Clone Name | rbah61n24 |
---|---|
Clone Library Name | barley_pub |
>FRQ_SORFI (Q09033) Frequency clock protein| Length = 997 Score = 33.9 bits (76), Expect = 0.39 Identities = 40/160 (25%), Positives = 58/160 (36%), Gaps = 9/160 (5%) Frame = -1 Query: 588 PNAYDWRADPAPRKRMQGQEDIGH-----KDAQPRTASSHRSGVIWPPHINHRPDSDFKR 424 P +D R P PR+ + H +DA R SS GV P +P S R Sbjct: 13 PPPFDSRGHPLPRRASPDKSITLHNHRLARDASSRVISSSALGVTGP---QPQPTSSPTR 69 Query: 423 RLMDALQKPFSRKEYIKLFDMASIRTPLVKLRQVRN----DAKFYPTEEMGNSYFDHYPD 256 R + + FD ++ R P+ N D FY E ++ YP Sbjct: 70 RDSSGESNDTGQSDPKSWFDQSN-RNPVAAFNDESNIMEVDPPFYQKETDSSNEDSRYP- 127 Query: 255 LVEQVTNNTFSKGLALMRGFFFWLQNSAHEDQFRPWTDDL 136 N ++ +GF + +S+ D FR DDL Sbjct: 128 ---PGRNPSYPPRDTQTQGFRATVAHSSSADDFRSVIDDL 164
>GLYA_PYRAE (Q8ZYF9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine| methylase) (SHMT) Length = 430 Score = 32.7 bits (73), Expect = 0.87 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%) Frame = -1 Query: 390 RKEYIKLFDMASIRTPLVKLRQVRNDAKFYPTEEMGNSYFD--HYPDLVEQVTNNTFSKG 217 RKE I L ++ +PL +L V + A Y +GN Y+ Y D++E + F+K Sbjct: 21 RKETINLIASENVMSPLAELVYVNDFAGRYAEGTVGNRYYQGTKYVDILEDSLSKRFAKV 80 Query: 216 L 214 L Sbjct: 81 L 81
>OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX)| Length = 371 Score = 31.2 bits (69), Expect = 2.5 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 8/89 (8%) Frame = -1 Query: 609 PVVIMPEPNAYD-----WRADPAPRKRMQGQEDIGHKDAQ---PRTASSHRSGVIWPPHI 454 P+ + P P AY A PAP + + + Q P T+ S I PP Sbjct: 71 PMHLYPYPYAYSNPMYGEGALPAPDRHLPPTQQHPMFQPQVLGPMTSERPHSNGIDPPRK 130 Query: 453 NHRPDSDFKRRLMDALQKPFSRKEYIKLF 367 R + F R +D L+ FSR Y +F Sbjct: 131 QRRERTTFTRAQLDVLETLFSRTRYPDIF 159
>VNCS_PAVBO (P07296) Noncapsid protein NS-1 (Nonstructural protein NS1)| Length = 726 Score = 30.8 bits (68), Expect = 3.3 Identities = 10/27 (37%), Positives = 18/27 (66%) Frame = -1 Query: 564 DPAPRKRMQGQEDIGHKDAQPRTASSH 484 DP P + +G+ D+ +DA+P ++SH Sbjct: 599 DPIPEEPEEGERDLAREDAEPEASTSH 625
>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog| (Xeroderma pigmentosum group G-complementing protein homolog) Length = 1196 Score = 30.8 bits (68), Expect = 3.3 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%) Frame = -1 Query: 396 FSRKEYIKLFDMASIRTPLVKLRQVRNDAKFYPTEEMGNSYFDHYPDL----VEQVTNNT 229 FS+ ++++ + A I L R + + +G+ Y + P + ++ N Sbjct: 859 FSQNKHVEYYQYADIHNQLGLDRSKLINLAYL----LGSDYTEGIPTVGYVSAMEILNEF 914 Query: 228 FSKGLALMRGFFFWLQNSAHEDQFRPWTDDLKDQDVIPLMDLDYAFP 88 +GL + F W + + + RP +D K + + L+DL +FP Sbjct: 915 PGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFP 961
>SMCL_ARATH (Q8VY05) Putative SWI/SNF-related matrix-associated actin-dependent| regulator of chromatin subfamily C member (AtSwi3C) Length = 985 Score = 29.3 bits (64), Expect = 9.6 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%) Frame = -1 Query: 576 DWRADPAPRKRM----QGQEDIGHKDAQPRTASSHRSGVIWPPHINHRPDSDFKRRLMDA 409 D + DP K +G +D HKD QP S V PD+D + D+ Sbjct: 595 DNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDS 654 Query: 408 L---QKPFSRKE 382 + ++P SR E Sbjct: 655 VSEEKQPGSRTE 666
>HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)| (Muscle form hexokinase) Length = 917 Score = 29.3 bits (64), Expect = 9.6 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 18/101 (17%) Frame = -1 Query: 357 SIRTPLVKLR-------QVRNDAKFYPTEEM---GNSYFDHYPDLVEQVTNNTFSKGLAL 208 + R LV++R ++ N P E M G+ FDH + KG++L Sbjct: 537 NFRVLLVRVRNGKWGGVEMHNKIYAIPQEVMHGTGDELFDHIVQCIADFLEYMGMKGVSL 596 Query: 207 MRGFFFWL---QNSAHEDQFRPWTDDLK-----DQDVIPLM 109 GF F QNS E WT K +DV+ L+ Sbjct: 597 PLGFTFSFPCQQNSLDESILLKWTKGFKASGCEGEDVVTLL 637 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 93,139,960 Number of Sequences: 219361 Number of extensions: 1968728 Number of successful extensions: 4286 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 4220 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4285 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)