ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n23
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_197154.1| Oryza sativa (japonica cultivar-group) putative... 147 5e-32
2dbj|AK066573.1| Oryza sativa (japonica cultivar-group) cDNA clon... 147 5e-32
3gb|AY105228.1| Zea mays PCO137689 mRNA sequence 96 2e-16
4gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 gen... 88 4e-14
5dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 88 4e-14
6gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 88 4e-14
7dbj|AK101909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 78 4e-11
8ref|NM_197176.1| Oryza sativa (japonica cultivar-group) putative... 66 1e-07
9gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 gen... 62 2e-06
10dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene f... 62 2e-06
11dbj|AK100638.1| Oryza sativa (japonica cultivar-group) cDNA clon... 50 0.009
12gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 geno... 46 0.14
13emb|CT573098.3| RP43-076G03, complete sequence 44 0.54
14emb|CT573270.1| RP43-049F09, complete sequence 44 0.54
15gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, com... 42 2.1
16gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete... 42 2.1
17gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hos... 42 2.1
18gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, comp... 42 2.1
19ref|NM_080191.2| Drosophila melanogaster weckle CG4148-RA (wek),... 42 2.1
20gb|AY051673.1| Drosophila melanogaster LD22579 full length cDNA 42 2.1
21gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57... 42 2.1
22emb|BX005095.6| Zebrafish DNA sequence from clone CH211-189B21, ... 42 2.1
23ref|XM_714593.1| Candida albicans SC5314 hypothetical protein (C... 40 8.4
24ref|XM_714468.1| Candida albicans SC5314 hypothetical protein (C... 40 8.4
25ref|NM_194339.1| Mus musculus BMS1-like, ribosome assembly prote... 40 8.4
26gb|BC030906.1| Mus musculus BMS1-like, ribosome assembly protein... 40 8.4
27gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complet... 40 8.4
28gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, compl... 40 8.4
29gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, compl... 40 8.4
30gb|AY346378.1| Penaeus monodon crustacean hyperglycemic hormone ... 40 8.4
31gb|DQ452367.1| Liriomyza huidobrensis clone 3 heat shock protein... 40 8.4
32gb|DQ452366.1| Liriomyza huidobrensis clone 2 heat shock protein... 40 8.4
33emb|AL607044.24| Human DNA sequence from clone RP13-392N17 on ch... 40 8.4
34emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on ch... 40 8.4
35gb|AF233295.1| Penaeus monodon crustacean hyperglycemic hormone ... 40 8.4
36emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chr... 40 8.4
37emb|AL928624.4| Mouse DNA sequence from clone RP23-454E10 on chr... 40 8.4
38gb|BC057054.1| Mus musculus BMS1-like, ribosome assembly protein... 40 8.4
39dbj|AK133013.1| Mus musculus adult male testis cDNA, RIKEN full-... 40 8.4
40gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, comple... 40 8.4
41dbj|AK162178.1| Mus musculus in vitro fertilized eggs cDNA, RIKE... 40 8.4
42ref|NM_076074.3| Caenorhabditis elegans T14G11.3 (T14G11.3) mRNA... 40 8.4
43gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, co... 40 8.4
44gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, compl... 40 8.4
45ref|XM_342746.2| PREDICTED: Rattus norvegicus BMS1-like, ribosom... 40 8.4
46gb|AF216203.1|AF216203 Limulus polyphemus mitochondrial genome, ... 40 8.4
47emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, ... 40 8.4
48dbj|AK129082.1| Mus musculus mRNA for mKIAA0187 protein 40 8.4
49gb|U41024.1| Caenorhabditis elegans cosmid T14G11, complete sequ... 40 8.4
50gb|BC091626.1| Xenopus laevis cDNA clone IMAGE:7198352, partial cds 40 8.4
51emb|BX469931.8| Zebrafish DNA sequence from clone DKEY-108D22 in... 40 8.4
52emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chro... 40 8.4
53dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CM... 40 8.4
54gb|BC092659.1| Rattus norvegicus BMS1-like, ribosome assembly pr... 40 8.4
55gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, comple... 40 8.4
56gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complet... 40 8.4
57gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete ge... 40 8.4 
>ref|NM_197154.1| Oryza sativa (japonica cultivar-group) putative RNA-binding protein
            (OSJNBa0041P03.3), mRNA
          Length = 2650

 Score =  147 bits (74), Expect = 5e-32
 Identities = 239/294 (81%)
 Strand = Plus / Minus

                                                                        
Query: 322  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2228 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2169

                                                                        
Query: 382  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
            |  ||||| || |||||||| ||| |||||||  | ||||||| ||| || ||||| |||
Sbjct: 2168 acaatggactcggaagaaccgggatgggcttcgtgcaacttcactctcgcgccagagatc 2109

                                                                        
Query: 442  tggcggatctctgctagattgacaccaccagctccaacaacagattccaaagaactattt 501
            || |||||||| |||||||||||||||||||||||||  |||||||||| | ||||||||
Sbjct: 2108 tgacggatctcagctagattgacaccaccagctccaatgacagattccagataactattt 2049

                                                                        
Query: 502  ggaatcctcagttcaacagagctacttgaataccctgtaacatctgccgctctttgataa 561
            |||||||  | ||| || |||| || || |||||| || | | ||| |  |||| | |||
Sbjct: 2048 ggaatccgaaattcgacggagccacctggatacccagtgagacctgacagtcttcggtaa 1989

                                                                  
Query: 562  tcctcacgtccatgcatctgtccggcagcctctgtgtaatcataagcattggaa 615
            |||||||||||||| |||||  | || ||||| || ||||||||||||||||||
Sbjct: 1988 tcctcacgtccatggatctgctcagcggcctcggtataatcataagcattggaa 1935
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>dbj|AK066573.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013072P14, full
            insert sequence
          Length = 2879

 Score =  147 bits (74), Expect = 5e-32
 Identities = 239/294 (81%)
 Strand = Plus / Minus

                                                                        
Query: 322  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2487 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2428

                                                                        
Query: 382  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
            |  ||||| || |||||||| ||| |||||||  | ||||||| ||| || ||||| |||
Sbjct: 2427 acaatggactcggaagaaccgggatgggcttcgtgcaacttcactctcgcgccagagatc 2368

                                                                        
Query: 442  tggcggatctctgctagattgacaccaccagctccaacaacagattccaaagaactattt 501
            || |||||||| |||||||||||||||||||||||||  |||||||||| | ||||||||
Sbjct: 2367 tgacggatctcagctagattgacaccaccagctccaatgacagattccagataactattt 2308

                                                                        
Query: 502  ggaatcctcagttcaacagagctacttgaataccctgtaacatctgccgctctttgataa 561
            |||||||  | ||| || |||| || || |||||| || | | ||| |  |||| | |||
Sbjct: 2307 ggaatccgaaattcgacggagccacctggatacccagtgagacctgacagtcttcggtaa 2248

                                                                  
Query: 562  tcctcacgtccatgcatctgtccggcagcctctgtgtaatcataagcattggaa 615
            |||||||||||||| |||||  | || ||||| || ||||||||||||||||||
Sbjct: 2247 tcctcacgtccatggatctgctcagcggcctcggtataatcataagcattggaa 2194
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>gb|AY105228.1| Zea mays PCO137689 mRNA sequence
          Length = 1015

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 81/92 (88%)
 Strand = Plus / Minus

                                                                       
Query: 426 tcttgcaccagatatctggcggatctctgctagattgacaccaccagctccaacaacaga 485
           |||||||||||| | ||| |||||||||||||||||||| |||||||| || || | |||
Sbjct: 620 tcttgcaccagaaacctgacggatctctgctagattgaccccaccagcaccgacgataga 561

                                           
Query: 486 ttccaaagaactatttggaatcctcagttcaa 517
             |||||||||||||||||||||| |||||||
Sbjct: 560 ccccaaagaactatttggaatccttagttcaa 529



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 46/52 (88%)
 Strand = Plus / Minus

                                                               
Query: 559 taatcctcacgtccatgcatctgtccggcagcctctgtgtaatcataagcat 610
           ||||||||||||||||| || ||||| |||||||| || || ||||||||||
Sbjct: 490 taatcctcacgtccatgaatttgtccagcagcctcggtatagtcataagcat 439
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>gb|AC068950.11| Oryza sativa chromosome 10 BAC OSJNBa0041P03 genomic sequence, complete
             sequence
          Length = 139614

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Plus

                                                                         
Query: 445   cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
             |||||||| |||||||||||||||||||||||||  |||||||||| | |||||||||||
Sbjct: 47314 cggatctcagctagattgacaccaccagctccaatgacagattccagataactatttgga 47373

                 
Query: 505   atcc 508
             ||||
Sbjct: 47374 atcc 47377



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                       
Query: 322   atgaagccttgcagaaggctctgtgc 347
             ||||||||||||||||||||||||||
Sbjct: 47093 atgaagccttgcagaaggctctgtgc 47118
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                            
Query: 445      cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
                |||||||| |||||||||||||||||||||||||  |||||||||| | |||||||||||
Sbjct: 18303456 cggatctcagctagattgacaccaccagctccaatgacagattccagataactatttgga 18303397

                    
Query: 505      atcc 508
                ||||
Sbjct: 18303396 atcc 18303393



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                            
Query: 322      atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
                ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 18442660 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 18442601

                                                                            
Query: 382      atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
                |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 18442600 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 18442541

                   
Query: 442      tgg 444
                |||
Sbjct: 18442540 tgg 18442538



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 445      cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
                |||||||| |||||||||||||||||| | ||||  ||||| ||||   |||||||||||
Sbjct: 18442439 cggatctcagctagattgacaccaccaacaccaatgacagactccagttaactatttgga 18442380

                    
Query: 505      atcc 508
                ||||
Sbjct: 18442379 atcc 18442376



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 322      atgaagccttgcagaaggctctgtgc 347
                ||||||||||||||||||||||||||
Sbjct: 18303677 atgaagccttgcagaaggctctgtgc 18303652



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 445      cggatctctgctagattgacaccacca 471
                |||||||| ||||||||||||||||||
Sbjct: 18203046 cggatctcagctagattgacaccacca 18203072
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 59/64 (92%)
 Strand = Plus / Minus

                                                                            
Query: 445      cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
                |||||||| |||||||||||||||||||||||||  |||||||||| | |||||||||||
Sbjct: 18313109 cggatctcagctagattgacaccaccagctccaatgacagattccagataactatttgga 18313050

                    
Query: 505      atcc 508
                ||||
Sbjct: 18313049 atcc 18313046



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                            
Query: 322      atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
                ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 18452713 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 18452654

                                                                            
Query: 382      atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
                |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 18452653 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 18452594

                   
Query: 442      tgg 444
                |||
Sbjct: 18452593 tgg 18452591



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Minus

                                                                            
Query: 445      cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
                |||||||| |||||||||||||||||| | ||||  ||||| ||||   |||||||||||
Sbjct: 18452492 cggatctcagctagattgacaccaccaacaccaatgacagactccagttaactatttgga 18452433

                    
Query: 505      atcc 508
                ||||
Sbjct: 18452432 atcc 18452429



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 26/26 (100%)
 Strand = Plus / Minus

                                          
Query: 322      atgaagccttgcagaaggctctgtgc 347
                ||||||||||||||||||||||||||
Sbjct: 18313330 atgaagccttgcagaaggctctgtgc 18313305



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                           
Query: 445      cggatctctgctagattgacaccacca 471
                |||||||| ||||||||||||||||||
Sbjct: 18212299 cggatctcagctagattgacaccacca 18212325
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>dbj|AK101909.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033071F06, full
            insert sequence
          Length = 3070

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 111/135 (82%)
 Strand = Plus / Minus

                                                                        
Query: 481  acagattccaaagaactatttggaatcctcagttcaacagagctacttgaataccctgta 540
            ||||| |||| | ||||||||||||||| || ||| ||||||| || || |||||| || 
Sbjct: 2943 acagactccagataactatttggaatccgcaattcgacagagccacctggatacccagtg 2884

                                                                        
Query: 541  acatctgccgctctttgataatcctcacgtccatgcatctgtccggcagcctctgtgtaa 600
            | | ||| |  |||| | ||||||||||||||||| |||||  | |||||||| || |||
Sbjct: 2883 agacctgacagtcttcggtaatcctcacgtccatggatctgctccgcagcctcagtataa 2824

                           
Query: 601  tcataagcattggaa 615
            |||||||||||||||
Sbjct: 2823 tcataagcattggaa 2809



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 445  cggatctctgctagattgacaccacca 471
            |||||||| ||||||||||||||||||
Sbjct: 2989 cggatctcagctagattgacaccacca 2963
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>ref|NM_197176.1| Oryza sativa (japonica cultivar-group) putative membrane-associated
            protein (OSJNBa0017E08.17), mRNA
          Length = 2859

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 51/57 (89%)
 Strand = Plus / Minus

                                                                     
Query: 559  taatcctcacgtccatgcatctgtccggcagcctctgtgtaatcataagcattggaa 615
            ||||||||||||||||| |||||  | |||||||| || ||||||||||||||||||
Sbjct: 2588 taatcctcacgtccatggatctgctcagcagcctcagtataatcataagcattggaa 2532



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 94/116 (81%)
 Strand = Plus / Minus

                                                                        
Query: 322  atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
            ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 2798 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 2739

                                                                    
Query: 382  atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccaga 437
            |  ||||| || |||||||||||| |||||||  | ||||||| ||| ||||||||
Sbjct: 2738 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccaga 2683
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>gb|AC068923.12| Oryza sativa chromosome 10 BAC OSJNBa0017E08 genomic sequence, complete
             sequence
          Length = 136120

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Plus

                                                                         
Query: 322   atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
             ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 64033 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 64092

                                                                         
Query: 382   atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
             |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 64093 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 64152

                
Query: 442   tgg 444
             |||
Sbjct: 64153 tgg 64155



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 55/64 (85%)
 Strand = Plus / Plus

                                                                         
Query: 445   cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
             |||||||| |||||||||||||||||| | ||||  ||||| ||||   |||||||||||
Sbjct: 64254 cggatctcagctagattgacaccaccaacaccaatgacagactccagttaactatttgga 64313

                 
Query: 505   atcc 508
             ||||
Sbjct: 64314 atcc 64317
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>dbj|AB110443.1| Oryza sativa (indica cultivar-group) Rf-1 gene for fertility restorer,
             PPR794, PPR683, PPR762 genes for hypothetical protein,
             complete cds
          Length = 76363

 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 100/123 (81%)
 Strand = Plus / Minus

                                                                         
Query: 322   atgaagccttgcagaaggctctgtgccactcgaacttggtgtgccataccttggatctcc 381
             ||||||||||||||||||||||||||  ||   ||||| |  |  || || |||||||||
Sbjct: 51399 atgaagccttgcagaaggctctgtgcggctttcacttgatccggaatgccctggatctcc 51340

                                                                         
Query: 382   atgatggattccgaagaaccaggacgggcttcaagtaacttcattcttgcaccagatatc 441
             |  ||||| || |||||||||||| |||||||  | ||||||| ||| |||||||| |||
Sbjct: 51339 acaatggactcggaagaaccaggatgggcttcgtgcaacttcactctcgcaccagagatc 51280

                
Query: 442   tgg 444
             |||
Sbjct: 51279 tgg 51277



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 67/79 (84%)
 Strand = Plus / Minus

                                                                         
Query: 445   cggatctctgctagattgacaccaccagctccaacaacagattccaaagaactatttgga 504
             |||||||| |||||||||||||||||| | ||||  ||||| ||||   |||||||||||
Sbjct: 51178 cggatctcagctagattgacaccaccaacaccaatgacagactccagttaactatttgga 51119

                                
Query: 505   atcctcagttcaacagagc 523
             |||| || ||| |||||||
Sbjct: 51118 atccacaattcgacagagc 51100
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>dbj|AK100638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110F04, full
            insert sequence
          Length = 3289

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 82/101 (81%)
 Strand = Plus / Minus

                                                                        
Query: 481  acagattccaaagaactatttggaatcctcagttcaacagagctacttgaataccctgta 540
            ||||| |||| | ||||||||||||||| || ||| ||||||| || || |||||| || 
Sbjct: 3087 acagactccagataactatttggaatccgcaattcgacagagccacctggatacccagtg 3028

                                                     
Query: 541  acatctgccgctctttgataatcctcacgtccatgcatctg 581
            | | ||| |  |||| | ||||||||||||||||| |||||
Sbjct: 3027 agacctgacagtcttcggtaatcctcacgtccatggatctg 2987



 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                       
Query: 445  cggatctctgctagattgacaccacca 471
            |||||||| ||||||||||||||||||
Sbjct: 3133 cggatctcagctagattgacaccacca 3107
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>gb|AC023240.9| Oryza sativa chromosome 10 BAC OSJNBa0051D19 genomic sequence, complete
             sequence
          Length = 131984

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                        
Query: 445   cggatctctgctagattgacaccacca 471
             |||||||| ||||||||||||||||||
Sbjct: 10082 cggatctcagctagattgacaccacca 10056
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>emb|CT573098.3| RP43-076G03, complete sequence
          Length = 175456

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                        
Query: 112    ttggaaatgaccaaagcccagattat 137
              ||||||||||| ||||||||||||||
Sbjct: 153912 ttggaaatgactaaagcccagattat 153887
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>emb|CT573270.1| RP43-049F09, complete sequence
          Length = 165723

 Score = 44.1 bits (22), Expect = 0.54
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 112   ttggaaatgaccaaagcccagattat 137
             ||||||||||| ||||||||||||||
Sbjct: 65874 ttggaaatgactaaagcccagattat 65849
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>gb|AC120003.6| Mus musculus chromosome 8, clone RP24-148H22, complete sequence
          Length = 210466

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 64    aaagggggtaaaaaagacaag 84
             |||||||||||||||||||||
Sbjct: 21247 aaagggggtaaaaaagacaag 21267
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>gb|AC115484.2| Drosophila melanogaster clone BACR06K01, complete sequence
          Length = 168504

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 136   atttttgtcaacaaacatggtctaa 160
             |||||||||||| ||||||||||||
Sbjct: 13623 atttttgtcaaccaacatggtctaa 13647
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>gb|AC124918.5| Rattus norvegicus 4 BAC CH230-4H1 (Children's Hospital Oakland Research
              Institute) complete sequence
          Length = 228052

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 219    ggtgttatgtagttcttcccc 239
              |||||||||||||||||||||
Sbjct: 173013 ggtgttatgtagttcttcccc 172993
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>gb|AC108104.2| Homo sapiens chromosome 5 clone RP11-198P15, complete sequence
          Length = 96678

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 235   tccccagaagcctctagggtt 255
             |||||||||||||||||||||
Sbjct: 13488 tccccagaagcctctagggtt 13508
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>ref|NM_080191.2| Drosophila melanogaster weckle CG4148-RA (wek), mRNA
          Length = 1659

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 136  atttttgtcaacaaacatggtctaa 160
            |||||||||||| ||||||||||||
Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
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>gb|AY051673.1| Drosophila melanogaster LD22579 full length cDNA
          Length = 1677

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 136  atttttgtcaacaaacatggtctaa 160
            |||||||||||| ||||||||||||
Sbjct: 1520 atttttgtcaaccaacatggtctaa 1496
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>gb|AE003648.2| Drosophila melanogaster chromosome 2L, section 57 of 83 of the complete
              sequence
          Length = 284900

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                       
Query: 136    atttttgtcaacaaacatggtctaa 160
              |||||||||||| ||||||||||||
Sbjct: 239157 atttttgtcaaccaacatggtctaa 239181
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>emb|BX005095.6| Zebrafish DNA sequence from clone CH211-189B21, complete sequence
          Length = 138343

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 511   agttcaacagagctacttgaa 531
             |||||||||||||||||||||
Sbjct: 11593 agttcaacagagctacttgaa 11573
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>ref|XM_714593.1| Candida albicans SC5314 hypothetical protein (CaO19_9663), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 acaccaccagctccaacaac 482
           ||||||||||||||||||||
Sbjct: 248 acaccaccagctccaacaac 229
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>ref|XM_714468.1| Candida albicans SC5314 hypothetical protein (CaO19_2115), mRNA
          Length = 1305

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 acaccaccagctccaacaac 482
           ||||||||||||||||||||
Sbjct: 248 acaccaccagctccaacaac 229
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>ref|NM_194339.1| Mus musculus BMS1-like, ribosome assembly protein (yeast) (Bms1l),
            mRNA
          Length = 4305

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3678 aagccttgcagaaggctctg 3697
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>gb|BC030906.1| Mus musculus BMS1-like, ribosome assembly protein (yeast), mRNA (cDNA
            clone IMAGE:4503618), partial cds
          Length = 3101

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 2478 aagccttgcagaaggctctg 2497
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>gb|AC122847.4| Mus musculus BAC clone RP23-163F2 from 6, complete sequence
          Length = 193343

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 331   tgcagaaggctctgtgccac 350
             ||||||||||||||||||||
Sbjct: 78845 tgcagaaggctctgtgccac 78826
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>gb|AC145966.2| Pan troglodytes BAC clone RP43-17M9 from 7, complete sequence
          Length = 197140

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 523  ctacttgaataccctgtaac 542
            ||||||||||||||||||||
Sbjct: 4095 ctacttgaataccctgtaac 4114
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>gb|AC073341.10| Homo sapiens BAC clone RP11-549I23 from 7, complete sequence
          Length = 185574

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 523   ctacttgaataccctgtaac 542
             ||||||||||||||||||||
Sbjct: 77044 ctacttgaataccctgtaac 77025
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>gb|AY346378.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1)
           gene, complete cds
          Length = 907

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 gttcttccccagaagcctct 249
           ||||||||||||||||||||
Sbjct: 175 gttcttccccagaagcctct 194
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>gb|DQ452367.1| Liriomyza huidobrensis clone 3 heat shock protein Hsp40 (Hsp40) mRNA,
            partial cds
          Length = 1081

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   ggtaaaaaagacaaggaaac 89
            ||||||||||||||||||||
Sbjct: 992  ggtaaaaaagacaaggaaac 1011
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>gb|DQ452366.1| Liriomyza huidobrensis clone 2 heat shock protein Hsp40 (Hsp40) mRNA,
            partial cds
          Length = 1325

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 70   ggtaaaaaagacaaggaaac 89
            ||||||||||||||||||||
Sbjct: 993  ggtaaaaaagacaaggaaac 1012
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>emb|AL607044.24| Human DNA sequence from clone RP13-392N17 on chromosome 10, complete
             sequence
          Length = 125086

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 468   accagctccaacaacagattccaa 491
             ||||||||||||| ||||||||||
Sbjct: 58189 accagctccaacatcagattccaa 58212
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>emb|AL356605.20| Human DNA sequence from clone RP11-414G18 on chromosome 6 Contains part
             of the TCBA1 gene for T-cell lymphoma breakpoint
             associated target 1, complete sequence
          Length = 169493

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 133   attatttttgtcaacaaaca 152
             ||||||||||||||||||||
Sbjct: 68459 attatttttgtcaacaaaca 68478
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>gb|AF233295.1| Penaeus monodon crustacean hyperglycemic hormone 1 precursor (CHH1)
           mRNA, complete cds
          Length = 593

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 gttcttccccagaagcctct 249
           ||||||||||||||||||||
Sbjct: 175 gttcttccccagaagcctct 194
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>emb|BX649410.18| Mouse DNA sequence from clone RP23-168C6 on chromosome 4 Contains a
             ribosomal protein S6 (Rps6) pseudogene and a novel gene,
             complete sequence
          Length = 231582

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 258   gttccacactgggtaaaggt 277
             ||||||||||||||||||||
Sbjct: 81134 gttccacactgggtaaaggt 81153
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>emb|AL928624.4| Mouse DNA sequence from clone RP23-454E10 on chromosome 4, complete
            sequence
          Length = 24246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 331  tgcagaaggctctgtgccac 350
            ||||||||||||||||||||
Sbjct: 2237 tgcagaaggctctgtgccac 2256
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>gb|BC057054.1| Mus musculus BMS1-like, ribosome assembly protein (yeast), mRNA (cDNA
            clone MGC:67338 IMAGE:6827225), complete cds
          Length = 4305

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3678 aagccttgcagaaggctctg 3697
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>dbj|AK133013.1| Mus musculus adult male testis cDNA, RIKEN full-length enriched
            library, clone:4930553L04 product:BMS1-like, ribosome
            assembly protein (yeast), full insert sequence
          Length = 3783

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3628 aagccttgcagaaggctctg 3647
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>gb|AC093886.2| Homo sapiens BAC clone RP11-666L21 from 4, complete sequence
          Length = 174332

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 72     taaaaaagacaaggaaacaa 91
              ||||||||||||||||||||
Sbjct: 148456 taaaaaagacaaggaaacaa 148437
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>dbj|AK162178.1| Mus musculus in vitro fertilized eggs cDNA, RIKEN full-length
            enriched library, clone:7420448D03 product:BMS1-like,
            ribosome assembly protein (yeast), full insert sequence
          Length = 4288

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3738 aagccttgcagaaggctctg 3757
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>ref|NM_076074.3| Caenorhabditis elegans T14G11.3 (T14G11.3) mRNA, complete cds
          Length = 2362

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 463 acaccaccagctccaacaac 482
           ||||||||||||||||||||
Sbjct: 197 acaccaccagctccaacaac 178
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>gb|AC109506.21| Mus musculus chromosome 7, clone RP23-344G21, complete sequence
          Length = 227676

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 569   gtccatgcatctgtccggcagcct 592
             ||||||||||||||||| ||||||
Sbjct: 53221 gtccatgcatctgtccgtcagcct 53198
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>gb|AC084797.5| Homo sapiens chromosome 16 clone RP11-62O3, complete sequence
          Length = 163855

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 112    ttggaaatgaccaaagccca 131
              ||||||||||||||||||||
Sbjct: 103554 ttggaaatgaccaaagccca 103573
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>ref|XM_342746.2| PREDICTED: Rattus norvegicus BMS1-like, ribosome assembly protein
            (yeast) (predicted) (Bms1l_predicted), mRNA
          Length = 4206

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3596 aagccttgcagaaggctctg 3615
to top
>gb|AF216203.1|AF216203 Limulus polyphemus mitochondrial genome, complete sequence
          Length = 14985

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 411  ttcaagtaacttcattcttg 430
            ||||||||||||||||||||
Sbjct: 7889 ttcaagtaacttcattcttg 7908
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>emb|AL929213.5| Zebrafish DNA sequence from clone CH211-144A19, complete sequence
          Length = 169897

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 135   tatttttgtcaacaaacatg 154
             ||||||||||||||||||||
Sbjct: 78890 tatttttgtcaacaaacatg 78909
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>dbj|AK129082.1| Mus musculus mRNA for mKIAA0187 protein
          Length = 4246

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3638 aagccttgcagaaggctctg 3657
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>gb|U41024.1| Caenorhabditis elegans cosmid T14G11, complete sequence
          Length = 11200

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 463  acaccaccagctccaacaac 482
            ||||||||||||||||||||
Sbjct: 8457 acaccaccagctccaacaac 8476
to top
>gb|BC091626.1| Xenopus laevis cDNA clone IMAGE:7198352, partial cds
          Length = 3802

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 325  aagccttgcagaaggctctg 344
            ||||||||||||||||||||
Sbjct: 3632 aagccttgcagaaggctctg 3651
to top
>emb|BX469931.8| Zebrafish DNA sequence from clone DKEY-108D22 in linkage group 4,
             complete sequence
          Length = 204487

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 481   acagattccaaagaactatt 500
             ||||||||||||||||||||
Sbjct: 43156 acagattccaaagaactatt 43137
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>emb|AL391703.9| Human DNA sequence from clone RP11-422P8 on chromosome 1 Contains the
             5' end of the GNG12 gene for guanine nucleotide binding
             protein (G protein), gamma 12, the 5' end of a novel gene
             (FLJ38762, FLJ42034) and a CpG island, complete sequence
          Length = 191741

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 81    caaggaaacaagcacgtttagcag 104
             ||||||||||||||||||| ||||
Sbjct: 98968 caaggaaacaagcacgttttgcag 98945
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>dbj|AP000590.7| Homo sapiens genomic DNA, chromosome 11 clone:CMB9-52H4, complete
             sequence
          Length = 114288

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 323   tgaagccttgcagaaggctc 342
             ||||||||||||||||||||
Sbjct: 79584 tgaagccttgcagaaggctc 79603
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>gb|BC092659.1| Rattus norvegicus BMS1-like, ribosome assembly protein (yeast),
           mRNA (cDNA clone IMAGE:7321247), partial cds
          Length = 1478

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 325 aagccttgcagaaggctctg 344
           ||||||||||||||||||||
Sbjct: 841 aagccttgcagaaggctctg 860
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>gb|AC140192.3| Mus musculus BAC clone RP24-377O11 from 6, complete sequence
          Length = 160574

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 325   aagccttgcagaaggctctg 344
             ||||||||||||||||||||
Sbjct: 31771 aagccttgcagaaggctctg 31752
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>gb|AC140466.3| Mus musculus BAC clone RP24-392F9 from 6, complete sequence
          Length = 148392

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 325    aagccttgcagaaggctctg 344
              ||||||||||||||||||||
Sbjct: 107554 aagccttgcagaaggctctg 107535
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>gb|AE017262.2| Listeria monocytogenes str. 4b F2365, complete genome
          Length = 2905187

 Score = 40.1 bits (20), Expect = 8.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 226     tgtagttcttccccagaagc 245
               ||||||||||||||||||||
Sbjct: 1361884 tgtagttcttccccagaagc 1361865


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,049,925
Number of Sequences: 3902068
Number of extensions: 5049925
Number of successful extensions: 122262
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 122048
Number of HSP's gapped (non-prelim): 212
length of query: 615
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 592
effective length of database: 17,143,297,704
effective search space: 10148832240768
effective search space used: 10148832240768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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