ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ref|XM_466018.1| Oryza sativa (japonica cultivar-group), mRNA 186 5e-44
2dbj|AK121782.1| Oryza sativa (japonica cultivar-group) cDNA clon... 186 5e-44
3gb|AY106720.1| Zea mays PCO113091 mRNA sequence 170 3e-39
4dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
5dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
6dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
7dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic D... 113 6e-22
8gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 113 6e-22
9emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa... 113 6e-22
10emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa... 113 6e-22
11ref|NM_101907.2| Arabidopsis thaliana transferase, transferring ... 46 0.11
12gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana... 46 0.11
13gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana... 46 0.11
14gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complet... 44 0.42
15gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, co... 42 1.7
16gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete... 42 1.7
17gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome 40 6.6
18gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, compl... 40 6.6
19emb|AL114785.1|CNS01BWP Botrytis cinerea strain T4 cDNA library 40 6.6
20emb|AL114137.1|CNS01BEP Botrytis cinerea strain T4 cDNA library 40 6.6
21gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete... 40 6.6
22dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP... 40 6.6

>ref|XM_466018.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3627

 Score =  186 bits (94), Expect = 5e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                        
Query: 190  ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
            |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 3351 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 3292

                                                                        
Query: 250  gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatcctc 309
            || || | |||||| |||||||| ||||| || || || ||||||||||||||||||| |
Sbjct: 3291 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatccgc 3232

                                                                        
Query: 310  aagaggaacacgacgcactcgtcaaattgcttctcgatccgatccaactccatctcgcat 369
            | ||| || || |||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct: 3231 aggagaaatacaacgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcat 3172

                  
Query: 370  cttgcc 375
            ||||||
Sbjct: 3171 cttgcc 3166



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
            ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 3120 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 3061

                    
Query: 482  aacttatc 489
            ||||||||
Sbjct: 3060 aacttatc 3053



to top

>dbj|AK121782.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033093P19, full
            insert sequence
          Length = 3628

 Score =  186 bits (94), Expect = 5e-44
 Identities = 163/186 (87%)
 Strand = Plus / Minus

                                                                        
Query: 190  ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
            |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 3352 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 3293

                                                                        
Query: 250  gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatcctc 309
            || || | |||||| |||||||| ||||| || || || ||||||||||||||||||| |
Sbjct: 3292 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatccgc 3233

                                                                        
Query: 310  aagaggaacacgacgcactcgtcaaattgcttctcgatccgatccaactccatctcgcat 369
            | ||| || || |||||||||||||||||||||||||| |||||||  ||||||||||||
Sbjct: 3232 aggagaaatacaacgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcat 3173

                  
Query: 370  cttgcc 375
            ||||||
Sbjct: 3172 cttgcc 3167



 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 58/68 (85%)
 Strand = Plus / Minus

                                                                        
Query: 422  ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
            ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 3121 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 3062

                    
Query: 482  aacttatc 489
            ||||||||
Sbjct: 3061 aacttatc 3054



to top

>gb|AY106720.1| Zea mays PCO113091 mRNA sequence
          Length = 916

 Score =  170 bits (86), Expect = 3e-39
 Identities = 252/306 (82%), Gaps = 1/306 (0%)
 Strand = Plus / Minus

                                                                       
Query: 184 cgggacccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttg 243
           ||||||||||| || |||| |||||| ||  | ||||||||| ||||||||||||| |||
Sbjct: 708 cgggacccaggaatagcagagaagctcccactatcagacatgaaatagtgattgtaattg 649

                                                                       
Query: 244 atcctcgtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagatagg 303
           ||||| || || | ||| || |||||||| || || ||||| || |||||||||||||||
Sbjct: 648 atccttgtaactagatcggcaagatgggggaaatgacccacattgagcttgaaagatagg 589

                                                                       
Query: 304 atcctcaagaggaacacgacgcactcgtcaaattgcttctcgatccgatccaactccatc 363
           ||||||| ||| || | ||| ||||| |||||||||||||| ||||| || |  ||||||
Sbjct: 588 atcctcaggagaaatatgacacactcatcaaattgcttctcaatccggtcgatttccatc 529

                                                                       
Query: 364 tcgcatcttgccctaacagatgcccgcggtccctccggtgccgagagtttgctccacatt 423
           ||||||| || ||| |||| ||   || ||||| ||||| | ||||||||| || |||||
Sbjct: 528 tcgcatcgtgtcctcacagctg-aagccgtcccaccggtactgagagtttgttctacatt 470

                                                                       
Query: 424 gtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccacaa 483
           ||||||||| |  |||||||| || |||||||| ||||||||||| || || ||||||| 
Sbjct: 469 gtggaagtccagtgccaatccaagaatagtcttaactcgactggcaatgagggcccacag 410

                 
Query: 484 cttatc 489
           ||||||
Sbjct: 409 cttatc 404



to top

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                            
Query: 190      ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
                |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 25644945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 25644886

                                                                         
Query: 250      gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
                || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 25644885 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 25644829



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 322      acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
                |||||||||||||||||||||||||| |||||||  |||||||| |||||||||
Sbjct: 25644706 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 25644653



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                            
Query: 422      ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
                ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 25644607 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 25644548



to top

>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                            
Query: 190      ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
                |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 19110696 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 19110755

                                                                         
Query: 250      gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
                || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 19110756 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 19110812



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                      
Query: 322      acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
                |||||||||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 19110928 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 19110981



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                            
Query: 422      ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
                ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 19111027 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 19111086



to top

>dbj|AP004772.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
            clone:P0415B12
          Length = 157419

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                        
Query: 190  ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
            |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 8945 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 9004

                                                                     
Query: 250  gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
            || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 9005 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 9061



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                  
Query: 322  acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
            |||||||||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 9177 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 9230



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                        
Query: 422  ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
            ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 9276 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 9335



to top

>dbj|AP005749.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0047A17
          Length = 149142

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                          
Query: 190    ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
              |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 116217 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 116276

                                                                       
Query: 250    gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
              || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 116277 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 116333



 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 51/54 (94%)
 Strand = Plus / Plus

                                                                    
Query: 322    acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
              |||||||||||||||||||||||||| |||||||  ||||||||||||||||||
Sbjct: 116449 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcgcatcttgcc 116502



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                          
Query: 422    ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
              ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 116548 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 116607



to top

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                            
Query: 190      ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
                |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 25573121 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 25573062

                                                                         
Query: 250      gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
                || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 25573061 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 25573005



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 322      acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
                |||||||||||||||||||||||||| |||||||  |||||||| |||||||||
Sbjct: 25572882 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 25572829



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                            
Query: 422      ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
                ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 25572783 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 25572724



to top

>emb|AL731881.4|CNS08C8L Oryza sativa chromosome 12, . BAC OSJNBa0002L05 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 167131

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Minus

                                                                         
Query: 190   ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
             |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 12183 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 12124

                                                                      
Query: 250   gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
             || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 12123 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 12067



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 322   acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
             |||||||||||||||||||||||||| |||||||  |||||||| |||||||||
Sbjct: 11944 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 11891



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Minus

                                                                         
Query: 422   ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
             ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 11845 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 11786



to top

>emb|AL732537.4|CNS08C9C Oryza sativa chromosome 12, . BAC OSJNBa0036L12 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 127003

 Score =  113 bits (57), Expect = 6e-22
 Identities = 102/117 (87%)
 Strand = Plus / Plus

                                                                         
Query: 190   ccagggatcgcagtgaagcttccggtgtcagacatgtaatagtgattgtagttgatcctc 249
             |||||||| |||| |||||||||| ||||||||||||||||||| ||||| ||||| |||
Sbjct: 28773 ccagggatggcagagaagcttccgctgtcagacatgtaatagtggttgtaattgattctc 28832

                                                                      
Query: 250   gtgaccaaatccgcgagatggggaaagtggcccacgttcagcttgaaagataggatc 306
             || || | |||||| |||||||| ||||| || || || ||||||||||||||||||
Sbjct: 28833 gtaacgagatccgccagatgggggaagtgaccaacattgagcttgaaagataggatc 28889



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                   
Query: 322   acgcactcgtcaaattgcttctcgatccgatccaactccatctcgcatcttgcc 375
             |||||||||||||||||||||||||| |||||||  |||||||| |||||||||
Sbjct: 29012 acgcactcgtcaaattgcttctcgatgcgatccacttccatctcacatcttgcc 29065



 Score = 40.1 bits (20), Expect = 6.6
 Identities = 50/60 (83%)
 Strand = Plus / Plus

                                                                         
Query: 422   ttgtggaagtctaacgccaatcccagtatagtcttgactcgactggcgatcagagcccac 481
             ||||||||||| |  |||||||| || || ||||| ||||||||||| || || ||||||
Sbjct: 29111 ttgtggaagtcaagtgccaatccaagaatggtcttaactcgactggctatgagggcccac 29170



to top

>ref|NM_101907.2| Arabidopsis thaliana transferase, transferring glycosyl groups /
            tubulin binding AT1G20570 mRNA, complete cds
          Length = 2931

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                        
Query: 206  agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 265
            ||||||| |||||||||||||| |  | |||||| ||||| || || |||||||| || |
Sbjct: 2908 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 2849

                               
Query: 266  gatggggaaagtggcccac 284
            |||| || ||||| |||||
Sbjct: 2848 gatgagggaagtgtcccac 2830



to top

>gb|AC069251.5|AC069251 Genomic sequence for Arabidopsis thaliana BAC F2D10 from chromosome I,
             complete sequence
          Length = 143879

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Plus

                                                                         
Query: 206   agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 265
             ||||||| |||||||||||||| |  | |||||| ||||| || || |||||||| || |
Sbjct: 12499 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 12558

                                
Query: 266   gatggggaaagtggcccac 284
             |||| || ||||| |||||
Sbjct: 12559 gatgagggaagtgtcccac 12577



to top

>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I,
             complete sequence
          Length = 99231

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 65/79 (82%)
 Strand = Plus / Minus

                                                                         
Query: 206   agcttccggtgtcagacatgtaatagtgattgtagttgatcctcgtgaccaaatccgcga 265
             ||||||| |||||||||||||| |  | |||||| ||||| || || |||||||| || |
Sbjct: 42616 agcttccagtgtcagacatgtagtgataattgtaattgattctggtcaccaaatcagcca 42557

                                
Query: 266   gatggggaaagtggcccac 284
             |||| || ||||| |||||
Sbjct: 42556 gatgagggaagtgtcccac 42538



to top

>gb|AC013264.4| Homo sapiens BAC clone RP11-184N4 from 2, complete sequence
          Length = 149445

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 131   ccacaaatggagctgaaaagca 152
             ||||||||||||||||||||||
Sbjct: 53521 ccacaaatggagctgaaaagca 53500



to top

>gb|AC123726.11| Mus musculus chromosome 3, clone RP23-436F15, complete sequence
          Length = 224297

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 63     aaacccaaggaattcaggaac 83
              |||||||||||||||||||||
Sbjct: 111724 aaacccaaggaattcaggaac 111744



to top

>gb|AC011291.8| Homo sapiens BAC clone RP11-67G7 from 2, complete sequence
          Length = 150214

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 409   agtttgctccacattgtggaagtct 433
             |||||||||||| ||||||||||||
Sbjct: 56861 agtttgctccactttgtggaagtct 56837



to top

>gb|CP000283.1| Rhodopseudomonas palustris BisB5, complete genome
          Length = 4892717

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 240     gttgatcctcgtgaccaaatccgc 263
               |||||||||||||| |||||||||
Sbjct: 2090024 gttgatcctcgtgatcaaatccgc 2090047



to top

>gb|AC105937.2| Homo sapiens chromosome 3 clone RP11-45J19, complete sequence
          Length = 171621

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 36     acatcnctcagnaattgtgtggtact 61
              ||||| ||||| ||||||||||||||
Sbjct: 168498 acatccctcagtaattgtgtggtact 168523



to top

>emb|AL114785.1|CNS01BWP Botrytis cinerea strain T4 cDNA library
          Length = 840

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 ggatcctcaagaggaacacg 321
           ||||||||||||||||||||
Sbjct: 223 ggatcctcaagaggaacacg 204



to top

>emb|AL114137.1|CNS01BEP Botrytis cinerea strain T4 cDNA library
          Length = 660

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 302 ggatcctcaagaggaacacg 321
           ||||||||||||||||||||
Sbjct: 203 ggatcctcaagaggaacacg 184



to top

>gb|AC009948.3| Homo sapiens BAC clone RP11-65L3 from 2, complete sequence
          Length = 172828

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                       
Query: 36    acatcnctcagnaattgtgtggtact 61
             ||||| ||||| ||||||||||||||
Sbjct: 88504 acatccctcagtaattgtgtggtact 88529



to top

>dbj|AP001357.5| Homo sapiens genomic DNA, chromosome 18 clone:RP11-807E13, complete
             sequence
          Length = 182382

 Score = 40.1 bits (20), Expect = 6.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 165   tcaaggctgctgccgagcac 184
             ||||||||||||||||||||
Sbjct: 52440 tcaaggctgctgccgagcac 52421


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,838,208
Number of Sequences: 3902068
Number of extensions: 2838208
Number of successful extensions: 43897
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 43807
Number of HSP's gapped (non-prelim): 89
length of query: 490
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 468
effective length of database: 17,147,199,772
effective search space: 8024889493296
effective search space used: 8024889493296
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top