ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61n23 |
|---|---|
| Clone Library Name | barley_pub |
>Y4837_ARATH (P58223) Probable nucleic acid binding protein At4g18375| Length = 606 Score = 54.7 bits (130), Expect = 2e-07 Identities = 26/70 (37%), Positives = 45/70 (64%) Frame = -2 Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351 SSS++E+ IP ++ V+G GG NL IR+ISGA +++ ++ + I + G Q+R Sbjct: 534 SSSALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKTSHGDHIALLSGTLEQMR 593 Query: 350 VAQSLLQGFI 321 A++L+Q F+ Sbjct: 594 CAENLVQAFV 603
>PCBP3_MOUSE (P57722) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/65 (40%), Positives = 40/65 (61%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348 +S+ EL IPN + ++G G + EIRQ+SGA++K+ A GSSE + I G + + Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320 Query: 347 AQSLL 333 AQ L+ Sbjct: 321 AQYLI 325
>PCBP3_HUMAN (P57721) Poly(rC)-binding protein 3 (Alpha-CP3)| Length = 339 Score = 50.8 bits (120), Expect = 3e-06 Identities = 26/65 (40%), Positives = 40/65 (61%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348 +S+ EL IPN + ++G G + EIRQ+SGA++K+ A GSSE + I G + + Sbjct: 261 ASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIANATEGSSERQITITGTPANISL 320 Query: 347 AQSLL 333 AQ L+ Sbjct: 321 AQYLI 325
>PCBP1_RABIT (O19048) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 49.7 bits (117), Expect = 7e-06 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -2 Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369 A + + ++ EL IPN+ + ++G G N+ EIRQ+SGA++K+ GSS + I G Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331 Query: 368 MAHQVRVAQSLL 333 A + +AQ L+ Sbjct: 332 SAASISLAQYLI 343
>PCBP1_MOUSE (P60335) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1)| Length = 356 Score = 49.7 bits (117), Expect = 7e-06 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -2 Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369 A + + ++ EL IPN+ + ++G G N+ EIRQ+SGA++K+ GSS + I G Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331 Query: 368 MAHQVRVAQSLL 333 A + +AQ L+ Sbjct: 332 SAASISLAQYLI 343
>PCBP1_HUMAN (Q15365) Poly(rC)-binding protein 1 (Alpha-CP1) (hnRNP-E1) (Nucleic| acid-binding protein SUB2.3) Length = 356 Score = 49.7 bits (117), Expect = 7e-06 Identities = 26/72 (36%), Positives = 43/72 (59%) Frame = -2 Query: 548 ADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQG 369 A + + ++ EL IPN+ + ++G G N+ EIRQ+SGA++K+ GSS + I G Sbjct: 272 ASLDASTQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANPVEGSSGRQVTITG 331 Query: 368 MAHQVRVAQSLL 333 A + +AQ L+ Sbjct: 332 SAASISLAQYLI 343
>HNRPK_RAT (P61980) Heterogeneous nuclear ribonucleoprotein K (dC| stretch-binding protein) (CSBP) Length = 463 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/97 (34%), Positives = 50/97 (51%) Frame = -2 Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432 + YDY+ A G R Y D+ G + ++ IP S++G GG + +IR SG Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418 Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321 A +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_RABIT (O19049) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| Length = 463 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/97 (34%), Positives = 50/97 (51%) Frame = -2 Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432 + YDY+ A G R Y D+ G + ++ IP S++G GG + +IR SG Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418 Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321 A +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_MOUSE (P61979) Heterogeneous nuclear ribonucleoprotein K| Length = 463 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/97 (34%), Positives = 50/97 (51%) Frame = -2 Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432 + YDY+ A G R Y D+ G + ++ IP S++G GG + +IR SG Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418 Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321 A +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>HNRPK_HUMAN (P61978) Heterogeneous nuclear ribonucleoprotein K (hnRNP K)| (Transformation up-regulated nuclear protein) (TUNP) Length = 463 Score = 48.5 bits (114), Expect = 2e-05 Identities = 33/97 (34%), Positives = 50/97 (51%) Frame = -2 Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISG 432 + YDY+ A G R Y D+ G + ++ IP S++G GG + +IR SG Sbjct: 367 SGYDYSYAGG----RGSY---GDLGG-PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESG 418 Query: 431 ARMKLLEARPGSSESIMEIQGMAHQVRVAQSLLQGFI 321 A +K+ E GS + I+ I G Q++ AQ LLQ + Sbjct: 419 ASIKIDEPLEGSEDRIITITGTQDQIQNAQYLLQNSV 455
>PCBP2_MOUSE (Q61990) Poly(rC)-binding protein 2 (Alpha-CP2) (Putative| heterogeneous nuclear ribonucleoprotein X) (hnRNP X) (CTBP) (CBP) Length = 362 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/65 (36%), Positives = 40/65 (61%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348 ++S EL IPN + ++G G + EIRQ+SGA++K+ GS++ + I G A + + Sbjct: 284 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 343 Query: 347 AQSLL 333 AQ L+ Sbjct: 344 AQYLI 348
>PCBP2_HUMAN (Q15366) Poly(rC)-binding protein 2 (Alpha-CP2) (hnRNP-E2)| Length = 365 Score = 47.8 bits (112), Expect = 3e-05 Identities = 24/65 (36%), Positives = 40/65 (61%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348 ++S EL IPN + ++G G + EIRQ+SGA++K+ GS++ + I G A + + Sbjct: 287 TTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANPVEGSTDRQVTITGSAASISL 346 Query: 347 AQSLL 333 AQ L+ Sbjct: 347 AQYLI 351
>PCBP4_HUMAN (P57723) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 45.8 bits (107), Expect = 1e-04 Identities = 24/68 (35%), Positives = 38/68 (55%) Frame = -2 Query: 536 GYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQ 357 G +SS E +PN + V+G G ++EIRQ+SGA +K+ G+ E + I G Sbjct: 238 GTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVS 297 Query: 356 VRVAQSLL 333 + +AQ L+ Sbjct: 298 IALAQYLI 305
>PCBP4_MOUSE (P57724) Poly(rC)-binding protein 4 (Alpha-CP4)| Length = 403 Score = 44.3 bits (103), Expect = 3e-04 Identities = 23/65 (35%), Positives = 37/65 (56%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRV 348 +SS E +PN + V+G G ++EIRQ+SGA +K+ G+ E + I G + + Sbjct: 241 TSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKIGNQAEGAGERHVTITGSPVSIAL 300 Query: 347 AQSLL 333 AQ L+ Sbjct: 301 AQYLI 305
>TDRKH_MOUSE (Q80VL1) Tudor and KH domain-containing protein| Length = 560 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/86 (23%), Positives = 43/86 (50%) Frame = -2 Query: 569 REDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSE 390 RE + G +E+R+P +++ ++G G N+ ++R+ +GAR+ ++ E Sbjct: 38 RESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDE 96 Query: 389 SIMEIQGMAHQVRVAQSLLQGFIGAN 312 ++ I G QV A++ + + N Sbjct: 97 RVLLISGFPVQVCKAKAAIHQILTEN 122 Score = 29.6 bits (65), Expect = 7.3 Identities = 16/63 (25%), Positives = 33/63 (52%), Gaps = 2/63 (3%) Frame = -2 Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGS--SESIMEIQGMAHQVRVAQ 342 +L +P S+ ++G GG + I + SGA++ + G+ +++I G +V A+ Sbjct: 128 QLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAAAK 187 Query: 341 SLL 333 L+ Sbjct: 188 HLI 190
>TDRKH_HUMAN (Q9Y2W6) Tudor and KH domain-containing protein| Length = 606 Score = 40.0 bits (92), Expect = 0.005 Identities = 20/86 (23%), Positives = 43/86 (50%) Frame = -2 Query: 569 REDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSE 390 RE + G +E+R+P +++ ++G G N+ ++R+ +GAR+ ++ E Sbjct: 38 RESREERLTFVGEDDIEIEMRVPQEAVKLIIGRQGANIKQLRKQTGARID-VDTEDVGDE 96 Query: 389 SIMEIQGMAHQVRVAQSLLQGFIGAN 312 ++ I G QV A++ + + N Sbjct: 97 RVLLISGFPVQVCKAKAAIHQILTEN 122 Score = 30.4 bits (67), Expect = 4.3 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 2/65 (3%) Frame = -2 Query: 521 SVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGS--SESIMEIQGMAHQVRV 348 S +L +P S+ ++G GG + I + SGA++ + G+ +++I G +V Sbjct: 126 SEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESEGTLLLSRLIKISGTQKEVAA 185 Query: 347 AQSLL 333 A+ L+ Sbjct: 186 AKHLI 190
>FUBP3_HUMAN (Q96I24) Far upstream element-binding protein 3 (FUSE-binding| protein 3) Length = 572 Score = 39.7 bits (91), Expect = 0.007 Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 3/94 (3%) Frame = -2 Query: 590 AAGQMHGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLE 411 A G+ GR D+ A + +P V+G GG N+ I Q SGA ++L Sbjct: 336 ARGRGRGRGDWSVGAPG---GVQEITYTVPADKCGLVIGKGGENIKSINQQSGAHVELQR 392 Query: 410 ARPGSSESIME---IQGMAHQVRVAQSLLQGFIG 318 P +S+ + I+G+ Q+ VA+ L+ +G Sbjct: 393 NPPPNSDPNLRRFTIRGVPQQIEVARQLIDEKVG 426 Score = 31.6 bits (70), Expect = 1.9 Identities = 14/61 (22%), Positives = 30/61 (49%) Frame = -2 Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336 E ++P+ + ++G GG ++ I+ SG ++++ G E + G + A+ L Sbjct: 81 EFKVPDKMVGFIIGRGGEQISRIQAESGCKIQIASESSGIPERPCVLTGTPESIEQAKRL 140 Query: 335 L 333 L Sbjct: 141 L 141
>NOVA2_HUMAN (Q9UNW9) RNA-binding protein Nova-2 (Neuro-oncological ventral| antigen 2) (Astrocytic NOVA1-like RNA-binding protein) Length = 492 Score = 38.5 bits (88), Expect = 0.016 Identities = 17/65 (26%), Positives = 40/65 (61%), Gaps = 3/65 (4%) Frame = -2 Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348 +++ IP+ + S++G GG + ++++ +GA +KL +++ PG++E + +QG A + Sbjct: 35 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNA 94 Query: 347 AQSLL 333 S + Sbjct: 95 VHSFI 99 Score = 33.1 bits (74), Expect = 0.66 Identities = 18/67 (26%), Positives = 35/67 (52%), Gaps = 2/67 (2%) Frame = -2 Query: 527 SSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQGMAHQV 354 + +L +PNS+ ++G GG + + + SGA ++L + G + E ++ + G QV Sbjct: 130 AKQAKLIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQERVVTVSGEPEQV 189 Query: 353 RVAQSLL 333 A S + Sbjct: 190 HKAVSAI 196
>FUBP1_MOUSE (Q91WJ8) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) Length = 651 Score = 36.6 bits (83), Expect = 0.060 Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 3/66 (4%) Frame = -2 Query: 506 IPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSL 336 +P ++G GG + I Q SGAR++L + P +++ M+ I+G Q+ A+ L Sbjct: 379 VPTGKTGLIIGKGGETIKSISQQSGARIELQRSPPPNADPNMKLFTIRGTPQQIDYARQL 438 Query: 335 LQGFIG 318 ++ IG Sbjct: 439 IEEKIG 444 Score = 33.9 bits (76), Expect = 0.39 Identities = 16/65 (24%), Positives = 33/65 (50%) Frame = -2 Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336 E ++P+ + ++G GG ++ I+Q SG ++++ G E + G V+ A+ L Sbjct: 100 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 159 Query: 335 LQGFI 321 L + Sbjct: 160 LDQIV 164
>NOVA1_RAT (Q80WA4) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Fragment) Length = 474 Score = 36.2 bits (82), Expect = 0.078 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Frame = -2 Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348 +++ IP+ + S++G GG + ++++ +GA +KL +++ PG++E + IQG Sbjct: 51 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 106 Query: 347 AQSLLQGFI 321 A + + GFI Sbjct: 107 ALNAVHGFI 115 Score = 33.5 bits (75), Expect = 0.51 Identities = 19/64 (29%), Positives = 35/64 (54%), Gaps = 2/64 (3%) Frame = -2 Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQGMAHQVRVA 345 V++ +PNS+ ++G GG + I + SGA ++L + G + E ++ + G Q R A Sbjct: 149 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSGEPEQNRKA 208 Query: 344 QSLL 333 L+ Sbjct: 209 VELI 212
>FUBP2_RAT (Q99PF5) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (MAP2 RNA trans-acting protein 1) (MARTA1) Length = 721 Score = 36.2 bits (82), Expect = 0.078 Identities = 17/70 (24%), Positives = 37/70 (52%) Frame = -2 Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351 +S + E R+P+ + ++G GG + +I+Q SG ++++ G E + + G V+ Sbjct: 144 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 203 Query: 350 VAQSLLQGFI 321 A+ +L + Sbjct: 204 KAKMMLDDIV 213
>FUBP2_HUMAN (Q92945) Far upstream element-binding protein 2 (FUSE-binding| protein 2) (KH type splicing regulatory protein) (KSRP) (p75) Length = 707 Score = 36.2 bits (82), Expect = 0.078 Identities = 17/70 (24%), Positives = 37/70 (52%) Frame = -2 Query: 530 SSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVR 351 +S + E R+P+ + ++G GG + +I+Q SG ++++ G E + + G V+ Sbjct: 143 TSMTEEYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGAPESVQ 202 Query: 350 VAQSLLQGFI 321 A+ +L + Sbjct: 203 KAKMMLDDIV 212
>NOVA1_MOUSE (Q9JKN6) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Ventral neuron-specific protein 1) (Fragment) Length = 493 Score = 36.2 bits (82), Expect = 0.078 Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 3/69 (4%) Frame = -2 Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR---PGSSESIMEIQGMAHQVRV 348 +++ IP+ + S++G GG + ++++ +GA +KL +++ PG++E + IQG Sbjct: 38 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIE---- 93 Query: 347 AQSLLQGFI 321 A + + GFI Sbjct: 94 ALNAVHGFI 102 Score = 34.7 bits (78), Expect = 0.23 Identities = 20/72 (27%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = -2 Query: 542 VTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQG 369 +T ++ V++ +PNS+ ++G GG + I + SGA ++L + G + E ++ + G Sbjct: 152 MTTSRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQERVVTVSG 211 Query: 368 MAHQVRVAQSLL 333 Q R A L+ Sbjct: 212 EPEQNRKAVELI 223
>FUBP1_HUMAN (Q96AE4) Far upstream element-binding protein 1 (FUSE-binding| protein 1) (FBP) (DNA helicase V) (HDH V) Length = 643 Score = 35.4 bits (80), Expect = 0.13 Identities = 20/66 (30%), Positives = 35/66 (53%), Gaps = 3/66 (4%) Frame = -2 Query: 506 IPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIME---IQGMAHQVRVAQSL 336 +P ++G GG + I Q SGAR++L P +++ M+ I+G Q+ A+ L Sbjct: 382 VPTGKTGLIIGKGGETIKSISQQSGARIELQRNPPPNADPNMKLFTIRGTPQQIDYARQL 441 Query: 335 LQGFIG 318 ++ IG Sbjct: 442 IEEKIG 447 Score = 33.9 bits (76), Expect = 0.39 Identities = 16/65 (24%), Positives = 33/65 (50%) Frame = -2 Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336 E ++P+ + ++G GG ++ I+Q SG ++++ G E + G V+ A+ L Sbjct: 103 EYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPESVQSAKRL 162 Query: 335 LQGFI 321 L + Sbjct: 163 LDQIV 167
>ZBP2_CHICK (Q8UVD9) Zipcode-binding protein 2| Length = 769 Score = 34.3 bits (77), Expect = 0.30 Identities = 16/65 (24%), Positives = 34/65 (52%) Frame = -2 Query: 515 ELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSL 336 E R+P+ + ++G GG + +I+Q SG ++++ G E + + G V+ A+ + Sbjct: 212 EYRVPDGMVGLIIGRGGEQINKIQQDSGCKVQISPDSGGLPERSVSLTGSPEAVQKAKLM 271 Query: 335 LQGFI 321 L + Sbjct: 272 LDDIV 276
>DLEC1_HUMAN (Q9Y238) Deleted in lung and esophageal cancer protein 1 (Deleted in| lung cancer protein 1) (DLC-1) Length = 1755 Score = 34.3 bits (77), Expect = 0.30 Identities = 17/57 (29%), Positives = 30/57 (52%) Frame = +1 Query: 361 CAIPWISMMDSEEPGRASSNFILAPDIWRISARLTPPAPTTDSKELFGILSSTELLE 531 C W +M +EP +A+ F ++P+ + AR PT+ + ++F S+EL E Sbjct: 1665 CRSYWTMLMGQQEPAKAAVAFRVSPNSGLLEARSANAPPTSIALQVFFTARSSELYE 1721
>NOVA1_HUMAN (P51513) RNA-binding protein Nova-1 (Neuro-oncological ventral| antigen 1) (Onconeural ventral antigen 1) (Paraneoplastic Ri antigen) (Ventral neuron-specific protein 1) Length = 510 Score = 34.3 bits (77), Expect = 0.30 Identities = 19/72 (26%), Positives = 39/72 (54%), Gaps = 2/72 (2%) Frame = -2 Query: 542 VTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPGSS--ESIMEIQG 369 +T ++ V++ +PNS+ ++G GG + + + SGA ++L + G + E ++ + G Sbjct: 169 MTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQERVVTVSG 228 Query: 368 MAHQVRVAQSLL 333 Q R A L+ Sbjct: 229 EPEQNRKAVELI 240 Score = 33.5 bits (75), Expect = 0.51 Identities = 20/72 (27%), Positives = 40/72 (55%), Gaps = 6/72 (8%) Frame = -2 Query: 518 VELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEAR------PGSSESIMEIQGMAHQ 357 +++ IP+ + S++G GG + ++++ +GA +KL + PG++E + IQG Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPGTTERVCLIQGTVE- 110 Query: 356 VRVAQSLLQGFI 321 A + + GFI Sbjct: 111 ---ALNAVHGFI 119
>PBP2_YEAST (P38151) PAB1-binding protein 2| Length = 413 Score = 32.0 bits (71), Expect = 1.5 Identities = 23/81 (28%), Positives = 38/81 (46%), Gaps = 4/81 (4%) Frame = -2 Query: 575 HGREDYQRAADVTGYSSSSVELRIPNSSLESVVGAGGVNLAEIRQISGARMKLLEARPG- 399 HG ED ++ S+ L IP+ + ++G G L EI +S A+ L A P Sbjct: 138 HGNEDNGEDIEI------SINLLIPHHLMGCIIGKRGSRLREIEDLSAAK---LFASPNQ 188 Query: 398 ---SSESIMEIQGMAHQVRVA 345 S++ I+ I G+ + +A Sbjct: 189 LLLSNDRILTINGVPDAIHIA 209
>RL15_FRATT (Q5NHU9) 50S ribosomal protein L15| Length = 143 Score = 31.2 bits (69), Expect = 2.5 Identities = 17/42 (40%), Positives = 22/42 (52%) Frame = +2 Query: 251 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376 G T GKGH+ G ARSG H+ G +PL+ +P G Sbjct: 26 GLGKTSGKGHK--GQKARSGGYHKVGFEGGQMPLQRRLPKFG 65
>RL15_BUCBP (Q89A84) 50S ribosomal protein L15| Length = 147 Score = 30.8 bits (68), Expect = 3.3 Identities = 16/42 (38%), Positives = 22/42 (52%) Frame = +2 Query: 251 GFSSTLGKGHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376 GF T G+GH+ G +RSGC + G +PL +P G Sbjct: 26 GFGKTSGRGHK--GQKSRSGCKIRRGFEGGQMPLYRRIPKFG 65
>AKAP1_HUMAN (Q92667) A kinase anchor protein 1, mitochondrial precursor| (Protein kinase A-anchoring protein 1) (PRKA1) (A-kinase anchor protein 149 kDa) (AKAP 149) (Dual specificity A-kinase-anchoring protein 1) (D-AKAP-1) (Spermatid A-kinase anchor prot Length = 903 Score = 30.8 bits (68), Expect = 3.3 Identities = 23/98 (23%), Positives = 44/98 (44%), Gaps = 5/98 (5%) Frame = -2 Query: 611 NAYDYTEAAGQMHGREDYQRAADVTGYSSSSV-----ELRIPNSSLESVVGAGGVNLAEI 447 N+ D ++ + E +Q A G + V E+ +P + ++G G ++ + Sbjct: 576 NSMDSVDSCCSLKKTESFQNAQ--AGSNPKKVDLIIWEIEVPKHLVGRLIGKQGRYVSFL 633 Query: 446 RQISGARMKLLEARPGSSESIMEIQGMAHQVRVAQSLL 333 +Q SGA++ + S I I+G H V A +L+ Sbjct: 634 KQTSGAKIYISTLPYTQSVQICHIEGSQHHVDKALNLI 671
>RL15_METCA (Q605D1) 50S ribosomal protein L15| Length = 144 Score = 29.3 bits (64), Expect = 9.6 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 2/44 (4%) Frame = +2 Query: 251 GFSSTLGK--GHEKTGMAARSGC*HQ*SLAEGSVPLELGVPYLG 376 G STLGK G G AR+G H+ G +PL+ +P +G Sbjct: 22 GIGSTLGKTCGRGHKGQKARAGGFHKVGFEGGQMPLQRRLPKVG 65
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 29.3 bits (64), Expect = 9.6 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%) Frame = -1 Query: 465 CQSSRDPPDIWCKNEVT*S--PSWFFGIHHGDPRYGTPSSS 349 C+ D WC +++ + PS H G P+ G PSSS Sbjct: 592 CRDQSTQHDAWCTRDISGASQPSICRVAHDGSPKLGVPSSS 632
>NUP88_HUMAN (Q99567) Nuclear pore complex protein Nup88 (Nucleoporin Nup88) (88| kDa nuclear pore complex protein) Length = 741 Score = 29.3 bits (64), Expect = 9.6 Identities = 11/22 (50%), Positives = 14/22 (63%) Frame = -3 Query: 115 PRMYC*TCLFPCLFYPLLSEIH 50 P M C T + CL +PLLS +H Sbjct: 478 PTMICITSTYECLIWPLLSTVH 499
>SYY_NITWN (Q3SS12) Tyrosyl-tRNA synthetase (EC 6.1.1.1) (Tyrosine--tRNA| ligase) (TyrRS) Length = 417 Score = 29.3 bits (64), Expect = 9.6 Identities = 18/48 (37%), Positives = 23/48 (47%), Gaps = 7/48 (14%) Frame = -2 Query: 596 TEAAGQMHGREDYQRAADVT-------GYSSSSVELRIPNSSLESVVG 474 TEA +HGR++ ++AAD S S L IP S L S G Sbjct: 304 TEATALLHGRDEAEKAADTARTTFEQGAISESLPTLDIPRSELASGAG 351 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 92,673,924 Number of Sequences: 219361 Number of extensions: 1957351 Number of successful extensions: 4426 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4262 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4425 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5538924943 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
