se... 42 1.9
23gb|AF027207.2|AF027207 Homo sapiens chromosome 21 clone cosmid D... 42 1.9
24dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete g... 42 1.9
25emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 ... 42 1.9
26emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067 42 1.9
27gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, com... 40 7.6
28gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex,... 40 7.6
29gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete se... 40 7.6
30ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus simila... 40 7.6
31emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h1... 40 7.6
32gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Canc... 40 7.6
33dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, c... 40 7.6
34gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence 40 7.6
35gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswel... 40 7.6
36dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138 40 7.6
37gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, comple... 40 7.6
38gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-12... 40 7.6
39gb|AC007034.4|AC007034 Homo sapiens BAC clone RP11-99M1 from Y, ... 40 7.6
40emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o1... 40 7.6
41gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48... 40 7.6
42emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chr... 40 7.6 
>emb|X95257.1|HVXYLISOP H.vulgare mRNA for xylose isomerase
          Length = 1710

 Score = 1068 bits (539), Expect = 0.0
 Identities = 557/563 (98%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccgtgttgaagaacgagtttaattttgatataaggttacattattttcagctccacgc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 ttccgtgttgaagaacgagtttaattttgatataaggttacattattttcagctccacgc 1643

                                                                        
Query: 61   agtttgtttacagggttcattgcatggaggcctaactatagaacatcgcctgtagtgacg 120
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 agtttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacg 1583

                                                                        
Query: 121  aggacggctgggcgttccaagggcgcgctcttgcttttttattcctagaaccgtgggccg 180
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1582 aggacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccg 1523

                                                                        
Query: 181  ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 240
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1522 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 1463

                                                                        
Query: 241  ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 300
            |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 1462 ttggctcgccccactccaaggccttcttttctagcgtttcaaagtcgcccttcccagcct 1403

                                                                        
Query: 301  cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1402 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 1343

                                                                        
Query: 361  gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcc 420
            ||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct: 1342 gggaaccatcctcaatcagcttgacaacattgcggcggccgcgggccatggtgtccatcc 1283

                                                                        
Query: 421  cagagatatgggcaataaacaggtcctcaacatcagtactctccctccgcaatttggcgt 480
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 cagagatatgggcaataaacaggtcctcaacatcagtactctccctccgcaatttggcgt 1223

                                                                        
Query: 481  caaagttgaagccaccaggcgcaagtccatcattcttaactacacttgacataatcaagg 540
             |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1222 aaaagttgaagccaccaggcgcaagtccatcattcttaactacacttgacataatcaagg 1163

                                   
Query: 541  tagcttctgaaatgtctgtaagg 563
            |||||||||||||||||||||||
Sbjct: 1162 tagcttctgaaatgtctgtaagg 1140
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>emb|X95256.1|HVXYLISOG H.vulgare xylose isomerase gene
          Length = 4473

 Score =  426 bits (215), Expect = e-116
 Identities = 221/223 (99%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttccgtgttgaagaacgagtttaattttgatataaggttacattattttcagctccacgc 60
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4465 ttccgtgttgaagaacgagtttaattttgatataaggttacattattttcagctccacgc 4406

                                                                        
Query: 61   agtttgtttacagggttcattgcatggaggcctaactatagaacatcgcctgtagtgacg 120
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4405 agtttgtttacagggttcactgcatggaggcctaactatagaacatcgcctgtagtgacg 4346

                                                                        
Query: 121  aggacggctgggcgttccaagggcgcgctcttgcttttttattcctagaaccgtgggccg 180
            |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 4345 aggacggctgggcgttccaaggtcgcgctcttgcttttttattcctagaaccgtgggccg 4286

                                                       
Query: 181  ccatctacagagcggattggaacagcatctcagccaattcctg 223
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4285 ccatctacagagcggattggaacagcatctcagccaattcctg 4243



 Score =  184 bits (93), Expect = 2e-43
 Identities = 99/101 (98%)
 Strand = Plus / Minus

                                                                        
Query: 370  cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcccagagatat 429
            |||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 3818 cctcaatcagcttgacaacattgcggcggccgcgggccatggtgtccatcccagagatat 3759

                                                     
Query: 430  gggcaataaacaggtcctcaacatcagtactctccctccgc 470
            |||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 gggcaataaacaggtcctcaacatcagtactctccctccgc 3718



 Score =  153 bits (77), Expect = 7e-34
 Identities = 80/81 (98%)
 Strand = Plus / Minus

                                                                        
Query: 220  cctgtttgcccgatggaacggttggctcgccccactccaagaccttcttttctagcgttt 279
            ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 4135 cctgtttgcccgatggaacggttggctcgccccactccaaggccttcttttctagcgttt 4076

                                 
Query: 280  caaagtcgcccttcccagcct 300
            |||||||||||||||||||||
Sbjct: 4075 caaagtcgcccttcccagcct 4055



 Score =  149 bits (75), Expect = 1e-32
 Identities = 75/75 (100%)
 Strand = Plus / Minus

                                                                        
Query: 298  cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3976 cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 3917

                           
Query: 358  ccagggaaccatcct 372
            |||||||||||||||
Sbjct: 3916 ccagggaaccatcct 3902



 Score =  105 bits (53), Expect = 2e-19
 Identities = 53/53 (100%)
 Strand = Plus / Minus

                                                                 
Query: 511  cattcttaactacacttgacataatcaaggtagcttctgaaatgtctgtaagg 563
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3462 cattcttaactacacttgacataatcaaggtagcttctgaaatgtctgtaagg 3410



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 41/42 (97%)
 Strand = Plus / Minus

                                                      
Query: 470  caatttggcgtcaaagttgaagccaccaggcgcaagtccatc 511
            ||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 3629 caatttggcgtaaaagttgaagccaccaggcgcaagtccatc 3588
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>gb|BT018392.1| Zea mays clone EL01N0319D07.d mRNA sequence
          Length = 1548

 Score =  385 bits (194), Expect = e-103
 Identities = 320/362 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 257
            |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| 
Sbjct: 1260 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1201

                                                                        
Query: 258  aagaccttcttttctagcgtttcaaagtcgcccttcccagcctcgatcatggcaccaatc 317
            |  ||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||
Sbjct: 1200 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1141

                                                                        
Query: 318  tcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagggaaccatcctcaatc 377
            ||| | |||||||||||||| || ||||| ||||| || || ||||||||||||||||||
Sbjct: 1140 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatcctcaatc 1081

                                                                        
Query: 378  agcttggcaacattgcggaggccgcgggccatggtgtccatcccagagatatgggcaata 437
            ||||||||||| || || ||||| || |||| ||||||||| || ||||||||||||| |
Sbjct: 1080 agcttggcaacgttacgaaggccacgtgccagggtgtccattccggagatatgggcaaga 1021

                                                                        
Query: 438  aacaggtcctcaacatcagtactctccctccgcaatttggcgtcaaagttgaagccacca 497
            |||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 1020 aacatgtcctcaacatcagtactttccctccgcaatttggcatcaaagttgaaaccacca 961

                                                                        
Query: 498  ggcgcaagtccatcattcttaactacacttgacataatcaaggtagcttctgaaatgtct 557
            || ||||||||| |||||||||||||||||||||||| ||| ||||| |||| |||||||
Sbjct: 960  ggtgcaagtccaccattcttaactacacttgacataaccaaagtagcctctgcaatgtct 901

              
Query: 558  gt 559
            ||
Sbjct: 900  gt 899
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>gb|AY104014.1| Zea mays PCO103489 mRNA sequence
          Length = 2135

 Score =  385 bits (194), Expect = e-103
 Identities = 320/362 (88%)
 Strand = Plus / Minus

                                                                        
Query: 198  tggaacagcatctcagccaattcctgtttgcccgatggaacggttggctcgccccactcc 257
            |||||||| ||||| |||| |||||||||||| |||| ||| || ||||| |||||||| 
Sbjct: 1838 tggaacagaatctccgccagttcctgtttgccggatgcaacagtgggctcaccccactct 1779

                                                                        
Query: 258  aagaccttcttttctagcgtttcaaagtcgcccttcccagcctcgatcatggcaccaatc 317
            |  ||||||||||||||||| |||||||| || |||||||||||||||| ||||||||||
Sbjct: 1778 agaaccttcttttctagcgtctcaaagtctcctttcccagcctcgatcaaggcaccaatc 1719

                                                                        
Query: 318  tcagtgtcaaagctctggtagcgtttgcgtacaagctcgtccagggaaccatcctcaatc 377
            ||| | |||||||||||||| || ||||| ||||| || || |||||||||||| |||||
Sbjct: 1718 tcactatcaaagctctggtaccgcttgcggacaagatcatctagggaaccatccccaatc 1659

                                                                        
Query: 378  agcttggcaacattgcggaggccgcgggccatggtgtccatcccagagatatgggcaata 437
            ||||||||||| || |||||||| || |||| ||||||||| || ||||||||||||| |
Sbjct: 1658 agcttggcaacgttacggaggccacgtgccagggtgtccattccggagatatgggcaaga 1599

                                                                        
Query: 438  aacaggtcctcaacatcagtactctccctccgcaatttggcgtcaaagttgaagccacca 497
            |||| |||||||||||||||||| ||||||||||||||||| ||||||||||| ||||||
Sbjct: 1598 aacatgtcctcaacatcagtactttccctccgcaatttggcatcaaagttgaaaccacca 1539

                                                                        
Query: 498  ggcgcaagtccatcattcttaactacacttgacataatcaaggtagcttctgaaatgtct 557
            || ||||||||| |||||||||||||||||||||||| ||| ||||| |||| |||||||
Sbjct: 1538 ggtgcaagtccaccattcttaactacacttgacataaccaaagtagcctctgcaatgtct 1479

              
Query: 558  gt 559
            ||
Sbjct: 1478 gt 1477
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>ref|XM_479446.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1760

 Score =  339 bits (171), Expect = 6e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                        
Query: 181  ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 240
            ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491

                                                                        
Query: 241  ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 300
            | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431

                                                                        
Query: 301  cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 360
            | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371

                                                                        
Query: 361  gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcc 420
            ||||||||||||| ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311

                                                                        
Query: 421  cagagatatgggcaataaacaggtcctcaacatcagtactctccctccgcaatttggcgt 480
            | || ||||| || | ||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactctccctcctcaatttggcat 1251

                                                                        
Query: 481  caaagttgaagccaccaggcgcaagtccatcattcttaactacacttgacataatcaagg 540
            |||||||||| |||||||| ||||| ||| |||||||||| ||||||||||||| ||| |
Sbjct: 1250 caaagttgaatccaccaggtgcaagcccaccattcttaaccacacttgacataaccaaag 1191

                                   
Query: 541  tagcttctgaaatgtctgtaagg 563
            |||| |||||||| |||||||||
Sbjct: 1190 tagcctctgaaatatctgtaagg 1168
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>dbj|AK104085.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-029-F02, full
           insert sequence
          Length = 1177

 Score =  339 bits (171), Expect = 6e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                       
Query: 181 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 240
           ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 960 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 901

                                                                       
Query: 241 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 300
           | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 900 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 841

                                                                       
Query: 301 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 360
           | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 840 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 781

                                                                       
Query: 361 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcc 420
           ||||||||||||| ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 780 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 721

                                                                       
Query: 421 cagagatatgggcaataaacaggtcctcaacatcagtactctccctccgcaatttggcgt 480
           | || ||||| || | ||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 720 ccgatatatgagccagaaacatgtcctcaacatcagtactctccctcctcaatttggcat 661

                                                                       
Query: 481 caaagttgaagccaccaggcgcaagtccatcattcttaactacacttgacataatcaagg 540
           |||||||||| |||||||| ||||| ||| |||||||||| ||||||||||||| ||| |
Sbjct: 660 caaagttgaatccaccaggtgcaagcccaccattcttaaccacacttgacataaccaaag 601

                                  
Query: 541 tagcttctgaaatgtctgtaagg 563
           |||| |||||||| |||||||||
Sbjct: 600 tagcctctgaaatatctgtaagg 578
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>dbj|AK072249.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023001E09, full
            insert sequence
          Length = 1760

 Score =  339 bits (171), Expect = 6e-90
 Identities = 330/383 (86%)
 Strand = Plus / Minus

                                                                        
Query: 181  ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 240
            ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 1550 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 1491

                                                                        
Query: 241  ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 300
            | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 1490 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 1431

                                                                        
Query: 301  cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 360
            | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 1430 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 1371

                                                                        
Query: 361  gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcc 420
            ||||||||||||| ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 1370 gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 1311

                                                                        
Query: 421  cagagatatgggcaataaacaggtcctcaacatcagtactctccctccgcaatttggcgt 480
            | || ||||| || | ||||| |||||||||||||||||||||||||| ||||||||| |
Sbjct: 1310 ccgatatatgagccagaaacatgtcctcaacatcagtactctccctcctcaatttggcat 1251

                                                                        
Query: 481  caaagttgaagccaccaggcgcaagtccatcattcttaactacacttgacataatcaagg 540
            |||||||||| |||||||| ||||| ||| |||||||||| ||||||||||||| ||| |
Sbjct: 1250 caaagttgaatccaccaggtgcaagcccaccattcttaaccacacttgacataaccaaag 1191

                                   
Query: 541  tagcttctgaaatgtctgtaagg 563
            |||| |||||||| |||||||||
Sbjct: 1190 tagcctctgaaatatctgtaagg 1168
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>gb|AF358766.1| Oryza sativa clone Osl369 xylose isomerase mRNA, partial cds
          Length = 415

 Score =  216 bits (109), Expect = 6e-53
 Identities = 235/277 (84%)
 Strand = Plus / Minus

                                                                       
Query: 181 ccatctacagagcggattggaacagcatctcagccaattcctgtttgcccgatggaacgg 240
           ||||||| ||||| | ||||||||| |||||||||| |||||| ||||| ||||||||  
Sbjct: 277 ccatctatagagcagcttggaacagaatctcagccagttcctgcttgccagatggaacaa 218

                                                                       
Query: 241 ttggctcgccccactccaagaccttcttttctagcgtttcaaagtcgcccttcccagcct 300
           | || || ||||||||||  |||||||| ||||| || || ||||| || ||||||||||
Sbjct: 217 tgggttcaccccactccagaaccttcttctctagtgtctcgaagtctcctttcccagcct 158

                                                                       
Query: 301 cgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgtcca 360
           | |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| ||||
Sbjct: 157 caatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcatcca 98

                                                                       
Query: 361 gggaaccatcctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcc 420
           ||||||||||||| ||||||||| ||||||| || ||||||||||| | ||||||||| |
Sbjct: 97  gggaaccatcctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattc 38

                                                
Query: 421 cagagatatgggcaataaacaggtcctcaacatcagt 457
           | || ||||| || | ||||| |||||||||||||||
Sbjct: 37  ccgatatatgagccagaaacatgtcctcaacatcagt 1
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 86/99 (86%)
 Strand = Plus / Plus

                                                                            
Query: 370      cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcccagagatat 429
                |||| ||||||||| ||||||| || ||||||||||| | ||||||||| || || ||||
Sbjct: 28219467 cctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatat 28219526

                                                       
Query: 430      gggcaataaacaggtcctcaacatcagtactctccctcc 468
                | || | ||||| ||||||||||||||||||||||||||
Sbjct: 28219527 gagccagaaacatgtcctcaacatcagtactctccctcc 28219565



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                            
Query: 298      cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 357
                |||| |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |
Sbjct: 28219317 cctcaatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcat 28219376

                               
Query: 358      ccagggaaccatcct 372
                |||||||||||||||
Sbjct: 28219377 ccagggaaccatcct 28219391



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                     
Query: 511      cattcttaactacacttgacataatcaaggtagcttctgaaatgtctgtaagg 563
                |||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 28219801 cattcttaaccacacttgacataaccaaagtagcctctgaaatatctgtaagg 28219853



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 470      caatttggcgtcaaagttgaagccaccaggcgcaag 505
                ||||||||| ||||||||||| |||||||| |||||
Sbjct: 28219667 caatttggcatcaaagttgaatccaccaggtgcaag 28219702
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>dbj|AP004570.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0625E02
          Length = 153921

 Score = 93.7 bits (47), Expect = 6e-16
 Identities = 86/99 (86%)
 Strand = Plus / Plus

                                                                         
Query: 370   cctcaatcagcttggcaacattgcggaggccgcgggccatggtgtccatcccagagatat 429
             |||| ||||||||| ||||||| || ||||||||||| | ||||||||| || || ||||
Sbjct: 75012 cctcgatcagcttgacaacattccgaaggccgcgggctagggtgtccattcccgatatat 75071

                                                    
Query: 430   gggcaataaacaggtcctcaacatcagtactctccctcc 468
             | || | ||||| ||||||||||||||||||||||||||
Sbjct: 75072 gagccagaaacatgtcctcaacatcagtactctccctcc 75110



 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 66/75 (88%)
 Strand = Plus / Plus

                                                                         
Query: 298   cctcgatcatggcaccaatctcagtgtcaaagctctggtagcgtttgcgtacaagctcgt 357
             |||| |||| |||||| |||||| | ||||| ||||||||||| ||||| |||||||| |
Sbjct: 74862 cctcaatcaaggcaccgatctcactatcaaaactctggtagcgcttgcgaacaagctcat 74921

                            
Query: 358   ccagggaaccatcct 372
             |||||||||||||||
Sbjct: 74922 ccagggaaccatcct 74936



 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 48/53 (90%)
 Strand = Plus / Plus

                                                                  
Query: 511   cattcttaactacacttgacataatcaaggtagcttctgaaatgtctgtaagg 563
             |||||||||| ||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct: 75346 cattcttaaccacacttgacataaccaaagtagcctctgaaatatctgtaagg 75398



 Score = 48.1 bits (24), Expect = 0.031
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 470   caatttggcgtcaaagttgaagccaccaggcgcaag 505
             ||||||||| ||||||||||| |||||||| |||||
Sbjct: 75212 caatttggcatcaaagttgaatccaccaggtgcaag 75247
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>ref|NM_180872.1| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant
            AT5G57655.1 mRNA, complete cds
          Length = 1863

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1394 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1357
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>ref|NM_125147.3| Arabidopsis thaliana xylose isomerase AT5G57655 transcript variant
            AT5G57655.2 mRNA, complete cds
          Length = 1902

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1432 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1395
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>gb|AY136469.1| Arabidopsis thaliana expressed protein; supported by full length
            cDNA: Ceres: 122798 (At5g57655) mRNA, complete cds
          Length = 1823

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1430 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1393
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>dbj|AK221134.1| Arabidopsis thaliana mRNA for xylose isomerase, partial cds, clone:
           RAFL22-92-O10
          Length = 886

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 456 gtactctccctccgcaatttggcgtcaaagttgaagcc 493
           |||||||| || |||| ||| |||||||||||||||||
Sbjct: 432 gtactctctcttcgcagtttagcgtcaaagttgaagcc 395
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>gb|BT006607.1| Arabidopsis thaliana At5g57655 mRNA, complete cds
          Length = 1434

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1163 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1126
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>emb|BX834102.1|CNS0A1T5 Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL9ZA09 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 1087

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 456 gtactctccctccgcaatttggcgtcaaagttgaagcc 493
           |||||||| || |||| ||| |||||||||||||||||
Sbjct: 706 gtactctctcttcgcagtttagcgtcaaagttgaagcc 669
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>emb|BX831279.1|CNS09ZCJ Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTLS74ZE05 of Adult vegetative tissue of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1649

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1251 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1214
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>emb|BX833713.1|CNS09Z3Y Arabidopsis thaliana Full-length cDNA Complete sequence from clone
           GSLTSIL72ZD05 of Silique of strain col-0 of Arabidopsis
           thaliana (thale cress)
          Length = 966

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                 
Query: 456 gtactctccctccgcaatttggcgtcaaagttgaagcc 493
           |||||||| || |||| ||| |||||||||||||||||
Sbjct: 568 gtactctctcttcgcagtttagcgtcaaagttgaagcc 531
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>gb|AY084958.1| Arabidopsis thaliana clone 122798 mRNA, complete sequence
          Length = 1649

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1180 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1143
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>gb|AY084800.1| Arabidopsis thaliana clone 118282 mRNA, complete sequence
          Length = 1838

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 34/38 (89%)
 Strand = Plus / Minus

                                                  
Query: 456  gtactctccctccgcaatttggcgtcaaagttgaagcc 493
            |||||||| || |||| ||| |||||||||||||||||
Sbjct: 1394 gtactctctcttcgcagtttagcgtcaaagttgaagcc 1357
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>gb|AC162883.4| Mus musculus chromosome 1, clone RP24-148E21, complete sequence
          Length = 154199

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 305   catggcaccaatctcagtgtcaaag 329
             |||||||||| ||||||||||||||
Sbjct: 84035 catggcaccagtctcagtgtcaaag 84011
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>gb|AC149305.19| Medicago truncatula clone mth2-78k4, complete sequence
          Length = 118017

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 14    aacgagtttaattttgatata 34
             |||||||||||||||||||||
Sbjct: 91024 aacgagtttaattttgatata 91004
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>gb|AF027207.2|AF027207 Homo sapiens chromosome 21 clone cosmid D13C2 map 21q22.2, complete
             sequence
          Length = 37773

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 537   aaggtagcttctgaaatgtct 557
             |||||||||||||||||||||
Sbjct: 24914 aaggtagcttctgaaatgtct 24934
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>dbj|BA000035.2| Corynebacterium efficiens YS-314 DNA, complete genome
          Length = 3147090

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 353     ctcgtccagggaaccatcctc 373
               |||||||||||||||||||||
Sbjct: 1075951 ctcgtccagggaaccatcctc 1075931
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>emb|AJ229042.1|HS229042 Homo sapiens 959 kb contig between AML1 and CBR1 on chromosome 21q22,
              segment 2/3
          Length = 348050

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 537    aaggtagcttctgaaatgtct 557
              |||||||||||||||||||||
Sbjct: 323737 aaggtagcttctgaaatgtct 323717
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>emb|AL163267.2|HS21C067 Homo sapiens chromosome 21 segment HS21C067
          Length = 340000

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 537    aaggtagcttctgaaatgtct 557
              |||||||||||||||||||||
Sbjct: 214340 aaggtagcttctgaaatgtct 214360
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>gb|AC146257.3| Pan troglodytes BAC clone CH251-113A6 from Y, complete sequence
          Length = 174522

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 535    tcaaggtagcttctgaaatg 554
              ||||||||||||||||||||
Sbjct: 155564 tcaaggtagcttctgaaatg 155545
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>gb|BC041267.1| Xenopus laevis actin related protein 2/3 complex, subunit 1A, 41kDa,
            mRNA (cDNA clone MGC:52839 IMAGE:4885217), complete cds
          Length = 1795

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 38   ttacattattttcagctcca 57
            ||||||||||||||||||||
Sbjct: 1510 ttacattattttcagctcca 1529
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>gb|AC127169.13| Medicago truncatula clone mth2-36n3, complete sequence
          Length = 124554

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 35/40 (87%)
 Strand = Plus / Plus

                                                     
Query: 470   caatttggcgtcaaagttgaagccaccaggcgcaagtcca 509
             ||||||||| ||||||||||| ||||| || |||| ||||
Sbjct: 85708 caatttggcatcaaagttgaatccacctggtgcaattcca 85747
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>ref|XM_784544.1| PREDICTED: Strongylocentrotus purpuratus similar to
            Retrovirus-related Pol polyprotein from transposon 297
            (LOC584692), partial mRNA
          Length = 1789

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 43   ttattttcagctccacgcag 62
            ||||||||||||||||||||
Sbjct: 1373 ttattttcagctccacgcag 1354
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>emb|CR936947.2| Medicago truncatula chromosome 5 clone mte1-85h10, COMPLETE SEQUENCE
          Length = 136310

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 10     gaagaacgagtttaattttgatat 33
              |||||| |||||||||||||||||
Sbjct: 131309 gaagaatgagtttaattttgatat 131332
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>gb|AC116303.6| Homo sapiens 3 BAC RP11-276B15 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 51070

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 147   gctcttgcttttttattcct 166
             ||||||||||||||||||||
Sbjct: 21516 gctcttgcttttttattcct 21535
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>dbj|BS000591.1| Pan troglodytes chromosome Y clone:PTB-113D22, complete sequence
          Length = 188847

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 535   tcaaggtagcttctgaaatg 554
             ||||||||||||||||||||
Sbjct: 88380 tcaaggtagcttctgaaatg 88399
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>gb|DP000054.1| Pan troglodytes chromosome Y, partial sequence
          Length = 23952694

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 535      tcaaggtagcttctgaaatg 554
                ||||||||||||||||||||
Sbjct: 16981652 tcaaggtagcttctgaaatg 16981633
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>gb|AC069405.6| Drosophila melanogaster 3L BAC RP98-17J20 (Roswell Park Cancer
             Institute Drosophila BAC Library) complete sequence
          Length = 167638

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 421   cagagatatgggcaataaac 440
             ||||||||||||||||||||
Sbjct: 48685 cagagatatgggcaataaac 48666
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>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 412    tgtccatcccagagatatgg 431
              ||||||||||||||||||||
Sbjct: 427085 tgtccatcccagagatatgg 427066
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>gb|AC104791.3| Homo sapiens BAC clone RP11-181K12 from 4, complete sequence
          Length = 159969

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 147    gctcttgcttttttattcct 166
              ||||||||||||||||||||
Sbjct: 112812 gctcttgcttttttattcct 112831
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>gb|AC011816.17|AC011816 Homo sapiens chromosome 3, clone RP11-129K12, complete sequence
          Length = 169313

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 405   gccatggtgtccatcccaga 424
             ||||||||||||||||||||
Sbjct: 54457 gccatggtgtccatcccaga 54476
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>gb|AC007034.4|AC007034 Homo sapiens BAC clone RP11-99M1 from Y, complete sequence
          Length = 149198

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 535    tcaaggtagcttctgaaatg 554
              ||||||||||||||||||||
Sbjct: 133092 tcaaggtagcttctgaaatg 133111
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>emb|CT573055.2| Medicago truncatula chromosome 5 clone mth2-75o19, COMPLETE SEQUENCE
          Length = 121343

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    gaagaacgagtttaattttgatat 33
             |||||| |||||||||||||||||
Sbjct: 98805 gaagaatgagtttaattttgatat 98782
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>gb|AE003537.3| Drosophila melanogaster chromosome 3L, section 48 of 83 of the complete
              sequence
          Length = 282116

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 421    cagagatatgggcaataaac 440
              ||||||||||||||||||||
Sbjct: 244397 cagagatatgggcaataaac 244378
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>emb|AL845436.7| Mouse DNA sequence from clone RP23-299N13 on chromosome 2, complete
             sequence
          Length = 126095

 Score = 40.1 bits (20), Expect = 7.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 211   cagccaattcctgtttgccc 230
             ||||||||||||||||||||
Sbjct: 43989 cagccaattcctgtttgccc 44008


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,310,937
Number of Sequences: 3902068
Number of extensions: 4310937
Number of successful extensions: 77675
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 77532
Number of HSP's gapped (non-prelim): 143
length of query: 563
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 540
effective length of database: 17,143,297,704
effective search space: 9257380760160
effective search space used: 9257380760160
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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