Clone Name | rbah62c20 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196492.1| Oryza sativa (japonica cultivar-group) putative acylaminoacyl-peptidase like protein (OSJNBa0032I20.5), mRNA Length = 2406 Score = 167 bits (84), Expect = 4e-38 Identities = 197/234 (84%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 326 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 2375 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 2316 Query: 327 tcgatttcgtgcgtgtcctctgggaacatgatggttttgatctcgactcctctttctctc 386 | |||||| || |||| ||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 2315 ttgatttcatgtatgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctc 2256 Query: 387 agagcccttgcgtactgtaggccattggaagcgggcacccgaagatccgctcccccgaga 446 ||||| |||||||||||||||||||| ||| ||| || |||||||| ||||| || ||| Sbjct: 2255 agagctcttgcgtactgtaggccattagaaatggggactcgaagatctgctcctccaaga 2196 Query: 447 agcataagcaanaggcgctttcacttttgaaatgtgggcaattggngatttctg 500 ||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| Sbjct: 2195 agcataagc-aggggcgctttcaccttcgaaatatgggcaattggtgatttctg 2143
>dbj|AK066318.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013067G13, full insert sequence Length = 2732 Score = 167 bits (84), Expect = 4e-38 Identities = 197/234 (84%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 326 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 2427 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 2368 Query: 327 tcgatttcgtgcgtgtcctctgggaacatgatggttttgatctcgactcctctttctctc 386 | |||||| || |||| ||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 2367 ttgatttcatgtatgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctc 2308 Query: 387 agagcccttgcgtactgtaggccattggaagcgggcacccgaagatccgctcccccgaga 446 ||||| |||||||||||||||||||| ||| ||| || |||||||| ||||| || ||| Sbjct: 2307 agagctcttgcgtactgtaggccattagaaatggggactcgaagatctgctcctccaaga 2248 Query: 447 agcataagcaanaggcgctttcacttttgaaatgtgggcaattggngatttctg 500 ||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| Sbjct: 2247 agcataagc-aggggcgctttcaccttcgaaatatgggcaattggtgatttctg 2195
>dbj|AK061694.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-C07, full insert sequence Length = 1252 Score = 167 bits (84), Expect = 4e-38 Identities = 197/234 (84%), Gaps = 1/234 (0%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 326 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| | ||||| Sbjct: 1054 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccgattgtggtatg 995 Query: 327 tcgatttcgtgcgtgtcctctgggaacatgatggttttgatctcgactcctctttctctc 386 | |||||| || |||| ||||||||||| ||| | |||||||| | |||||||||||| Sbjct: 994 ttgatttcatgtatgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctc 935 Query: 387 agagcccttgcgtactgtaggccattggaagcgggcacccgaagatccgctcccccgaga 446 ||||| |||||||||||||||||||| ||| ||| || |||||||| ||||| || ||| Sbjct: 934 agagctcttgcgtactgtaggccattagaaatggggactcgaagatctgctcctccaaga 875 Query: 447 agcataagcaanaggcgctttcacttttgaaatgtgggcaattggngatttctg 500 ||||||||| | ||||||||||| || ||||| ||||||||||| |||||||| Sbjct: 874 agcataagc-aggggcgctttcaccttcgaaatatgggcaattggtgatttctg 822
>gb|AY110152.1| Zea mays CL9977_1 mRNA sequence Length = 551 Score = 145 bits (73), Expect = 2e-31 Identities = 148/173 (85%) Strand = Plus / Plus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccgaccgcggtata 326 ||||||||| ||||||| || || |||||||||||||| ||||| || |||||||||| | Sbjct: 277 agatgtttcttgaaccataccccaatgttgaggaagctttcgaaatcggaccgcggtaaa 336 Query: 327 tcgatttcgtgcgtgtcctctgggaacatgatggttttgatctcgactcctctttctctc 386 | ||||||||| |||||||||||||||| ||| |||||| ||| ||||||||||| || Sbjct: 337 ttgatttcgtgtatgtcctctgggaacatcatgattttgacatcgcctcctctttctatc 396 Query: 387 agagcccttgcgtactgtaggccattggaagcgggcacccgaagatccgctcc 439 || ||||||||||||||||||||| ||||| ||||| ||||| || ||||| Sbjct: 397 aggctccttgcgtactgtaggccattagaagcaggcactcgaaggtcagctcc 449
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 340 tgtcctctgggaacatgatggttttgatctcgactcctctttctctcagagcccttgcgt 399 |||| ||||||||||| ||| | |||||||| | ||||||||||||||||| ||||||| Sbjct: 14034304 tgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctcagagctcttgcgt 14034245 Query: 400 actg 403 |||| Sbjct: 14034244 actg 14034241 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 316 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 14034531 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 14034482 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Minus Query: 401 ctgtaggccattggaagcgggcacccgaagatccgctcccccgagaagcataagca 456 |||||||||||| ||| ||| || |||||||| ||||| || ||||||||||||| Sbjct: 14033995 ctgtaggccattagaaatggggactcgaagatctgctcctccaagaagcataagca 14033940
>gb|AF229187.1|AF229187 Oryza sativa subsp. japonica BAC clone nbxb0032I20, complete sequence Length = 144651 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 340 tgtcctctgggaacatgatggttttgatctcgactcctctttctctcagagcccttgcgt 399 |||| ||||||||||| ||| | |||||||| | ||||||||||||||||| ||||||| Sbjct: 50433 tgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctcagagctcttgcgt 50374 Query: 400 actg 403 |||| Sbjct: 50373 actg 50370 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 316 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 50660 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 50611 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Minus Query: 401 ctgtaggccattggaagcgggcacccgaagatccgctcccccgagaagcataagca 456 |||||||||||| ||| ||| || |||||||| ||||| || ||||||||||||| Sbjct: 50124 ctgtaggccattagaaatggggactcgaagatctgctcctccaagaagcataagca 50069
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 63.9 bits (32), Expect = 5e-07 Identities = 56/64 (87%) Strand = Plus / Minus Query: 340 tgtcctctgggaacatgatggttttgatctcgactcctctttctctcagagcccttgcgt 399 |||| ||||||||||| ||| | |||||||| | ||||||||||||||||| ||||||| Sbjct: 14042546 tgtcgtctgggaacatcatgatcctgatctcgccgcctctttctctcagagctcttgcgt 14042487 Query: 400 actg 403 |||| Sbjct: 14042486 actg 14042483 Score = 52.0 bits (26), Expect = 0.002 Identities = 44/50 (88%) Strand = Plus / Minus Query: 267 agatgtttcctgaaccagactcccatgttgaggaagctctcgaagtccga 316 ||||| ||| |||||||||| || ||||||||||||||||| || ||||| Sbjct: 14042773 agatgcttcttgaaccagacaccaatgttgaggaagctctcaaaatccga 14042724 Score = 48.1 bits (24), Expect = 0.028 Identities = 48/56 (85%) Strand = Plus / Minus Query: 401 ctgtaggccattggaagcgggcacccgaagatccgctcccccgagaagcataagca 456 |||||||||||| ||| ||| || |||||||| ||||| || ||||||||||||| Sbjct: 14042237 ctgtaggccattagaaatggggactcgaagatctgctcctccaagaagcataagca 14042182
>gb|AF475113.1| Triticum aestivum histone acetyltransferase mRNA, partial cds Length = 339 Score = 56.0 bits (28), Expect = 1e-04 Identities = 43/48 (89%) Strand = Plus / Plus Query: 28 ctactccacaaacagaagccaaactcacattgcccaggctgcgtcaac 75 ||||| |||||| |||| |||| ||||| ||||||||||||||||||| Sbjct: 282 ctacttcacaaatagaatccaatctcaccttgcccaggctgcgtcaac 329
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Minus Query: 118 tacgctcataatttgggagaaa 139 |||||||||||||||||||||| Sbjct: 28673 tacgctcataatttgggagaaa 28652
>gb|AC118695.10| Mus musculus chromosome 19, clone RP24-62C10, complete sequence Length = 261979 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 193 aatcaccaagaagcttcgaagttct 217 |||||||||||||||||| |||||| Sbjct: 138503 aatcaccaagaagcttcggagttct 138527
>gb|AY710429.1| Cryptococcus gattii strain E566 MATa locus, complete sequence Length = 144400 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 361 ttttgatctcgactcctctttctctcag 388 |||||||| |||| |||||||||||||| Sbjct: 105605 ttttgatcgcgacccctctttctctcag 105578
>gb|BT018357.1| Zea mays clone EL01T0404A12.c mRNA sequence Length = 712 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 agcccttgcgtactgtaggccatt 412 ||||||||||||||| |||||||| Sbjct: 345 agcccttgcgtactgcaggccatt 322
>gb|AC123694.11| Mus musculus chromosome 10, clone RP23-326O5, complete sequence Length = 214111 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 123 tcataatttgggagaaatat 142 |||||||||||||||||||| Sbjct: 119643 tcataatttgggagaaatat 119624
>ref|XM_709207.1| Candida albicans SC5314 hypothetical protein (CaO19.91), mRNA Length = 900 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 gttcatttttatcaatctctttacgctc 124 |||| |||||||||||||||||| |||| Sbjct: 253 gttcctttttatcaatctctttatgctc 226
>ref|XM_708931.1| Candida albicans SC5314 hypothetical protein (CaO19.7737), mRNA Length = 900 Score = 40.1 bits (20), Expect = 6.9 Identities = 26/28 (92%) Strand = Plus / Minus Query: 97 gttcatttttatcaatctctttacgctc 124 |||| |||||||||||||||||| |||| Sbjct: 253 gttcctttttatcaatctctttatgctc 226
>emb|AL138721.16| Human DNA sequence from clone RP11-174N3 on chromosome 6 Contains the 3' end of gene KIAA0229 for a novel Ank, SAM (Sterile alpha motif) and Phosphotyrosine interaction (PTB/PID) domain containing protein, the TCP11 gene for t-complex 11 (mouse) and two CpG islands, complete sequence Length = 155539 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 91 gatgctgttcatttttatcaatct 114 |||||||||||||||| ||||||| Sbjct: 45549 gatgctgttcatttttttcaatct 45526
>emb|AL133321.11| Human DNA sequence from clone RP13-17E1 on chromosome X Contains part of the PCDH11X gene for protocadherin 11 X-linked, complete sequence Length = 170805 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 125 ataatttgggagaaatatat 144 |||||||||||||||||||| Sbjct: 10084 ataatttgggagaaatatat 10065
>gb|AC009630.14| Homo sapiens chromosome 8, clone RP11-360L9, complete sequence Length = 219622 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 186 aagacaaaatcaccaagaag 205 |||||||||||||||||||| Sbjct: 85496 aagacaaaatcaccaagaag 85477
>gb|AF386920.1| Bovine rotavirus strain B8 outer capsid protein VP7 gene, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctactactccacaaacagaa 44 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AF386916.1| Bovine rotavirus strain Hg2 outer capsid protein VP7 gene, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctactactccacaaacagaa 44 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AC097533.2| Homo sapiens BAC clone RP11-770K15 from 4, complete sequence Length = 174696 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctcctctttctctcagagcc 392 |||||||||||||||||||| Sbjct: 114528 ctcctctttctctcagagcc 114509
>emb|BX005328.9| Zebrafish DNA sequence from clone DKEY-63D15 in linkage group 8, complete sequence Length = 272840 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 376 ctctttctctcagagccctt 395 |||||||||||||||||||| Sbjct: 180267 ctctttctctcagagccctt 180248
>gb|AC079447.4| Homo sapiens BAC clone RP11-111H13 from 2, complete sequence Length = 175567 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 180 cacagaaagacaaaatcacc 199 |||||||||||||||||||| Sbjct: 108611 cacagaaagacaaaatcacc 108630
>emb|CR749772.5| Zebrafish DNA sequence from clone DKEY-260P18 in linkage group 19, complete sequence Length = 91686 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 96 tgttcatttttatcaatctcttta 119 ||||||||||||||||| |||||| Sbjct: 91182 tgttcatttttatcaatttcttta 91205
>emb|BX545847.9| Zebrafish DNA sequence from clone RP71-14M1 in linkage group 19, complete sequence Length = 128770 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 96 tgttcatttttatcaatctcttta 119 ||||||||||||||||| |||||| Sbjct: 127275 tgttcatttttatcaatttcttta 127252
>emb|BX908748.7| Zebrafish DNA sequence from clone CH211-215D8 in linkage group 18, complete sequence Length = 212425 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 373 ctcctctttctctcagagcc 392 |||||||||||||||||||| Sbjct: 171347 ctcctctttctctcagagcc 171328
>gb|AY105542.1| Zea mays PCO091746 mRNA sequence Length = 951 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 389 agcccttgcgtactgtaggccatt 412 ||||||||||||||| |||||||| Sbjct: 900 agcccttgcgtactgcaggccatt 877
>gb|AC175032.1| Mus musculus BAC clone RP24-222L21 from chromosome 14, complete sequence Length = 204872 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aactcacattgcccaggctg 68 |||||||||||||||||||| Sbjct: 71591 aactcacattgcccaggctg 71610
>gb|AC174723.2| Mus musculus BAC clone RP23-93L3 from chromosome 14, complete sequence Length = 153644 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aactcacattgcccaggctg 68 |||||||||||||||||||| Sbjct: 85070 aactcacattgcccaggctg 85089
>dbj|D14033.1|ROHVP7P Human rotavirus gene for VP7 protein, complete cds Length = 1062 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 25 ctactactccacaaacagaa 44 |||||||||||||||||||| Sbjct: 875 ctactactccacaaacagaa 894
>gb|AC174479.2| Mus musculus BAC clone RP23-100J17 from chromosome 14, complete sequence Length = 185390 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 aactcacattgcccaggctg 68 |||||||||||||||||||| Sbjct: 83975 aactcacattgcccaggctg 83956
>emb|CT025547.17| Mouse DNA sequence from clone RP24-111B7 on chromosome 14, complete sequence Length = 178908 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 gtgtcctctgggaacatgat 358 |||||||||||||||||||| Sbjct: 157784 gtgtcctctgggaacatgat 157765
>gb|AC165285.2| Mus musculus BAC clone RP24-235I1 from chromosome 14, complete sequence Length = 171474 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 aactcacattgcccaggctg 68 |||||||||||||||||||| Sbjct: 121199 aactcacattgcccaggctg 121218 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,069,266 Number of Sequences: 3902068 Number of extensions: 5069266 Number of successful extensions: 105498 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 33 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105363 Number of HSP's gapped (non-prelim): 132 length of query: 508 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 486 effective length of database: 17,147,199,772 effective search space: 8333539089192 effective search space used: 8333539089192 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)