ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n24
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_473348.1| Oryza sativa (japonica cultivar-group), predic... 262 1e-66
2dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clon... 262 1e-66
3emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4,... 186 6e-44
4dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 186 6e-44
5emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4,... 62 2e-06
6ref|XM_474925.1| Oryza sativa (japonica cultivar-group), predic... 46 0.14
7dbj|AK102514.1| Oryza sativa (japonica cultivar-group) cDNA clon... 46 0.14
8ref|NM_100004.1| Arabidopsis thaliana ATP binding / galactokinas... 44 0.54
9gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F... 44 0.54
10gb|AC132358.3| Mus musculus BAC clone RP24-133O24 from chromosom... 42 2.1
11gb|AC024607.3| Mus musculus strain C57BL6/J chromosome 5 clone R... 42 2.1
12gb|AC125283.1| Homo sapiens chromosome 2 clone RP11-268N9, compl... 42 2.1
13gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park... 42 2.1
14gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, compl... 42 2.1
15gb|AC107211.5| Homo sapiens BAC clone RP11-268N9 from 2, complet... 42 2.1
16gb|AC150277.2| Mus musculus BAC clone RP23-97E12 from 18, comple... 42 2.1
17gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 8.4
18gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resista... 40 8.4
19gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein ... 40 8.4
20gb|AC147269.3| Mus musculus BAC clone RP24-281E6 from chromosome... 40 8.4
21gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosom... 40 8.4
22ref|XM_754306.1| Ustilago maydis 521 hypothetical protein (UM032... 40 8.4
23ref|XM_843498.1| PREDICTED: Canis familiaris hypothetical LOC482... 40 8.4
24ref|XM_816788.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
25ref|XM_798247.1| Trypanosoma cruzi strain CL Brener hypothetical... 40 8.4
26ref|XM_721059.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 8.4
27gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, comple... 40 8.4
28emb|AL807761.8| Human DNA sequence from clone RP11-196I18 on chr... 40 8.4
29emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chro... 40 8.4
30emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chr... 40 8.4
31emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chro... 40 8.4
32emb|BX648652.1|HSM808803 Homo sapiens mRNA; cDNA DKFZp686J06117 ... 40 8.4
33gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, com... 40 8.4
34gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, comple... 40 8.4
35ref|NM_152754.2| Homo sapiens sema domain, immunoglobulin domain... 40 8.4
36emb|BX537130.6| Zebrafish DNA sequence from clone DKEY-104I23 in... 40 8.4
37emb|AL671890.11| Mouse DNA sequence from clone RP23-408A13 on ch... 40 8.4
38emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the... 40 8.4

>ref|XM_473348.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 996

 Score =  262 bits (132), Expect = 1e-66
 Identities = 284/332 (85%), Gaps = 2/332 (0%)
 Strand = Plus / Minus

                                                                       
Query: 148 ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 207
           |||||| |||||||| || || |||||| |||||||||||||||||||||| ||||||||
Sbjct: 951 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 892

                                                                       
Query: 208 caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 267
           || ||||||||| || | |||| || |||   ||||||| || || ||||||||||||||
Sbjct: 891 cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 832

                                                                       
Query: 268 atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 327
           |||||| |||||||| ||||| ||||  ||||||||||| ||| ||||||||||||||||
Sbjct: 831 atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 772

                                                                       
Query: 328 tcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaatatattcttt 387
            || || || ||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 771 ccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaatatattcttt 712

                                                                       
Query: 388 ccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtctgaatctggcc 446
            || ||||||||||| ||| ||||||||||  || ||  ||||||| |||||||| || |
Sbjct: 711 tcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatctgaatccggtc 653

                                           
Query: 447 tatggttgatatgtggaggccatataacacct 478
           ||  |||||||||||  |||||||||||||||
Sbjct: 652 tactgttgatatgtgccggccatataacacct 621



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>dbj|AK069820.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023028L03, full
            insert sequence
          Length = 1351

 Score =  262 bits (132), Expect = 1e-66
 Identities = 284/332 (85%), Gaps = 2/332 (0%)
 Strand = Plus / Minus

                                                                        
Query: 148  ccatggtctgaattggtcctcgtgtgcactattctgcaaccagaagaaaaatccacgcat 207
            |||||| |||||||| || || |||||| |||||||||||||||||||||| ||||||||
Sbjct: 1013 ccatggcctgaattgatcttcatgtgcattattctgcaaccagaagaaaaacccacgcat 954

                                                                        
Query: 208  caaagctaaacccttggaaaaggtattgtttgtaacttgttcgacaagatctgggtaatg 267
            || ||||||||| || | |||| || |||   ||||||| || || ||||||||||||||
Sbjct: 953  cagagctaaaccatttggaaagctagtgtgcataacttggtcaacgagatctgggtaatg 894

                                                                        
Query: 268  atcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcattgcgcacctg 327
            |||||| |||||||| ||||| ||||  ||||||||||| ||| ||||||||||||||||
Sbjct: 893  atcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcattgcgcacctg 834

                                                                        
Query: 328  tcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaatatattcttt 387
             || || || ||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct: 833  ccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaatatattcttt 774

                                                                        
Query: 388  ccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtctgaatctggcc 446
             || ||||||||||| ||| ||||||||||  || ||  ||||||| |||||||| || |
Sbjct: 773  tcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatctgaatccggtc 715

                                            
Query: 447  tatggttgatatgtggaggccatataacacct 478
            ||  |||||||||||  |||||||||||||||
Sbjct: 714  tactgttgatatgtgccggccatataacacct 683



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>emb|AL606587.3|OSJN00022 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0011L07,
             complete sequence
          Length = 143585

 Score =  186 bits (94), Expect = 6e-44
 Identities = 192/222 (86%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                         
Query: 258   ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 317
             |||||||||||||||| |||||||| ||||| ||||  ||||||||||| ||| ||||||
Sbjct: 21772 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 21831

                                                                         
Query: 318   tgcgcacctgtcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaa 377
             |||||||||| || || || ||||| || ||||||||||||||||||||||| |||||||
Sbjct: 21832 tgcgcacctgccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaa 21891

                                                                         
Query: 378   tatattctttccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtct 436
             |||||||||| || ||||||||||| ||| ||||||||||  || ||  ||||||| |||
Sbjct: 21892 tatattcttttcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatct 21950

                                                       
Query: 437   gaatctggcctatggttgatatgtggaggccatataacacct 478
             ||||| || |||  |||||||||||  |||||||||||||||
Sbjct: 21951 gaatccggtctactgttgatatgtgccggccatataacacct 21992



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                    
Query: 181   ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219
             |||||||||||||||||| |||||||||| |||||||||
Sbjct: 20623 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 20661



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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  186 bits (94), Expect = 6e-44
 Identities = 192/222 (86%), Gaps = 2/222 (0%)
 Strand = Plus / Plus

                                                                            
Query: 258      ctgggtaatgatcaaaatatgaattgcccatctcctcggtagggtagaattttgcatcat 317
                |||||||||||||||| |||||||| ||||| ||||  ||||||||||| ||| ||||||
Sbjct: 26954072 ctgggtaatgatcaaagtatgaatttcccatttcctgtgtagggtagaactttacatcat 26954131

                                                                            
Query: 318      tgcgcacctgtcgcaacttcactaaaggagtacgaatagaagccatgtcaaacagcttaa 377
                |||||||||| || || || ||||| || ||||||||||||||||||||||| |||||||
Sbjct: 26954132 tgcgcacctgccgtaattttactaatggtgtacgaatagaagccatgtcaaatagcttaa 26954191

                                                                            
Query: 378      tatattctttccggctaaatggttt-ctgaagagcatccatcaatcttcgcttgaagtct 436
                |||||||||| || ||||||||||| ||| ||||||||||  || ||  ||||||| |||
Sbjct: 26954192 tatattcttttcgactaaatggtttgctg-agagcatccaataacctctgcttgaaatct 26954250

                                                          
Query: 437      gaatctggcctatggttgatatgtggaggccatataacacct 478
                ||||| || |||  |||||||||||  |||||||||||||||
Sbjct: 26954251 gaatccggtctactgttgatatgtgccggccatataacacct 26954292



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                       
Query: 181      ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219
                |||||||||||||||||| |||||||||| |||||||||
Sbjct: 26952923 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 26952961



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>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
              complete sequence
          Length = 174570

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 37/39 (94%)
 Strand = Plus / Plus

                                                     
Query: 181    ctgcaaccagaagaaaaatccacgcatcaaagctaaacc 219
              |||||||||||||||||| |||||||||| |||||||||
Sbjct: 173983 ctgcaaccagaagaaaaacccacgcatcagagctaaacc 174021



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>ref|XM_474925.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1356

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 241  aacttgttcgacaagatctgggtaatgatcaaaatatga 279
            |||||||| | ||||||||||||||  ||||||||||||
Sbjct: 1224 aacttgtttggcaagatctgggtaacaatcaaaatatga 1186



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>dbj|AK102514.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033095J08, full
            insert sequence
          Length = 1669

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 35/39 (89%)
 Strand = Plus / Minus

                                                   
Query: 241  aacttgttcgacaagatctgggtaatgatcaaaatatga 279
            |||||||| | ||||||||||||||  ||||||||||||
Sbjct: 1253 aacttgtttggcaagatctgggtaacaatcaaaatatga 1215



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>ref|NM_100004.1| Arabidopsis thaliana ATP binding / galactokinase/ kinase/
            phosphotransferase, alcohol group as acceptor AT1G01220
            mRNA, complete cds
          Length = 3168

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                      
Query: 214  taaacccttggaaaaggtattgtttg 239
            |||||||||||| |||||||||||||
Sbjct: 1470 taaacccttggagaaggtattgtttg 1495



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>gb|AC023628.3|AC023628 Arabidopsis thaliana chromosome I BAC F6F3 genomic sequence, complete
             sequence
          Length = 104001

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 214   taaacccttggaaaaggtattgtttg 239
             |||||||||||| |||||||||||||
Sbjct: 34603 taaacccttggagaaggtattgtttg 34628



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>gb|AC132358.3| Mus musculus BAC clone RP24-133O24 from chromosome 18, complete sequence
          Length = 182085

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 430    gaagtctgaatctggcctatg 450
              |||||||||||||||||||||
Sbjct: 121595 gaagtctgaatctggcctatg 121575



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>gb|AC024607.3| Mus musculus strain C57BL6/J chromosome 5 clone RP23-240H6, complete
             sequence
          Length = 197273

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 529   ttcctggccctgcatcctttt 549
             |||||||||||||||||||||
Sbjct: 95868 ttcctggccctgcatcctttt 95888



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>gb|AC125283.1| Homo sapiens chromosome 2 clone RP11-268N9, complete sequence
          Length = 78812

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   aaaatatgaattgcccatctc 291
             |||||||||||||||||||||
Sbjct: 74005 aaaatatgaattgcccatctc 73985



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>gb|AC007529.5| Homo sapiens 12p13 BAC RPCI11-69C13 (Roswell Park Cancer Institute
             Human BAC Library) complete sequence
          Length = 147239

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 50    aattatttccacaaaagagaa 70
             |||||||||||||||||||||
Sbjct: 62508 aattatttccacaaaagagaa 62488



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>gb|AC010229.7| Homo sapiens chromosome 5 clone CTC-312N19, complete sequence
          Length = 70533

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 170   tgtgcactattctgcaaccag 190
             |||||||||||||||||||||
Sbjct: 37858 tgtgcactattctgcaaccag 37838



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>gb|AC107211.5| Homo sapiens BAC clone RP11-268N9 from 2, complete sequence
          Length = 78812

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 271   aaaatatgaattgcccatctc 291
             |||||||||||||||||||||
Sbjct: 74005 aaaatatgaattgcccatctc 73985



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>gb|AC150277.2| Mus musculus BAC clone RP23-97E12 from 18, complete sequence
          Length = 179399

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 430    gaagtctgaatctggcctatg 450
              |||||||||||||||||||||
Sbjct: 159841 gaagtctgaatctggcctatg 159861



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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 538     ctgcatccttttacgaggggctgg 561
               |||||||||||||||||| |||||
Sbjct: 1351309 ctgcatccttttacgaggcgctgg 1351332



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>gb|AF506028.1| Poncirus trifoliata citrus tristeza virus resistance gene locus, complete
              sequence
          Length = 282699

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 121    aacatcttgatctttcagat 140
              ||||||||||||||||||||
Sbjct: 170094 aacatcttgatctttcagat 170113



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>gb|AY587061.1| Sus scrofa ataxia-telangiectasia mutated protein gene, exons 1 through
             64 and complete cds
          Length = 153745

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 428   ttgaagtctgaatctggcct 447
             ||||||||||||||||||||
Sbjct: 40570 ttgaagtctgaatctggcct 40589



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>gb|AC147269.3| Mus musculus BAC clone RP24-281E6 from chromosome 18, complete sequence
          Length = 177277

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 59    cacaaaagagaagatgagtgaatg 82
             ||||||||| ||||||||||||||
Sbjct: 35983 cacaaaagaaaagatgagtgaatg 36006



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>gb|AC138529.2| Mus musculus BAC clone RP24-255J24 from chromosome 18, complete sequence
          Length = 182065

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 59     cacaaaagagaagatgagtgaatg 82
              ||||||||| ||||||||||||||
Sbjct: 174172 cacaaaagaaaagatgagtgaatg 174149



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>ref|XM_754306.1| Ustilago maydis 521 hypothetical protein (UM03252.1) partial mRNA
          Length = 1806

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 485 tgtgacgaagcagtgcgagg 504
           ||||||||||||||||||||
Sbjct: 124 tgtgacgaagcagtgcgagg 105



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>ref|XM_843498.1| PREDICTED: Canis familiaris hypothetical LOC482730, transcript
            variant 2 (LOC482730), mRNA
          Length = 3724

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   ttatttccacaaaagagaag 71
            ||||||||||||||||||||
Sbjct: 3177 ttatttccacaaaagagaag 3158



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>ref|XM_816788.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053511277.130) partial mRNA
          Length = 2778

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 gatctttcagatcatctgtc 148
           ||||||||||||||||||||
Sbjct: 168 gatctttcagatcatctgtc 187



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>ref|XM_798247.1| Trypanosoma cruzi strain CL Brener hypothetical protein
           (Tc00.1047053464807.20) partial mRNA
          Length = 1863

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 129 gatctttcagatcatctgtc 148
           ||||||||||||||||||||
Sbjct: 93  gatctttcagatcatctgtc 112



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>ref|XM_721059.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY00666)
           partial mRNA
          Length = 861

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 269 tcaaaatatgaattgcccat 288
           ||||||||||||||||||||
Sbjct: 470 tcaaaatatgaattgcccat 451



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>gb|AC004957.1| Homo sapiens PAC clone RP5-1093O17 from 7, complete sequence
          Length = 160687

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 262   gtaatgatcaaaatatgaat 281
             ||||||||||||||||||||
Sbjct: 33828 gtaatgatcaaaatatgaat 33809



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>emb|AL807761.8| Human DNA sequence from clone RP11-196I18 on chromosome 9 Contains the
             5' end of a novel gene (FLJ40387), a novel pseudogene, a
             MMRP19 pseudogene and a novel gene, complete sequence
          Length = 103861

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    atgagtgaatgaactaaggaaatg 95
             ||||||||||||||||| ||||||
Sbjct: 87903 atgagtgaatgaactaatgaaatg 87926



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>emb|AL590814.5| Human DNA sequence from clone RP11-173O8 on chromosome 6 Contains a
             ribosomal protein L5 (RPL5) pseudogene, complete sequence
          Length = 162540

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 117   gaataacatcttgatctttcagat 140
             ||||||||||||||| ||||||||
Sbjct: 63931 gaataacatcttgatatttcagat 63954



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>emb|AL645969.20| Mouse DNA sequence from clone RP23-101H2 on chromosome 11 Contains a
              novel gene, complete sequence
          Length = 154687

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 177    tattctgcaaccagaagaaa 196
              ||||||||||||||||||||
Sbjct: 129619 tattctgcaaccagaagaaa 129638



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>emb|AL663045.7| Mouse DNA sequence from clone RP23-219K7 on chromosome 11 Contains the
             Elac2 gene for elaC homolog 2 (E. coli), a novel gene, a
             peroxiredoxin 6 (Prdx6) pseudogene, a novel gene
             (1700086D15Rik), a novel pseudogene, and two CpG islands,
             complete sequence
          Length = 196566

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 528   cttcctggccctgcatcctt 547
             ||||||||||||||||||||
Sbjct: 94670 cttcctggccctgcatcctt 94689



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>emb|BX648652.1|HSM808803 Homo sapiens mRNA; cDNA DKFZp686J06117 (from clone DKFZp686J06117)
          Length = 3633

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  gtaatgatcaaaatatgaat 281
            ||||||||||||||||||||
Sbjct: 1888 gtaatgatcaaaatatgaat 1907



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>gb|AC104211.3| Homo sapiens chromosome 8, clone RP11-100L22, complete sequence
          Length = 167984

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 253   aagatctgggtaatgatcaa 272
             ||||||||||||||||||||
Sbjct: 58508 aagatctgggtaatgatcaa 58527



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>gb|AC068944.5| Homo sapiens BAC clone RP11-769N22 from 4, complete sequence
          Length = 169662

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                    
Query: 1     aaatgataaaaatnaatattctg 23
             ||||||||||||| |||||||||
Sbjct: 81001 aaatgataaaaattaatattctg 81023



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>ref|NM_152754.2| Homo sapiens sema domain, immunoglobulin domain (Ig), short basic
            domain, secreted, (semaphorin) 3D (SEMA3D), mRNA
          Length = 6276

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 262  gtaatgatcaaaatatgaat 281
            ||||||||||||||||||||
Sbjct: 4531 gtaatgatcaaaatatgaat 4550



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>emb|BX537130.6| Zebrafish DNA sequence from clone DKEY-104I23 in linkage group 20,
             complete sequence
          Length = 188776

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 226   aaaggtattgtttgtaactt 245
             ||||||||||||||||||||
Sbjct: 85691 aaaggtattgtttgtaactt 85710



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>emb|AL671890.11| Mouse DNA sequence from clone RP23-408A13 on chromosome X, complete
             sequence
          Length = 198788

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 360   ccatgtcaaacagcttaata 379
             ||||||||||||||||||||
Sbjct: 66175 ccatgtcaaacagcttaata 66156



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>emb|AL713838.1|CNS07YOS Mus musculus chromosome 11 region in the Om locus area (D11Mit37-Scya6)
             clone 278H24 of library Caltech CITB-BAC from chromosome
             11 of Mus musculus (mouse)
          Length = 150493

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 177   tattctgcaaccagaagaaa 196
             ||||||||||||||||||||
Sbjct: 56541 tattctgcaaccagaagaaa 56522


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,273,362
Number of Sequences: 3902068
Number of extensions: 5273362
Number of successful extensions: 95418
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 95300
Number of HSP's gapped (non-prelim): 112
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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