Clone Name | rbah61n24 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 996 Score = 262 bits (132), Expect = 1e-66 Identities = 284/332 (85%), Gaps = 2/332 (0%) Strand = Plus / Minus Query: 148 ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 207 |||||| |||||||| || || |||||| |||||||||||||||||||||| |||||||| Sbjct: 951 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 892 Query: 208 caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 267 || ||||||||| || | |||| || ||| ||||||| || || |||||||||||||| Sbjct: 891 cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 832 Query: 268 atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 327 |||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||||||||| Sbjct: 831 atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 772 Query: 328 tcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaatatattcttt 387 || || || ||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 771 ccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaatatattcttt 712 Query: 388 ccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtctgaatctggcc 446 || ||||||||||| ||| |||||||||| || || ||||||| |||||||| || | Sbjct: 711 tcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatctgaatccggtc 653 Query: 447 tatggttgatatgtggaggccatataacacct 478 || ||||||||||| ||||||||||||||| Sbjct: 652 tactgttgatatgtgccggccatataacacct 621
>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full insert sequence Length = 1351 Score = 262 bits (132), Expect = 1e-66 Identities = 284/332 (85%), Gaps = 2/332 (0%) Strand = Plus / Minus Query: 148 ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 207 |||||| |||||||| || || |||||| |||||||||||||||||||||| |||||||| Sbjct: 1013 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 954 Query: 208 caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 267 || ||||||||| || | |||| || ||| ||||||| || || |||||||||||||| Sbjct: 953 cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 894 Query: 268 atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 327 |||||| |||||||| ||||| |||| ||||||||||| ||| |||||||||||||||| Sbjct: 893 atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 834 Query: 328 tcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaatatattcttt 387 || || || ||||| || ||||||||||||||||||||||| ||||||||||||||||| Sbjct: 833 ccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaatatattcttt 774 Query: 388 ccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtctgaatctggcc 446 || ||||||||||| ||| |||||||||| || || ||||||| |||||||| || | Sbjct: 773 tcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatctgaatccggtc 715 Query: 447 tatggttgatatgtggaggccatataacacct 478 || ||||||||||| ||||||||||||||| Sbjct: 714 tactgttgatatgtgccggccatataacacct 683
>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07, complete sequence Length = 143585 Score = 186 bits (94), Expect = 6e-44 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Plus Query: 258 ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 317 |||||||||||||||| |||||||| ||||| |||| ||||||||||| ||| |||||| Sbjct: 21772 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 21831 Query: 318 tgcgcacctgtcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaa 377 |||||||||| || || || ||||| || ||||||||||||||||||||||| ||||||| Sbjct: 21832 tgcgcacctgccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaa 21891 Query: 378 tatattctttccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtct 436 |||||||||| || ||||||||||| ||| |||||||||| || || ||||||| ||| Sbjct: 21892 tatattcttttcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatct 21950 Query: 437 gaatctggcctatggttgatatgtggaggccatataacacct 478 ||||| || ||| ||||||||||| ||||||||||||||| Sbjct: 21951 gaatccggtctactgttgatatgtgccggccatataacacct 21992 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 181 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 20623 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 20661
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 186 bits (94), Expect = 6e-44 Identities = 192/222 (86%), Gaps = 2/222 (0%) Strand = Plus / Plus Query: 258 ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 317 |||||||||||||||| |||||||| ||||| |||| ||||||||||| ||| |||||| Sbjct: 26954072 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 26954131 Query: 318 tgcgcacctgtcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaa 377 |||||||||| || || || ||||| || ||||||||||||||||||||||| ||||||| Sbjct: 26954132 tgcgcacctgccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaa 26954191 Query: 378 tatattctttccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtct 436 |||||||||| || ||||||||||| ||| |||||||||| || || ||||||| ||| Sbjct: 26954192 tatattcttttcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatct 26954250 Query: 437 gaatctggcctatggttgatatgtggaggccatataacacct 478 ||||| || ||| ||||||||||| ||||||||||||||| Sbjct: 26954251 gaatccggtctactgttgatatgtgccggccatataacacct 26954292 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 181 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 26952923 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 26952961
>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06, complete sequence Length = 174570 Score = 61.9 bits (31), Expect = 2e-06 Identities = 37/39 (94%) Strand = Plus / Plus Query: 181 ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219 |||||||||||||||||| |||||||||| ||||||||| Sbjct: 173983 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 174021
>ref|XM_474925.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1356 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 241 aacttgttcgacaagatctgggtaatgatcaaaatatga 279 |||||||| | |||||||||||||| |||||||||||| Sbjct: 1224 aacttgtttggcaagatctgggtaacaatcaaaatatga 1186
>dbj|AK102514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095J08, full insert sequence Length = 1669 Score = 46.1 bits (23), Expect = 0.14 Identities = 35/39 (89%) Strand = Plus / Minus Query: 241 aacttgttcgacaagatctgggtaatgatcaaaatatga 279 |||||||| | |||||||||||||| |||||||||||| Sbjct: 1253 aacttgtttggcaagatctgggtaacaatcaaaatatga 1215
>ref|NM_100004.1| Arabidopsis thaliana ATP binding / galactokinase/ kinase/ phosphotransferase, alcohol group as acceptor AT1G01220 mRNA, complete cds Length = 3168 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 214 taaacccttggaaaaggtattgtttg 239 |||||||||||| ||||||||||||| Sbjct: 1470 taaacccttggagaaggtattgtttg 1495
>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete sequence Length = 104001 Score = 44.1 bits (22), Expect = 0.54 Identities = 25/26 (96%) Strand = Plus / Plus Query: 214 taaacccttggaaaaggtattgtttg 239 |||||||||||| ||||||||||||| Sbjct: 34603 taaacccttggagaaggtattgtttg 34628
>gb|AC132358.3| Mus musculus BAC clone RP24-133O24 from chromosome 18, complete sequence Length = 182085 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 430 gaagtctgaatctggcctatg 450 ||||||||||||||||||||| Sbjct: 121595 gaagtctgaatctggcctatg 121575
>gb|AC024607.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-240H6, complete sequence Length = 197273 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 529 ttcctggccctgcatcctttt 549 ||||||||||||||||||||| Sbjct: 95868 ttcctggccctgcatcctttt 95888
>gb|AC125283.1| Homo sapiens chromosome 2 clone RP11-268N9, complete sequence Length = 78812 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 aaaatatgaattgcccatctc 291 ||||||||||||||||||||| Sbjct: 74005 aaaatatgaattgcccatctc 73985
>gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 147239 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 50 aattatttccacaaaagagaa 70 ||||||||||||||||||||| Sbjct: 62508 aattatttccacaaaagagaa 62488
>gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, complete sequence Length = 70533 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 170 tgtgcactattctgcaaccag 190 ||||||||||||||||||||| Sbjct: 37858 tgtgcactattctgcaaccag 37838
>gb|AC107211.5| Homo sapiens BAC clone RP11-268N9 from 2, complete sequence Length = 78812 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 271 aaaatatgaattgcccatctc 291 ||||||||||||||||||||| Sbjct: 74005 aaaatatgaattgcccatctc 73985
>gb|AC150277.2| Mus musculus BAC clone RP23-97E12 from 18, complete sequence Length = 179399 Score = 42.1 bits (21), Expect = 2.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 430 gaagtctgaatctggcctatg 450 ||||||||||||||||||||| Sbjct: 159841 gaagtctgaatctggcctatg 159861
>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome Length = 4109442 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 538 ctgcatccttttacgaggggctgg 561 |||||||||||||||||| ||||| Sbjct: 1351309 ctgcatccttttacgaggcgctgg 1351332
>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete sequence Length = 282699 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 aacatcttgatctttcagat 140 |||||||||||||||||||| Sbjct: 170094 aacatcttgatctttcagat 170113
>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through 64 and complete cds Length = 153745 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 428 ttgaagtctgaatctggcct 447 |||||||||||||||||||| Sbjct: 40570 ttgaagtctgaatctggcct 40589
>gb|AC147269.3| Mus musculus BAC clone RP24-281E6 from chromosome 18, complete sequence Length = 177277 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 59 cacaaaagagaagatgagtgaatg 82 ||||||||| |||||||||||||| Sbjct: 35983 cacaaaagaaaagatgagtgaatg 36006
>gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosome 18, complete sequence Length = 182065 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 cacaaaagagaagatgagtgaatg 82 ||||||||| |||||||||||||| Sbjct: 174172 cacaaaagaaaagatgagtgaatg 174149
>ref|XM_754306.1| Ustilago maydis 521 hypothetical protein (UM03252.1) partial mRNA Length = 1806 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 485 tgtgacgaagcagtgcgagg 504 |||||||||||||||||||| Sbjct: 124 tgtgacgaagcagtgcgagg 105
>ref|XM_843498.1| PREDICTED: Canis familiaris hypothetical LOC482730, transcript variant 2 (LOC482730), mRNA Length = 3724 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 52 ttatttccacaaaagagaag 71 |||||||||||||||||||| Sbjct: 3177 ttatttccacaaaagagaag 3158
>ref|XM_816788.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511277.130) partial mRNA Length = 2778 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gatctttcagatcatctgtc 148 |||||||||||||||||||| Sbjct: 168 gatctttcagatcatctgtc 187
>ref|XM_798247.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053464807.20) partial mRNA Length = 1863 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 129 gatctttcagatcatctgtc 148 |||||||||||||||||||| Sbjct: 93 gatctttcagatcatctgtc 112
>ref|XM_721059.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00666) partial mRNA Length = 861 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 tcaaaatatgaattgcccat 288 |||||||||||||||||||| Sbjct: 470 tcaaaatatgaattgcccat 451
>gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, complete sequence Length = 160687 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 262 gtaatgatcaaaatatgaat 281 |||||||||||||||||||| Sbjct: 33828 gtaatgatcaaaatatgaat 33809
>emb|AL807761.8| Human DNA sequence from clone RP11-196I18 on chromosome 9 Contains the 5' end of a novel gene (FLJ40387), a novel pseudogene, a MMRP19 pseudogene and a novel gene, complete sequence Length = 103861 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 atgagtgaatgaactaaggaaatg 95 ||||||||||||||||| |||||| Sbjct: 87903 atgagtgaatgaactaatgaaatg 87926
>emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chromosome 6 Contains a ribosomal protein L5 (RPL5) pseudogene, complete sequence Length = 162540 Score = 40.1 bits (20), Expect = 8.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 117 gaataacatcttgatctttcagat 140 ||||||||||||||| |||||||| Sbjct: 63931 gaataacatcttgatatttcagat 63954
>emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chromosome 11 Contains a novel gene, complete sequence Length = 154687 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 177 tattctgcaaccagaagaaa 196 |||||||||||||||||||| Sbjct: 129619 tattctgcaaccagaagaaa 129638
>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a peroxiredoxin 6 (Prdx6) pseudogene, a novel gene (1700086D15Rik), a novel pseudogene, and two CpG islands, complete sequence Length = 196566 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 528 cttcctggccctgcatcctt 547 |||||||||||||||||||| Sbjct: 94670 cttcctggccctgcatcctt 94689
>emb|BX648652.1|HSM808803 Homo sapiens mRNA; cDNA DKFZp686J06117 (from clone DKFZp686J06117) Length = 3633 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gtaatgatcaaaatatgaat 281 |||||||||||||||||||| Sbjct: 1888 gtaatgatcaaaatatgaat 1907
>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence Length = 167984 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 253 aagatctgggtaatgatcaa 272 |||||||||||||||||||| Sbjct: 58508 aagatctgggtaatgatcaa 58527
>gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, complete sequence Length = 169662 Score = 40.1 bits (20), Expect = 8.4 Identities = 22/23 (95%) Strand = Plus / Plus Query: 1 aaatgataaaaatnaatattctg 23 ||||||||||||| ||||||||| Sbjct: 81001 aaatgataaaaattaatattctg 81023
>ref|NM_152754.2| Homo sapiens sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D (SEMA3D), mRNA Length = 6276 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 gtaatgatcaaaatatgaat 281 |||||||||||||||||||| Sbjct: 4531 gtaatgatcaaaatatgaat 4550
>emb|BX537130.6| Zebrafish DNA sequence from clone DKEY-104I23 in linkage group 20, complete sequence Length = 188776 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 226 aaaggtattgtttgtaactt 245 |||||||||||||||||||| Sbjct: 85691 aaaggtattgtttgtaactt 85710
>emb|AL671890.11| Mouse DNA sequence from clone RP23-408A13 on chromosome X, complete sequence Length = 198788 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 360 ccatgtcaaacagcttaata 379 |||||||||||||||||||| Sbjct: 66175 ccatgtcaaacagcttaata 66156
>emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6) clone 278H24 of library Caltech CITB-BAC from chromosome 11 of Mus musculus (mouse) Length = 150493 Score = 40.1 bits (20), Expect = 8.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 177 tattctgcaaccagaagaaa 196 |||||||||||||||||||| Sbjct: 56541 tattctgcaaccagaagaaa 56522 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,273,362 Number of Sequences: 3902068 Number of extensions: 5273362 Number of successful extensions: 95418 Number of sequences better than 10.0: 38 Number of HSP's better than 10.0 without gapping: 38 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 95300 Number of HSP's gapped (non-prelim): 112 length of query: 615 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 592 effective length of database: 17,143,297,704 effective search space: 10148832240768 effective search space used: 10148832240768 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)