>FRQ_SORFI (Q09033) Frequency clock protein|
          Length = 997

 Score = 33.9 bits (76), Expect = 0.39
 Identities = 40/160 (25%), Positives = 58/160 (36%), Gaps = 9/160 (5%)
 Frame = -1

Query: 588 PNAYDWRADPAPRKRMQGQEDIGH-----KDAQPRTASSHRSGVIWPPHINHRPDSDFKR 424
           P  +D R  P PR+    +    H     +DA  R  SS   GV  P     +P S   R
Sbjct: 13  PPPFDSRGHPLPRRASPDKSITLHNHRLARDASSRVISSSALGVTGP---QPQPTSSPTR 69

Query: 423 RLMDALQKPFSRKEYIKLFDMASIRTPLVKLRQVRN----DAKFYPTEEMGNSYFDHYPD 256
           R          + +    FD ++ R P+       N    D  FY  E   ++    YP 
Sbjct: 70  RDSSGESNDTGQSDPKSWFDQSN-RNPVAAFNDESNIMEVDPPFYQKETDSSNEDSRYP- 127

Query: 255 LVEQVTNNTFSKGLALMRGFFFWLQNSAHEDQFRPWTDDL 136
                 N ++       +GF   + +S+  D FR   DDL
Sbjct: 128 ---PGRNPSYPPRDTQTQGFRATVAHSSSADDFRSVIDDL 164

>GLYA_PYRAE (Q8ZYF9) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 430

 Score = 32.7 bits (73), Expect = 0.87
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -1

Query: 390 RKEYIKLFDMASIRTPLVKLRQVRNDAKFYPTEEMGNSYFD--HYPDLVEQVTNNTFSKG 217
           RKE I L    ++ +PL +L  V + A  Y    +GN Y+    Y D++E   +  F+K 
Sbjct: 21  RKETINLIASENVMSPLAELVYVNDFAGRYAEGTVGNRYYQGTKYVDILEDSLSKRFAKV 80

Query: 216 L 214
           L
Sbjct: 81  L 81

>OTX_STRPU (Q26417) Homeobox protein OTX (SPOTX)|
          Length = 371

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 26/89 (29%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
 Frame = -1

Query: 609 PVVIMPEPNAYD-----WRADPAPRKRMQGQEDIGHKDAQ---PRTASSHRSGVIWPPHI 454
           P+ + P P AY        A PAP + +   +       Q   P T+    S  I PP  
Sbjct: 71  PMHLYPYPYAYSNPMYGEGALPAPDRHLPPTQQHPMFQPQVLGPMTSERPHSNGIDPPRK 130

Query: 453 NHRPDSDFKRRLMDALQKPFSRKEYIKLF 367
             R  + F R  +D L+  FSR  Y  +F
Sbjct: 131 QRRERTTFTRAQLDVLETLFSRTRYPDIF 159

>VNCS_PAVBO (P07296) Noncapsid protein NS-1 (Nonstructural protein NS1)|
          Length = 726

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -1

Query: 564 DPAPRKRMQGQEDIGHKDAQPRTASSH 484
           DP P +  +G+ D+  +DA+P  ++SH
Sbjct: 599 DPIPEEPEEGERDLAREDAEPEASTSH 625

>ERCC5_XENLA (P14629) DNA-repair protein complementing XP-G cells homolog|
            (Xeroderma pigmentosum group G-complementing protein
            homolog)
          Length = 1196

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 23/107 (21%), Positives = 47/107 (43%), Gaps = 4/107 (3%)
 Frame = -1

Query: 396  FSRKEYIKLFDMASIRTPLVKLRQVRNDAKFYPTEEMGNSYFDHYPDL----VEQVTNNT 229
            FS+ ++++ +  A I   L   R    +  +     +G+ Y +  P +      ++ N  
Sbjct: 859  FSQNKHVEYYQYADIHNQLGLDRSKLINLAYL----LGSDYTEGIPTVGYVSAMEILNEF 914

Query: 228  FSKGLALMRGFFFWLQNSAHEDQFRPWTDDLKDQDVIPLMDLDYAFP 88
              +GL  +  F  W   +  + + RP  +D K +  + L+DL  +FP
Sbjct: 915  PGQGLEPLVKFKEWWSEAQKDKKMRPNPNDTKVKKKLRLLDLQQSFP 961

>SMCL_ARATH (Q8VY05) Putative SWI/SNF-related matrix-associated actin-dependent|
           regulator of chromatin subfamily C member (AtSwi3C)
          Length = 985

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 7/72 (9%)
 Frame = -1

Query: 576 DWRADPAPRKRM----QGQEDIGHKDAQPRTASSHRSGVIWPPHINHRPDSDFKRRLMDA 409
           D + DP   K      +G +D  HKD QP   S     V         PD+D  +   D+
Sbjct: 595 DNKKDPTKSKSCSADAEGNDDNSHKDDQPEEKSKKAEEVSLNSDDREMPDTDTGKETQDS 654

Query: 408 L---QKPFSRKE 382
           +   ++P SR E
Sbjct: 655 VSEEKQPGSRTE 666

>HXK2_HUMAN (P52789) Hexokinase-2 (EC 2.7.1.1) (Hexokinase type II) (HK II)|
           (Muscle form hexokinase)
          Length = 917

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 28/101 (27%), Positives = 40/101 (39%), Gaps = 18/101 (17%)
 Frame = -1

Query: 357 SIRTPLVKLR-------QVRNDAKFYPTEEM---GNSYFDHYPDLVEQVTNNTFSKGLAL 208
           + R  LV++R       ++ N     P E M   G+  FDH    +         KG++L
Sbjct: 537 NFRVLLVRVRNGKWGGVEMHNKIYAIPQEVMHGTGDELFDHIVQCIADFLEYMGMKGVSL 596

Query: 207 MRGFFFWL---QNSAHEDQFRPWTDDLK-----DQDVIPLM 109
             GF F     QNS  E     WT   K      +DV+ L+
Sbjct: 597 PLGFTFSFPCQQNSLDESILLKWTKGFKASGCEGEDVVTLL 637


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 93,139,960
Number of Sequences: 219361
Number of extensions: 1968728
Number of successful extensions: 4286
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 4220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4285
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)