ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n23
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g1... 55 2e-07
2PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3) 51 3e-06
3PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3) 51 3e-06
4PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 50 7e-06
5PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 50 7e-06
6PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnR... 50 7e-06
7HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC... 49 2e-05
8HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (... 49 2e-05
9HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K 49 2e-05
10HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (... 49 2e-05
11PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Put... 48 3e-05
12PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnR... 48 3e-05
13PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4) 46 1e-04
14PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4) 44 3e-04
15TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein 40 0.005
16TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein 40 0.005
17FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUS... 40 0.007
18NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncologic... 39 0.016
19FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUS... 37 0.060
20NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological... 36 0.078
21FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-... 36 0.078
22FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUS... 36 0.078
23NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncologic... 36 0.078
24FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUS... 35 0.13
25ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2 34 0.30
26DLEC1_HUMAN (Q9Y238) Deleted in lung and esophageal cancer prote... 34 0.30
27NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncologic... 34 0.30
28PBP2_YEAST (P38151) PAB1-binding protein 2 32 1.5
29RL15_FRATT (Q5NHU9) 50S ribosomal protein L15 31 2.5
30RL15_BUCBP (Q89A84) 50S ribosomal protein L15 31 3.3
31AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial pr... 31 3.3
32RL15_METCA (Q605D1) 50S ribosomal protein L15 29 9.6
33CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.... 29 9.6
34NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleop... 29 9.6
35SYY_NITWN (Q3SS12) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosin... 29 9.6

>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375|
          Length = 606

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 26/70 (37%), Positives = 45/70 (64%)
 Frame = -2

Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351
           SSS++E+ IP  ++  V+G GG NL  IR+ISGA +++  ++    + I  + G   Q+R
Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593

Query: 350 VAQSLLQGFI 321
            A++L+Q F+
Sbjct: 594 CAENLVQAFV 603



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>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348
           +S+ EL IPN  +  ++G  G  + EIRQ+SGA++K+  A  GSSE  + I G    + +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320

Query: 347 AQSLL 333
           AQ L+
Sbjct: 321 AQYLI 325



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>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)|
          Length = 339

 Score = 50.8 bits (120), Expect = 3e-06
 Identities = 26/65 (40%), Positives = 40/65 (61%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348
           +S+ EL IPN  +  ++G  G  + EIRQ+SGA++K+  A  GSSE  + I G    + +
Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320

Query: 347 AQSLL 333
           AQ L+
Sbjct: 321 AQYLI 325



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>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = -2

Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369
           A +   + ++ EL IPN+ +  ++G  G N+ EIRQ+SGA++K+     GSS   + I G
Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331

Query: 368 MAHQVRVAQSLL 333
            A  + +AQ L+
Sbjct: 332 SAASISLAQYLI 343



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>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)|
          Length = 356

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = -2

Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369
           A +   + ++ EL IPN+ +  ++G  G N+ EIRQ+SGA++K+     GSS   + I G
Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331

Query: 368 MAHQVRVAQSLL 333
            A  + +AQ L+
Sbjct: 332 SAASISLAQYLI 343



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>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic|
           acid-binding protein SUB2.3)
          Length = 356

 Score = 49.7 bits (117), Expect = 7e-06
 Identities = 26/72 (36%), Positives = 43/72 (59%)
 Frame = -2

Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369
           A +   + ++ EL IPN+ +  ++G  G N+ EIRQ+SGA++K+     GSS   + I G
Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331

Query: 368 MAHQVRVAQSLL 333
            A  + +AQ L+
Sbjct: 332 SAASISLAQYLI 343



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>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC|
           stretch-binding protein) (CSBP)
          Length = 463

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = -2

Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432
           + YDY+ A G    R  Y    D+ G    + ++ IP     S++G GG  + +IR  SG
Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418

Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321
           A +K+ E   GS + I+ I G   Q++ AQ LLQ  +
Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455



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>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
          Length = 463

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = -2

Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432
           + YDY+ A G    R  Y    D+ G    + ++ IP     S++G GG  + +IR  SG
Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418

Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321
           A +K+ E   GS + I+ I G   Q++ AQ LLQ  +
Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455



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>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K|
          Length = 463

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = -2

Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432
           + YDY+ A G    R  Y    D+ G    + ++ IP     S++G GG  + +IR  SG
Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418

Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321
           A +K+ E   GS + I+ I G   Q++ AQ LLQ  +
Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455



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>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)|
           (Transformation up-regulated nuclear protein) (TUNP)
          Length = 463

 Score = 48.5 bits (114), Expect = 2e-05
 Identities = 33/97 (34%), Positives = 50/97 (51%)
 Frame = -2

Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432
           + YDY+ A G    R  Y    D+ G    + ++ IP     S++G GG  + +IR  SG
Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418

Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321
           A +K+ E   GS + I+ I G   Q++ AQ LLQ  +
Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455



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>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative|
           heterogeneous nuclear ribonucleoprotein X) (hnRNP X)
           (CTBP) (CBP)
          Length = 362

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 24/65 (36%), Positives = 40/65 (61%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348
           ++S EL IPN  +  ++G  G  + EIRQ+SGA++K+     GS++  + I G A  + +
Sbjct: 284 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 343

Query: 347 AQSLL 333
           AQ L+
Sbjct: 344 AQYLI 348



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>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)|
          Length = 365

 Score = 47.8 bits (112), Expect = 3e-05
 Identities = 24/65 (36%), Positives = 40/65 (61%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348
           ++S EL IPN  +  ++G  G  + EIRQ+SGA++K+     GS++  + I G A  + +
Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346

Query: 347 AQSLL 333
           AQ L+
Sbjct: 347 AQYLI 351



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>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 45.8 bits (107), Expect = 1e-04
 Identities = 24/68 (35%), Positives = 38/68 (55%)
 Frame = -2

Query: 536 GYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQ 357
           G  +SS E  +PN  +  V+G  G  ++EIRQ+SGA +K+     G+ E  + I G    
Sbjct: 238 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVS 297

Query: 356 VRVAQSLL 333
           + +AQ L+
Sbjct: 298 IALAQYLI 305



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>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)|
          Length = 403

 Score = 44.3 bits (103), Expect = 3e-04
 Identities = 23/65 (35%), Positives = 37/65 (56%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348
           +SS E  +PN  +  V+G  G  ++EIRQ+SGA +K+     G+ E  + I G    + +
Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL 300

Query: 347 AQSLL 333
           AQ L+
Sbjct: 301 AQYLI 305



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>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein|
          Length = 560

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = -2

Query: 569 REDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSE 390
           RE  +      G     +E+R+P  +++ ++G  G N+ ++R+ +GAR+  ++      E
Sbjct: 38  RESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDE 96

Query: 389 SIMEIQGMAHQVRVAQSLLQGFIGAN 312
            ++ I G   QV  A++ +   +  N
Sbjct: 97  RVLLISGFPVQVCKAKAAIHQILTEN 122



 Score = 29.6 bits (65), Expect = 7.3
 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%)
 Frame = -2

Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGS--SESIMEIQGMAHQVRVAQ 342
           +L +P  S+  ++G GG  +  I + SGA++   +   G+     +++I G   +V  A+
Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAK 187

Query: 341 SLL 333
            L+
Sbjct: 188 HLI 190



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>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein|
          Length = 606

 Score = 40.0 bits (92), Expect = 0.005
 Identities = 20/86 (23%), Positives = 43/86 (50%)
 Frame = -2

Query: 569 REDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSE 390
           RE  +      G     +E+R+P  +++ ++G  G N+ ++R+ +GAR+  ++      E
Sbjct: 38  RESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDE 96

Query: 389 SIMEIQGMAHQVRVAQSLLQGFIGAN 312
            ++ I G   QV  A++ +   +  N
Sbjct: 97  RVLLISGFPVQVCKAKAAIHQILTEN 122



 Score = 30.4 bits (67), Expect = 4.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%)
 Frame = -2

Query: 521 SVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGS--SESIMEIQGMAHQVRV 348
           S +L +P  S+  ++G GG  +  I + SGA++   +   G+     +++I G   +V  
Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185

Query: 347 AQSLL 333
           A+ L+
Sbjct: 186 AKHLI 190



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>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding|
           protein 3)
          Length = 572

 Score = 39.7 bits (91), Expect = 0.007
 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
 Frame = -2

Query: 590 AAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLE 411
           A G+  GR D+   A         +   +P      V+G GG N+  I Q SGA ++L  
Sbjct: 336 ARGRGRGRGDWSVGAPG---GVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQR 392

Query: 410 ARPGSSESIME---IQGMAHQVRVAQSLLQGFIG 318
             P +S+  +    I+G+  Q+ VA+ L+   +G
Sbjct: 393 NPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVG 426



 Score = 31.6 bits (70), Expect = 1.9
 Identities = 14/61 (22%), Positives = 30/61 (49%)
 Frame = -2

Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336
           E ++P+  +  ++G GG  ++ I+  SG ++++     G  E    + G    +  A+ L
Sbjct: 81  EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRL 140

Query: 335 L 333
           L
Sbjct: 141 L 141



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>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral|
           antigen 2) (Astrocytic NOVA1-like RNA-binding protein)
          Length = 492

 Score = 38.5 bits (88), Expect = 0.016
 Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
 Frame = -2

Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348
           +++ IP+ +  S++G GG  + ++++ +GA +KL +++   PG++E +  +QG A  +  
Sbjct: 35  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 94

Query: 347 AQSLL 333
             S +
Sbjct: 95  VHSFI 99



 Score = 33.1 bits (74), Expect = 0.66
 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
 Frame = -2

Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQGMAHQV 354
           +   +L +PNS+   ++G GG  +  + + SGA ++L +   G +  E ++ + G   QV
Sbjct: 130 AKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQV 189

Query: 353 RVAQSLL 333
             A S +
Sbjct: 190 HKAVSAI 196



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>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP)
          Length = 651

 Score = 36.6 bits (83), Expect = 0.060
 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%)
 Frame = -2

Query: 506 IPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSL 336
           +P      ++G GG  +  I Q SGAR++L  + P +++  M+   I+G   Q+  A+ L
Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438

Query: 335 LQGFIG 318
           ++  IG
Sbjct: 439 IEEKIG 444



 Score = 33.9 bits (76), Expect = 0.39
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = -2

Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336
           E ++P+  +  ++G GG  ++ I+Q SG ++++     G  E    + G    V+ A+ L
Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 159

Query: 335 LQGFI 321
           L   +
Sbjct: 160 LDQIV 164



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>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Fragment)
          Length = 474

 Score = 36.2 bits (82), Expect = 0.078
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = -2

Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348
           +++ IP+ +  S++G GG  + ++++ +GA +KL +++   PG++E +  IQG       
Sbjct: 51  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 106

Query: 347 AQSLLQGFI 321
           A + + GFI
Sbjct: 107 ALNAVHGFI 115



 Score = 33.5 bits (75), Expect = 0.51
 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
 Frame = -2

Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQGMAHQVRVA 345
           V++ +PNS+   ++G GG  +  I + SGA ++L +   G +  E ++ + G   Q R A
Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 208

Query: 344 QSLL 333
             L+
Sbjct: 209 VELI 212



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>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (MAP2 RNA trans-acting protein 1) (MARTA1)
          Length = 721

 Score = 36.2 bits (82), Expect = 0.078
 Identities = 17/70 (24%), Positives = 37/70 (52%)
 Frame = -2

Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351
           +S + E R+P+  +  ++G GG  + +I+Q SG ++++     G  E  + + G    V+
Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203

Query: 350 VAQSLLQGFI 321
            A+ +L   +
Sbjct: 204 KAKMMLDDIV 213



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>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding|
           protein 2) (KH type splicing regulatory protein) (KSRP)
           (p75)
          Length = 707

 Score = 36.2 bits (82), Expect = 0.078
 Identities = 17/70 (24%), Positives = 37/70 (52%)
 Frame = -2

Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351
           +S + E R+P+  +  ++G GG  + +I+Q SG ++++     G  E  + + G    V+
Sbjct: 143 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 202

Query: 350 VAQSLLQGFI 321
            A+ +L   +
Sbjct: 203 KAKMMLDDIV 212



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>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Ventral neuron-specific protein 1)
           (Fragment)
          Length = 493

 Score = 36.2 bits (82), Expect = 0.078
 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
 Frame = -2

Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348
           +++ IP+ +  S++G GG  + ++++ +GA +KL +++   PG++E +  IQG       
Sbjct: 38  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 93

Query: 347 AQSLLQGFI 321
           A + + GFI
Sbjct: 94  ALNAVHGFI 102



 Score = 34.7 bits (78), Expect = 0.23
 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = -2

Query: 542 VTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQG 369
           +T   ++ V++ +PNS+   ++G GG  +  I + SGA ++L +   G +  E ++ + G
Sbjct: 152 MTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG 211

Query: 368 MAHQVRVAQSLL 333
              Q R A  L+
Sbjct: 212 EPEQNRKAVELI 223



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>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding|
           protein 1) (FBP) (DNA helicase V) (HDH V)
          Length = 643

 Score = 35.4 bits (80), Expect = 0.13
 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%)
 Frame = -2

Query: 506 IPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSL 336
           +P      ++G GG  +  I Q SGAR++L    P +++  M+   I+G   Q+  A+ L
Sbjct: 382 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 441

Query: 335 LQGFIG 318
           ++  IG
Sbjct: 442 IEEKIG 447



 Score = 33.9 bits (76), Expect = 0.39
 Identities = 16/65 (24%), Positives = 33/65 (50%)
 Frame = -2

Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336
           E ++P+  +  ++G GG  ++ I+Q SG ++++     G  E    + G    V+ A+ L
Sbjct: 103 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 162

Query: 335 LQGFI 321
           L   +
Sbjct: 163 LDQIV 167



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>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2|
          Length = 769

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 16/65 (24%), Positives = 34/65 (52%)
 Frame = -2

Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336
           E R+P+  +  ++G GG  + +I+Q SG ++++     G  E  + + G    V+ A+ +
Sbjct: 212 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLM 271

Query: 335 LQGFI 321
           L   +
Sbjct: 272 LDDIV 276



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>DLEC1_HUMAN (Q9Y238) Deleted in lung and esophageal cancer protein 1 (Deleted in|
            lung cancer protein 1) (DLC-1)
          Length = 1755

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 17/57 (29%), Positives = 30/57 (52%)
 Frame = +1

Query: 361  CAIPWISMMDSEEPGRASSNFILAPDIWRISARLTPPAPTTDSKELFGILSSTELLE 531
            C   W  +M  +EP +A+  F ++P+   + AR     PT+ + ++F    S+EL E
Sbjct: 1665 CRSYWTMLMGQQEPAKAAVAFRVSPNSGLLEARSANAPPTSIALQVFFTARSSELYE 1721



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>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral|
           antigen 1) (Onconeural ventral antigen 1)
           (Paraneoplastic Ri antigen) (Ventral neuron-specific
           protein 1)
          Length = 510

 Score = 34.3 bits (77), Expect = 0.30
 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
 Frame = -2

Query: 542 VTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQG 369
           +T   ++ V++ +PNS+   ++G GG  +  + + SGA ++L +   G +  E ++ + G
Sbjct: 169 MTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG 228

Query: 368 MAHQVRVAQSLL 333
              Q R A  L+
Sbjct: 229 EPEQNRKAVELI 240



 Score = 33.5 bits (75), Expect = 0.51
 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%)
 Frame = -2

Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR------PGSSESIMEIQGMAHQ 357
           +++ IP+ +  S++G GG  + ++++ +GA +KL +        PG++E +  IQG    
Sbjct: 52  LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVE- 110

Query: 356 VRVAQSLLQGFI 321
              A + + GFI
Sbjct: 111 ---ALNAVHGFI 119



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>PBP2_YEAST (P38151) PAB1-binding protein 2|
          Length = 413

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%)
 Frame = -2

Query: 575 HGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPG- 399
           HG ED     ++      S+ L IP+  +  ++G  G  L EI  +S A+   L A P  
Sbjct: 138 HGNEDNGEDIEI------SINLLIPHHLMGCIIGKRGSRLREIEDLSAAK---LFASPNQ 188

Query: 398 ---SSESIMEIQGMAHQVRVA 345
              S++ I+ I G+   + +A
Sbjct: 189 LLLSNDRILTINGVPDAIHIA 209



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>RL15_FRATT (Q5NHU9) 50S ribosomal protein L15|
          Length = 143

 Score = 31.2 bits (69), Expect = 2.5
 Identities = 17/42 (40%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376
           G   T GKGH+  G  ARSG  H+     G +PL+  +P  G
Sbjct: 26  GLGKTSGKGHK--GQKARSGGYHKVGFEGGQMPLQRRLPKFG 65



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>RL15_BUCBP (Q89A84) 50S ribosomal protein L15|
          Length = 147

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = +2

Query: 251 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376
           GF  T G+GH+  G  +RSGC  +     G +PL   +P  G
Sbjct: 26  GFGKTSGRGHK--GQKSRSGCKIRRGFEGGQMPLYRRIPKFG 65



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>AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial precursor|
           (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase
           anchor protein 149 kDa) (AKAP 149) (Dual specificity
           A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid
           A-kinase anchor prot
          Length = 903

 Score = 30.8 bits (68), Expect = 3.3
 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 5/98 (5%)
 Frame = -2

Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSV-----ELRIPNSSLESVVGAGGVNLAEI 447
           N+ D  ++   +   E +Q A    G +   V     E+ +P   +  ++G  G  ++ +
Sbjct: 576 NSMDSVDSCCSLKKTESFQNAQ--AGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFL 633

Query: 446 RQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 333
           +Q SGA++ +       S  I  I+G  H V  A +L+
Sbjct: 634 KQTSGAKIYISTLPYTQSVQICHIEGSQHHVDKALNLI 671



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>RL15_METCA (Q605D1) 50S ribosomal protein L15|
          Length = 144

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
 Frame = +2

Query: 251 GFSSTLGK--GHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376
           G  STLGK  G    G  AR+G  H+     G +PL+  +P +G
Sbjct: 22  GIGSTLGKTCGRGHKGQKARAGGFHKVGFEGGQMPLQRRLPKVG 65



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>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal|
           transduction protein CBL-B) (SH3-binding protein CBL-B)
          Length = 982

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -1

Query: 465 CQSSRDPPDIWCKNEVT*S--PSWFFGIHHGDPRYGTPSSS 349
           C+      D WC  +++ +  PS     H G P+ G PSSS
Sbjct: 592 CRDQSTQHDAWCTRDISGASQPSICRVAHDGSPKLGVPSSS 632



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>NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88|
           kDa nuclear pore complex protein)
          Length = 741

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -3

Query: 115 PRMYC*TCLFPCLFYPLLSEIH 50
           P M C T  + CL +PLLS +H
Sbjct: 478 PTMICITSTYECLIWPLLSTVH 499



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>SYY_NITWN (Q3SS12) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA|
           ligase) (TyrRS)
          Length = 417

 Score = 29.3 bits (64), Expect = 9.6
 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%)
 Frame = -2

Query: 596 TEAAGQMHGREDYQRAADVT-------GYSSSSVELRIPNSSLESVVG 474
           TEA   +HGR++ ++AAD           S S   L IP S L S  G
Sbjct: 304 TEATALLHGRDEAEKAADTARTTFEQGAISESLPTLDIPRSELASGAG 351


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 92,673,924
Number of Sequences: 219361
Number of extensions: 1957351
Number of successful extensions: 4426
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 4262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4425
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5538924943
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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