Clone Name	rbah61n19
Clone Library Name	barley_pub

---

No.	Definition	Score (bits)	E Value
1	gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mR...	1154	0.0
2	gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mR...	716	0.0
3	gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha for...	688	0.0
4	gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carbo...	620	e-174
5	gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA	620	e-174
6	gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5...	565	e-158
7	gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form...	511	e-142
8	emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putat...	486	e-134
9	dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ...	236	7e-59
10	dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase l...	236	7e-59
11	gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
12	gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
13	gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carb...	133	7e-28
14	dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D...	133	7e-28
15	dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	7e-28
16	dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	7e-28
17	dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	7e-28
18	dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clon...	133	7e-28
19	gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome...	133	7e-28
20	dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase s...	133	7e-28
21	gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate c...	129	1e-26
22	gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplas...	121	3e-24
23	gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate ca...	121	3e-24
24	dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clon...	121	3e-24
25	gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase ...	119	1e-23
26	gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase ...	119	1e-23
27	gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tet...	101	3e-18
28	gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase ...	98	4e-17
29	gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase ...	98	4e-17
30	gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/ox...	96	2e-16
31	gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/ox...	96	2e-16
32	gb|AY110044.1| Zea mays CL1146_1 mRNA sequence	96	2e-16
33	gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA...	88	4e-14
34	emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase	80	1e-11
35	dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
36	dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic D...	78	4e-11
37	gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosph...	68	4e-08
38	gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence	60	9e-06
39	gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) ...	60	9e-06
40	emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphat...	60	9e-06
41	gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate car...	60	9e-06
42	emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate car...	56	1e-04
43	gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, c...	52	0.002
44	emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase	52	0.002
45	gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence	50	0.009
46	gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 gen...	50	0.009
47	gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carb...	48	0.034
48	gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, part...	48	0.034
49	gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosph...	48	0.034
50	gb|AY312576.1| Larrea tridentata Rubisco activase beta form prec...	44	0.53
51	emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosph...	44	0.53
52	gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, compl...	44	0.53
53	emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, c...	44	0.53
54	gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds	44	0.53
55	gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, comp...	42	2.1
56	emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genom...	42	2.1
57	gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, comp...	42	2.1
58	dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D...	42	2.1
59	emb|Y10657.1|CLRCAGENE C.littorale rca gene	42	2.1
60	gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome...	42	2.1
61	emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa...	42	2.1
62	gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, comp...	42	2.1
63	gb|U60105.1| Bos taurus large conductance calcium-activated pota...	40	8.2
64	gb|AY312575.1| Larrea tridentata Rubisco activase alpha form pre...	40	8.2
65	ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (...	40	8.2
66	ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM001...	40	8.2
67	emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding prot...	40	8.2
68	gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complet...	40	8.2
69	gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete...	40	8.2
70	gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, comp...	40	8.2
71	gb|AF026000.2| Sus scrofa calcium-activated potassium channel al...	40	8.2
72	gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Canc...	40	8.2
73	gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, co...	40	8.2
74	ref|NM_174680.2| Bos taurus potassium large conductance calcium-...	40	8.2
75	gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306, secti...	40	8.2
76	dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138	40	8.2
77	gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRN...	40	8.2
78	gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRN...	40	8.2
79	gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRN...	40	8.2
80	emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in ...	40	8.2
81	gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, com...	40	8.2
82	ref|NM_214219.1| Sus scrofa calcium-activated potassium channel ...	40	8.2
83	gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 23...	40	8.2
84	gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone...	40	8.2

---

>gb|M55446.1|BLYRCAA1 Hordeum vulgare rubisco activase (RcaA1) mRNA, 3' end
          Length = 1394

 Score = 1154 bits (582), Expect = 0.0
 Identities = 591/594 (99%)
 Strand = Plus / Minus

                                                                        
Query: 13   aatgggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 72
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1392 aatgggtatacacaatatatttagagatatattaacaaaacatgcccagcaatcgcttgg 1333

                                                                        
Query: 73   atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 132
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1332 atgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggcatgcttaaaaggt 1273

                                                                        
Query: 133  gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 192
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1272 gtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtc 1213

                                                                        
Query: 193  ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 252
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1212 ggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttaccgtagaaggaacc 1153

                                                                        
Query: 253  agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 312
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1152 agtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 1093

                                                                        
Query: 313  aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 372
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1092 aagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcag 1033

                                                                        
Query: 373  cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 432
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1032 cttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccag 973

                                                                        
Query: 433  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 492
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 972  cctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgta 913

                                                                        
Query: 493  cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 552
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 912  cacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgat 853

                                                                  
Query: 553  cttgacgacagactcgtcactgacattgtcggtctggaagatacccttgcagac 606
            ||| |||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 852  ctttacgacagactcgtcacagacattgtcggtctggaagatacccttgcagac 799

---

>gb|M55447.1|BLYRCAA2 Hordeum vulgare rubisco activase (RcaA2) mRNA, complete cds
          Length = 1709

 Score =  716 bits (361), Expect = 0.0
 Identities = 367/369 (99%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1422 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1363

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1362 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1303

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1302 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 1243

                                                                        
Query: 418  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1242 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 1183

                                                                        
Query: 478  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 537
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1182 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 1123

                                                                        
Query: 538  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 597
            |||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1122 gaaggtgtcgacgatctttacgacagactcgtcacagacattgtcggtctggaagatacc 1063

                     
Query: 598  cttgcagac 606
            |||||||||
Sbjct: 1062 cttgcagac 1054



 Score =  389 bits (196), Expect = e-105
 Identities = 227/232 (97%), Gaps = 4/232 (1%)
 Strand = Plus / Minus

                                                                        
Query: 13   aatgggtatactcaatat-atttagagatatattaacaaaacatgcccagcaatcgcttg 71
            ||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1702 aatgggtatacacaatattatttagagatatattaacaaaacatgcccagcaatcgcttg 1643

                                                                        
Query: 72   gatgcgatgcggacttag-gtaggtaaaacatcagatattaaaagtggcatgcttaaaag 130
            |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1642 gatgcgatgcggacttagtgtaggtaaaacatcagatattaaaagtggcatgcttaaaag 1583

                                                                        
Query: 131  gtgtaaaggcagctgccgt-cgtcgctccttgccgttgggtcgtagttcttggcattttg 189
            ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1582 gtgtaaaggcagctgccgttcgtcgctccttgccgttgggtcgtagttcttggcattttg 1523

                                                                
Query: 190  gtcggtgcaaccttccggca-cgggcaaagtaccttgctgtgctcctttacc 240
            |||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 1522 gtcggtgcaaccttccggcatcgggcaaagtaccttgctgtgctcctttacc 1471

---

>gb|AY312573.1| Deschampsia antarctica Rubisco activase alpha form precursor (RCA1)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1616

 Score =  688 bits (347), Expect = 0.0
 Identities = 458/495 (92%)
 Strand = Plus / Minus

                                                                        
Query: 112  aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtc 171
            |||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 1489 aaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggttgggtc 1430

                                                                        
Query: 172  gtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgc 231
            | ||||||||||||   ||||||| |||||||||||||| |||||||| ||||| |||||
Sbjct: 1429 gaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttgttgtgc 1370

                                                                        
Query: 232  tcctttaccgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgc 291
            |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||
Sbjct: 1369 tcctttaccgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgc 1310

                                                                        
Query: 292  ctggctcatgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgag 351
            |||||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1309 ctggctcatgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaag 1250

                                                                        
Query: 352  catgtgcccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacggg 411
            |||||| |||||||| |||| |||||| || |||||||| |||||||||||||| |||||
Sbjct: 1249 catgtggccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacggg 1190

                                                                        
Query: 412  cccgtcccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgaccca 471
             ||||||||||||||||||||||||||||| |||||||| |||||||| ||    |||||
Sbjct: 1189 tccgtcccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacaccca 1130

                                                                        
Query: 472  cttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattg 531
            |||||||||||| |||||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct: 1129 cttgcgcacctcgtcgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactg 1070

                                                                        
Query: 532  tcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaa 591
            ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct: 1069 tcctgggaaggtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaa 1010

                           
Query: 592  gatacccttgcagac 606
            |||||||||||||||
Sbjct: 1009 gatacccttgcagac 995

---

>gb|AY206372.1| Triticum aestivum ribulose-1,5-bisphosphate carboxylase activase
           precursor RNA, partial cds; nuclear gene for chloroplast
           product
          Length = 850

 Score =  620 bits (313), Expect = e-174
 Identities = 355/369 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 433

                                                                       
Query: 298 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 373

                                                                       
Query: 358 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
           ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 372 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 313

                                                                       
Query: 418 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
           |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 312 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 253

                                                                       
Query: 478 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 537
           |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 252 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 193

                                                                       
Query: 538 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 597
           |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 192 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 133

                    
Query: 598 cttgcagac 606
           |||||||||
Sbjct: 132 cttgcagac 124



 Score =  248 bits (125), Expect = 2e-62
 Identities = 206/230 (89%), Gaps = 11/230 (4%)
 Strand = Plus / Minus

                                                                       
Query: 17  ggtatactcaatatatttagagatatattaacaaaacatgcccagcaatcgcttggatgc 76
           |||||||||||||| ||||    |||||||||||||||||||||||||||||||||||||
Sbjct: 764 ggtatactcaatatcttta----tatattaacaaaacatgcccagcaatcgcttggatgc 709

                                                                       
Query: 77  gatgcgg-acttaggta-----ggtaaaacatcagatattaaaagtggcatgcttaaaag 130
           ||||||| |||||||||     | |||||||||||||||||||  |||||||||||||||
Sbjct: 708 gatgcggtacttaggtacaaaggataaaacatcagatattaaat-tggcatgcttaaaag 650

                                                                       
Query: 131 gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 190
           ||||||||||||||||||||||| ||||| |||||||||||| ||||||||||| | |||
Sbjct: 649 gtgtaaaggcagctgccgtcgtcactcctcgccgttgggtcgaagttcttggcagtctgg 590

                                                             
Query: 191 tcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttacc 240
           |||||||| ||| |||| || |||||||||||||||||||| ||||||||
Sbjct: 589 tcggtgcatcctgccggtacaggcaaagtaccttgctgtgcccctttacc 540

---

>gb|BC029790.1| Homo sapiens, clone IMAGE:5192697, mRNA
          Length = 1643

 Score =  620 bits (313), Expect = e-174
 Identities = 355/369 (96%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1342 accgtagaaggtaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 1283

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1282 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 1223

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
            ||||||||||||||||||||| |||||||||||||||||||| |||||||| || |||||
Sbjct: 1222 cccgtactctagcagcttctccactgtcatctttggctgctcaaaggtcactggtccgtc 1163

                                                                        
Query: 418  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
            |||||||||||||||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 1162 ccgcgagttcaccagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 1103

                                                                        
Query: 478  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 537
            |||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 1102 cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtcgatggattgtcctgg 1043

                                                                        
Query: 538  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 597
            |||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||
Sbjct: 1042 gaaggtgtcgacgatcttgacgacggactcgtcgctgacattgtcggtctggaagatacc 983

                     
Query: 598  cttgcagac 606
            |||||||||
Sbjct: 982  cttgcagac 974



 Score =  246 bits (124), Expect = 7e-62
 Identities = 189/208 (90%), Gaps = 7/208 (3%)
 Strand = Plus / Minus

                                                                        
Query: 39   atatattaacaaaacatgcccagcaatcgcttggatgcgatgcgg-acttaggta----- 92
            ||||||||||||||||||||||||||||||||||||||||||||| |||||||||     
Sbjct: 1596 atatattaacaaaacatgcccagcaatcgcttggatgcgatgcggtacttaggtacaaag 1537

                                                                        
Query: 93   ggtaaaacatcagatattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgt 152
            | |||||||||||||||||||  |||||||||||||||||||||||||||||||||||||
Sbjct: 1536 gataaaacatcagatattaaat-tggcatgcttaaaaggtgtaaaggcagctgccgtcgt 1478

                                                                        
Query: 153  cgctccttgccgttgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgg 212
            | ||||| |||||||||||| ||||||||||| | ||||||||||| ||| |||| || |
Sbjct: 1477 cactcctcgccgttgggtcgaagttcttggcagtctggtcggtgcatcctgccggtacag 1418

                                        
Query: 213  gcaaagtaccttgctgtgctcctttacc 240
            ||||||||||||||||||| ||||||||
Sbjct: 1417 gcaaagtaccttgctgtgcccctttacc 1390

---

>gb|M55449.1|BLYRCABG Hordeum vulgare subsp. vulgare ribulose 1,5-bisphosphate carboxylase
            activase (RcaB) gene, complete cds; and ribulose
            1,5-bisphosphate carboxylase activase  (RcaA) gene,
            alternatively spliced, complete cds
          Length = 8766

 Score =  565 bits (285), Expect = e-158
 Identities = 285/285 (100%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7305 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 7246

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7245 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 7186

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7185 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 7126

                                                                        
Query: 418  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7125 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 7066

                                                         
Query: 478  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 522
            |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7065 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 7021



 Score =  454 bits (229), Expect = e-124
 Identities = 239/241 (99%), Gaps = 1/241 (0%)
 Strand = Plus / Minus

                                                                        
Query: 1    ttggtctttgccaa-tgggtatactcaatatatttagagatatattaacaaaacatgccc 59
            |||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 7765 ttggtctttgccaaatgggtatacacaatatatttagagatatattaacaaaacatgccc 7706

                                                                        
Query: 60   agcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggc 119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7705 agcaatcgcttggatgcgatgcggacttaggtaggtaaaacatcagatattaaaagtggc 7646

                                                                        
Query: 120  atgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttct 179
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7645 atgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttct 7586

                                                                        
Query: 180  tggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttac 239
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7585 tggcattttggtcggtgcaaccttccggcacgggcaaagtaccttgctgtgctcctttac 7526

             
Query: 240  c 240
            |
Sbjct: 7525 c 7525



 Score =  168 bits (85), Expect = 1e-38
 Identities = 85/85 (100%)
 Strand = Plus / Minus

                                                                        
Query: 522  caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 581
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6880 caatggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgt 6821

                                     
Query: 582  cggtctggaagatacccttgcagac 606
            |||||||||||||||||||||||||
Sbjct: 6820 cggtctggaagatacccttgcagac 6796



 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 463  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 522
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 3812 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 3753

                                    
Query: 523  aatggattgtcctgggaaggtgtc 546
             ||||| || || |||||||||||
Sbjct: 3752 gatggactgccccgggaaggtgtc 3729



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 314  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 373
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 3961 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 3902

                                         
Query: 374  ttctcgactgtcatctttggctgctcgaa 402
            ||||| |  |||||||| ||||| |||||
Sbjct: 3901 ttctctatggtcatcttgggctggtcgaa 3873

---

>gb|AY312574.1| Deschampsia antarctica Rubisco activase beta form precursor (RCA2)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1646

 Score =  511 bits (258), Expect = e-142
 Identities = 341/369 (92%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||
Sbjct: 1353 accgtagaaggaaccagtcttcatggcatccttgttcgcatcacccagagctgcctggct 1294

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            |||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 1293 catgtaagtgtccgcaagctgcacacgcttgacattgtcctgctcctggacaagcatgtg 1234

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |||| |||||| || |||||||| |||||||||||||| ||||| |||||
Sbjct: 1233 gccgtactccagcaacttctccaccgtcatcttgggctgctcgaaggtgacgggtccgtc 1174

                                                                        
Query: 418  ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
            |||||||||||||||||||||||| |||||||| |||||||| ||    |||||||||||
Sbjct: 1173 ccgcgagttcaccagcctcttgccgatgttctcaattccggtggacgacacccacttgcg 1114

                                                                        
Query: 478  cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 537
            ||||||| ||||||||||||||||||||||||||||||| ||||| ||||| ||||||||
Sbjct: 1113 cacctcaacgtcgtacacccgagcacgcagagcaccgaagaagtcgatggactgtcctgg 1054

                                                                        
Query: 538  gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 597
            ||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct: 1053 gaangtgtcgacgatcttgacgacagactcgtcgctgacgttgtcggtctggaagatacc 994

                     
Query: 598  cttgcagac 606
            |||||||||
Sbjct: 993  cttgcagac 985



 Score =  180 bits (91), Expect = 4e-42
 Identities = 171/195 (87%), Gaps = 7/195 (3%)
 Strand = Plus / Minus

                                                                        
Query: 53   catgcccagcaatcgcttggatgcgatgcgga-cttaggtag-----gtaaaacatcaga 106
            ||||||||||| ||||||| |||||||||||  ||||||||      || ||||||||||
Sbjct: 1593 catgcccagcagtcgcttgtatgcgatgcggtgcttaggtacaaagagtgaaacatcaga 1534

                                                                        
Query: 107  -tattaaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgt 165
             || | |||||||||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct: 1533 ataattaaagtggcatgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgcggt 1474

                                                                        
Query: 166  tgggtcgtagttcttggcattttggtcggtgcaaccttccggcacgggcaaagtaccttg 225
            ||||||| ||||||||||||   ||||||| |||||||||||||| |||||||| |||||
Sbjct: 1473 tgggtcgaagttcttggcatcccggtcggtacaaccttccggcacaggcaaagtgccttg 1414

                           
Query: 226  ctgtgctcctttacc 240
             ||||||||||||||
Sbjct: 1413 ttgtgctcctttacc 1399

---

>emb|AJ635203.1| Triticum durum ssp. durum partial mRNA for putative rubisco
           activase (rba1 gene)
          Length = 321

 Score =  486 bits (245), Expect = e-134
 Identities = 275/285 (96%)
 Strand = Plus / Minus

                                                                       
Query: 238 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 227

                                                                       
Query: 298 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 226 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 167

                                                                       
Query: 358 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
           |||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct: 166 cccgtactctagcagcttctcgactgtcatctttggctgctcaaaggtcactggtccgtc 107

                                                                       
Query: 418 ccgcgagttcaccagcctcttgccaatgttctcgattccggtagagccgacccacttgcg 477
           |||||||||||| ||| ||||||||||||||||||| |||||||||   |||||||||||
Sbjct: 106 ccgcgagttcacaagcttcttgccaatgttctcgataccggtagaggtcacccacttgcg 47

                                                        
Query: 478 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 522
           |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 46  cacctcgtcgtcgtacacccgagcacgcagagcaccgaaaaagtc 2

---

>dbj|AB110180.1| Oryza sativa (japonica cultivar-group) mRNA for ribulose-bisphosphate
            carboxylase activase large isoform precursor protein,
            complete cds, clone: 13YPR038
          Length = 1558

 Score =  236 bits (119), Expect = 7e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1430 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1371

                                                                        
Query: 181  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 237
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1370 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1311

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1310 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1251

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1250 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1191

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1190 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1131

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1130 cctcgagttcaccagcctcttgccaatgttctc 1098



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1081 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1022

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1021 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 962

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 961  cggaagatacccttgcagac 942

---

>dbj|AB034698.1| Oryza sativa OsrcaA1 mRNA for RuBisCO activase large isoform
            precursor, complete cds
          Length = 1623

 Score =  236 bits (119), Expect = 7e-59
 Identities = 280/333 (84%), Gaps = 3/333 (0%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1465 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1406

                                                                        
Query: 181  ggcattttggtcggtgcaaccttccggcacgggcaaagtac---cttgctgtgctccttt 237
            ||||    |||||||||||||||||||||| ||||   |||   ||||||||||||||| 
Sbjct: 1405 ggcaacagggtcggtgcaaccttccggcacaggcaggttacctgcttgctgtgctccttg 1346

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
             ||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1345 cccgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1286

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1285 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1226

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1225 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1166

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1165 cctcgagttcaccagcctcttgccaatgttctc 1133



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1116 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1057

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1056 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 997

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 996  cggaagatacccttgcagac 977

---

>gb|AC137064.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0003C04
              map S10003, complete sequence
          Length = 119238

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                          
Query: 121    tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
              ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 107158 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 107217

                                                 
Query: 181    ggcattttggtcggtgcaaccttccggcacgggca 215
              ||||    |||||||||||||||||||||| ||||
Sbjct: 107218 ggcaacagggtcggtgcaaccttccggcacaggca 107252



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                          
Query: 238    accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
              |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 108310 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 108369

                                                                          
Query: 298    catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
              || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 108370 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 108429

                                                                          
Query: 358    cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
               |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 108430 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 108489

                                               
Query: 418    ccgcgagttcaccagcctcttgccaatgttctc 450
              || ||||||||||||||||||||||||||||||
Sbjct: 108490 cctcgagttcaccagcctcttgccaatgttctc 108522



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                          
Query: 524    atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 583
              |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 108688 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 108747

                                     
Query: 584    gtctggaagatacccttgcagac 606
              ||  |||||||||||||||||||
Sbjct: 108748 gtgcggaagatacccttgcagac 108770



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                          
Query: 139    gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 198
              ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 112053 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 112112

                             
Query: 199    accttccggcacggg 213
               ||  ||||||||||
Sbjct: 112113 tcccgccggcacggg 112127



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                
Query: 467    acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 516
              ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 108539 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 108588



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                           
Query: 422    gagttcaccagcctcttgccaatgttctc 450
              ||||||||||||||| |||| ||||||||
Sbjct: 112324 gagttcaccagcctcctgccgatgttctc 112352

---

>gb|AC133008.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0026K20 map S10559, complete sequence
          Length = 115996

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                         
Query: 121   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
             ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 29039 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 29098

                                                
Query: 181   ggcattttggtcggtgcaaccttccggcacgggca 215
             ||||    |||||||||||||||||||||| ||||
Sbjct: 29099 ggcaacagggtcggtgcaaccttccggcacaggca 29133



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                         
Query: 238   accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
             |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 30187 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 30246

                                                                         
Query: 298   catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
             || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 30247 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 30306

                                                                         
Query: 358   cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
              |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 30307 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 30366

                                              
Query: 418   ccgcgagttcaccagcctcttgccaatgttctc 450
             || ||||||||||||||||||||||||||||||
Sbjct: 30367 cctcgagttcaccagcctcttgccaatgttctc 30399



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                         
Query: 524   atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 583
             |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 30565 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 30624

                                    
Query: 584   gtctggaagatacccttgcagac 606
             ||  |||||||||||||||||||
Sbjct: 30625 gtgcggaagatacccttgcagac 30647



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                         
Query: 139   gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 198
             ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 33930 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 33989

                            
Query: 199   accttccggcacggg 213
              ||  ||||||||||
Sbjct: 33990 tcccgccggcacggg 34004



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                               
Query: 467   acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 516
             ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 30416 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 30465



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                          
Query: 422   gagttcaccagcctcttgccaatgttctc 450
             ||||||||||||||| |||| ||||||||
Sbjct: 34201 gagttcaccagcctcctgccgatgttctc 34229

---

>gb|U74321.1|OSU74321 Oryza sativa ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            (rca) mRNA, complete cds
          Length = 1675

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1520 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1461

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1460 ggcaacagggtcggtgcaaccttccggcacaggca 1426



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1315 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1256

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1255 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1196

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1195 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1136

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1135 cctcgagttcaccagcctcttgccaatgttctc 1103



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1086 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1027

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1026 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 967

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 966  cggaagatacccttgcagac 947

---

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 121      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28302301 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28302360

                                                   
Query: 181      ggcattttggtcggtgcaaccttccggcacgggca 215
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28302361 ggcaacagggtcggtgcaaccttccggcacaggca 28302395



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 238      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28303449 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28303508

                                                                            
Query: 298      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28303509 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28303568

                                                                            
Query: 358      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28303569 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28303628

                                                 
Query: 418      ccgcgagttcaccagcctcttgccaatgttctc 450
                || ||||||||||||||||||||||||||||||
Sbjct: 28303629 cctcgagttcaccagcctcttgccaatgttctc 28303661



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 524      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 583
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28303827 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28303886

                                       
Query: 584      gtctggaagatacccttgcagac 606
                ||  |||||||||||||||||||
Sbjct: 28303887 gtgcggaagatacccttgcagac 28303909



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 139      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 198
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28307192 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28307251

                               
Query: 199      accttccggcacggg 213
                 ||  ||||||||||
Sbjct: 28307252 tcccgccggcacggg 28307266



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 467      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 516
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28303678 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28303727



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 422      gagttcaccagcctcttgccaatgttctc 450
                ||||||||||||||| |||| ||||||||
Sbjct: 28307463 gagttcaccagcctcctgccgatgttctc 28307491

---

>dbj|AK104332.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-032-F04, full
            insert sequence
          Length = 1682

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1514 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1455

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1454 ggcaacagggtcggtgcaaccttccggcacaggca 1420



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1309 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1250

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1249 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1190

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1189 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1130

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1129 cctcgagttcaccagcctcttgccaatgttctc 1097



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1080 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1021

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1020 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 961

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 960  cggaagatacccttgcagac 941

---

>dbj|AK064986.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C24, full
            insert sequence
          Length = 1680

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1552 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1493

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1492 ggcaacagggtcggtgcaaccttccggcacaggca 1458



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1347 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1288

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1287 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1228

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1227 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1168

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1167 cctcgagttcaccagcctcttgccaatgttctc 1135



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1118 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1059

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1058 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 999

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 998  cggaagatacccttgcagac 979

---

>dbj|AK060847.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-E04, full
            insert sequence
          Length = 1691

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1551 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1492

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1491 ggcaacagggtcggtgcaaccttccggcacaggca 1457



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1346 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1287

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1286 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1227

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1226 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1167

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1166 cctcgagttcaccagcctcttgccaatgttctc 1134



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1117 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1058

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1057 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 998

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 997  cggaagatacccttgcagac 978

---

>dbj|AK060841.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-034-D05, full
            insert sequence
          Length = 1470

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1335 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1276

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1275 ggcaacagggtcggtgcaaccttccggcacaggca 1241



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1130 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1071

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1070 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1011

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1010 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 951

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 950  cctcgagttcaccagcctcttgccaatgttctc 918



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                       
Query: 467 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 901 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 842

                                                                       
Query: 527 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 841 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 782

                               
Query: 587 tggaagatacccttgcagac 606
            |||||||||||||||||||
Sbjct: 781 cggaagatacccttgcagac 762

---

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Plus

                                                                            
Query: 121      tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
                ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 28284750 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 28284809

                                                   
Query: 181      ggcattttggtcggtgcaaccttccggcacgggca 215
                ||||    |||||||||||||||||||||| ||||
Sbjct: 28284810 ggcaacagggtcggtgcaaccttccggcacaggca 28284844



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Plus

                                                                            
Query: 238      accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
                |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 28285898 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 28285957

                                                                            
Query: 298      catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
                || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 28285958 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 28286017

                                                                            
Query: 358      cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
                 |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 28286018 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 28286077

                                                 
Query: 418      ccgcgagttcaccagcctcttgccaatgttctc 450
                || ||||||||||||||||||||||||||||||
Sbjct: 28286078 cctcgagttcaccagcctcttgccaatgttctc 28286110



 Score = 69.9 bits (35), Expect = 9e-09
 Identities = 71/83 (85%)
 Strand = Plus / Plus

                                                                            
Query: 524      atggattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcg 583
                |||||||| ||||||||| ||||||||||||||||||    ||||||   ||| ||||||
Sbjct: 28286276 atggattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcg 28286335

                                       
Query: 584      gtctggaagatacccttgcagac 606
                ||  |||||||||||||||||||
Sbjct: 28286336 gtgcggaagatacccttgcagac 28286358



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 63/75 (84%)
 Strand = Plus / Plus

                                                                            
Query: 139      gcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttggtcggtgca 198
                ||||||||||||||||||||| || || |||||||||||   |||   ||||||||||||
Sbjct: 28289641 gcagctgccgtcgtcgctcctggcggtagggtcgtagttggcggcgcgttggtcggtgca 28289700

                               
Query: 199      accttccggcacggg 213
                 ||  ||||||||||
Sbjct: 28289701 tcccgccggcacggg 28289715



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Plus

                                                                  
Query: 467      acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaa 516
                ||||||||||||||||| |||||||| || || ||||| ||||| |||||
Sbjct: 28286127 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaa 28286176



 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Plus

                                             
Query: 422      gagttcaccagcctcttgccaatgttctc 450
                ||||||||||||||| |||| ||||||||
Sbjct: 28289912 gagttcaccagcctcctgccgatgttctc 28289940

---

>dbj|AB034748.1| Oryza sativa OsrcaA2 mRNA for RuBisCO activase small isoform
            precursor, complete cds
          Length = 1706

 Score =  133 bits (67), Expect = 7e-28
 Identities = 88/95 (92%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 1556 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 1497

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1496 ggcaacagggtcggtgcaaccttccggcacaggca 1462



 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1351 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1292

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1291 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1232

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1231 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1172

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1171 cctcgagttcaccagcctcttgccaatgttctc 1139



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1122 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1063

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1062 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1003

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 1002 cggaagatacccttgcagac 983

---

>gb|AF251264.1|AF251264 Triticum aestivum ribulose bisphosphate carboxylase activase B (RcaB)
            mRNA, complete cds; nuclear gene for chloroplast product
          Length = 1525

 Score =  129 bits (65), Expect = 1e-26
 Identities = 191/233 (81%)
 Strand = Plus / Minus

                                                                        
Query: 314  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 373
            |||||||| ||||| || || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1242 agctgcacgcgcttcacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1183

                                                                        
Query: 374  ttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgcgagttcaccagc 433
            |||||||  |||||||| ||||| ||||| |||   ||||| ||||  ||||| || |||
Sbjct: 1182 ttctcgatggtcatcttgggctggtcgaacgtcggcggcccctccctggagttgacgagc 1123

                                                                        
Query: 434  ctcttgccaatgttctcgattccggtagagccgacccacttgcgcacctcatcgtcgtac 493
            | ||||   ||||||||||  ||| |   ||||||||||||||||||||| |||||||||
Sbjct: 1122 cgcttggagatgttctcgacgccgatctcgccgacccacttgcgcacctcgtcgtcgtac 1063

                                                                 
Query: 494  acccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 546
            ||||| || ||||| || ||||| ||||| ||||| || || |||||||||||
Sbjct: 1062 acccgcgcccgcagcgcgccgaagaagtcgatggactgccccgggaaggtgtc 1010

---

>gb|DQ359157.1| Oryza sativa (japonica cultivar-group) chloroplast RuBisCO small
           isoform precursor, mRNA, partial cds; nuclear gene for
           chloroplast product
          Length = 93

 Score =  121 bits (61), Expect = 3e-24
 Identities = 82/89 (92%)
 Strand = Plus / Minus

                                                                       
Query: 127 aaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcatt 186
           ||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||  
Sbjct: 93  aaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttcttggcaac 34

                                        
Query: 187 ttggtcggtgcaaccttccggcacgggca 215
             |||||||||||||||||||||| ||||
Sbjct: 33  agggtcggtgcaaccttccggcacaggca 5

---

>gb|AF349638.1|AF349638 Oryza sativa ribulose-1,5-bisphosphate carboxylase activase mRNA,
           partial cds; nuclear gene for chloroplast product
          Length = 651

 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                       
Query: 238 accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
           |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 564 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 505

                                                                       
Query: 298 catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
           || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 504 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 445

                                                                       
Query: 358 cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
            |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 444 tccgtactcgatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 385

                                            
Query: 418 ccgcgagttcaccagcctcttgccaatgttctc 450
           || ||||||||||||||||||||||||||||||
Sbjct: 384 cctcgagttcaccagcctcttgccaatgttctc 352



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                       
Query: 467 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
           ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 335 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 276

                                                                       
Query: 527 gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
           ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 275 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 216

                               
Query: 587 tggaagatacccttgcagac 606
            |||||||||||||||||||
Sbjct: 215 cggaagatacccttgcagac 196

---

>dbj|AK119513.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-200-F01, full
            insert sequence
          Length = 1721

 Score =  121 bits (61), Expect = 3e-24
 Identities = 175/213 (82%)
 Strand = Plus / Minus

                                                                        
Query: 238  accgtagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggct 297
            |||||||||||||||||||||||| || ||   |||||| ||||| ||||| |||| |||
Sbjct: 1358 accgtagaaggaaccagtcttcatggcgtcggagttagcgtcaccaagagcagcctcgct 1299

                                                                        
Query: 298  catgtaggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtg 357
            || |||    ||||| ||||||||||||||||| || ||||||||||  || ||||||| 
Sbjct: 1298 caagtactgctcagccagctgcacacgcttgacgttctcctgctccttcacaagcatgta 1239

                                                                        
Query: 358  cccgtactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtc 417
             |||||||| |  ||||| ||||  |||||||| |||||||||||   |   || || ||
Sbjct: 1238 tccgtactccatgagcttttcgatcgtcatcttgggctgctcgaactccggtgggccctc 1179

                                             
Query: 418  ccgcgagttcaccagcctcttgccaatgttctc 450
            || ||||||||||||||||||||||||||||||
Sbjct: 1178 cctcgagttcaccagcctcttgccaatgttctc 1146



 Score =  117 bits (59), Expect = 4e-23
 Identities = 87/95 (91%), Gaps = 1/95 (1%)
 Strand = Plus / Minus

                                                                        
Query: 121  tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
            ||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||
Sbjct: 1562 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctcctcgccgttgggtcg-aattctt 1504

                                               
Query: 181  ggcattttggtcggtgcaaccttccggcacgggca 215
            ||||    |||||||||||||||||||||| ||||
Sbjct: 1503 ggcaacagggtcggtgcaaccttccggcacaggca 1469



 Score =  111 bits (56), Expect = 3e-21
 Identities = 119/140 (85%)
 Strand = Plus / Minus

                                                                        
Query: 467  acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
            ||||||||||||||||| |||||||| || || ||||| ||||| ||||| || || |||
Sbjct: 1129 acccacttgcgcacctcgtcgtcgtaaacacgggcacgaagagcgccgaagaaatcgatg 1070

                                                                        
Query: 527  gattgtcctgggaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtc 586
            ||||| ||||||||| ||||||||||||||||||    ||||||   ||| |||||||| 
Sbjct: 1069 gattggcctgggaagctgtcgacgatcttgacgatgtcctcgtcggggacgttgtcggtg 1010

                                
Query: 587  tggaagatacccttgcagac 606
             |||||||||||||||||||
Sbjct: 1009 cggaagatacccttgcagac 990

---

>gb|AF338238.1|AF338238 Zantedeschia aethiopica rubisco activase (rca2) mRNA, partial cds
          Length = 1436

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 301
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1000 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 941

                                                                        
Query: 302  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 361
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 940  tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 881

                                                                        
Query: 362  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 421
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 880  tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 821

                                
Query: 422  gagttcaccagcctcttgcc 441
            ||||||||||||||||||||
Sbjct: 820  gagttcaccagcctcttgcc 801



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 469 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 528
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 773 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 714

                                             
Query: 529 ttgtcctgggaaggtgtcgacgatcttgacgaca 562
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 713 ttggccggggaaggtgtcgacgagcttgatgaca 680



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 131  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 190
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1149 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1090

                          
Query: 191  tcggtgcaaccttc 204
            ||||| ||||||||
Sbjct: 1089 tcggtacaaccttc 1076

---

>gb|AF338237.1|AF338237 Zantedeschia aethiopica rubisco activase (rca1) mRNA, partial cds
          Length = 1597

 Score =  119 bits (60), Expect = 1e-23
 Identities = 165/200 (82%)
 Strand = Plus / Minus

                                                                        
Query: 242  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 301
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1194 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1135

                                                                        
Query: 302  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 361
            ||  |||| || |||||||| | ||| || || ||||||||||| || |||||||  |||
Sbjct: 1134 tacttgtcggccagctgcaccctcttcacgttctcctgctcctgcaccagcatgttgccg 1075

                                                                        
Query: 362  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 421
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1074 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1015

                                
Query: 422  gagttcaccagcctcttgcc 441
            ||||||||||||||||||||
Sbjct: 1014 gagttcaccagcctcttgcc 995



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 469 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 528
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 967 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 908

                                             
Query: 529 ttgtcctgggaaggtgtcgacgatcttgacgaca 562
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 907 ttggccggggaaggtgtcgacgagcttgatgaca 874



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 131  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 190
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1305 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1246

                          
Query: 191  tcggtgcaaccttc 204
            ||||| ||||||||
Sbjct: 1245 tcggtacaaccttc 1232

---

>gb|DQ023668.1| Oryza sativa (indica cultivar-group) cultivar Tetep genomic
           sequence
          Length = 234

 Score =  101 bits (51), Expect = 3e-18
 Identities = 84/95 (88%)
 Strand = Plus / Minus

                                                                       
Query: 121 tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
           |||||||||| | |||||||||||||||||||||||||| |||||||||||| |||||||
Sbjct: 135 tgcttaaaagttttaaaggcagctgccgtcgtcgctcctcgccgttgggtcgaagttctt 76

                                              
Query: 181 ggcattttggtcggtgcaaccttccggcacgggca 215
           ||||    ||||||  |||||||||||||| ||||
Sbjct: 75  ggcaacagggtcgggtcaaccttccggcacaggca 41

---

>gb|AF338240.1|AF338240 Zantedeschia aethiopica rubisco activase (rca4) mRNA, partial cds
          Length = 1674

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 242  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 301
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1301 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1242

                                                                        
Query: 302  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 361
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1241 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1182

                                                                        
Query: 362  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 421
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1181 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 1122

                             
Query: 422  gagttcaccagcctctt 438
            |||||||||||||||||
Sbjct: 1121 gagttcaccagcctctt 1105



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                        
Query: 469  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 528
            |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 1074 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 1015

                                              
Query: 529  ttgtcctgggaaggtgtcgacgatcttgacgaca 562
            ||| || |||||||||||||||| ||||| ||||
Sbjct: 1014 ttggccggggaaggtgtcgacgagcttgatgaca 981



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 131  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 190
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1450 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1391

                          
Query: 191  tcggtgcaaccttc 204
            ||||| ||||||||
Sbjct: 1390 tcggtacaaccttc 1377

---

>gb|AF338239.1|AF338239 Zantedeschia aethiopica rubisco activase (rca3) mRNA, partial cds
          Length = 1494

 Score = 97.6 bits (49), Expect = 4e-17
 Identities = 160/197 (81%)
 Strand = Plus / Minus

                                                                        
Query: 242  tagaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatg 301
            |||||||| |||||||| ||||| ||||| || || ||||| |||||||||| ||||| |
Sbjct: 1164 tagaaggatccagtcttgatcgcgtcctgattggcgtcaccaagagctgcctcgctcagg 1105

                                                                        
Query: 302  taggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccg 361
            ||  |||| || |||||||| | ||| || || ||||| ||||| || ||||| |  |||
Sbjct: 1104 tacttgtcggccagctgcaccctcttcacgttctcctgttcctgcaccagcatattgccg 1045

                                                                        
Query: 362  tactctagcagcttctcgactgtcatctttggctgctcgaaggtcacgggcccgtcccgc 421
            ||||| |||||||| || |  |||||||| |||||| |||| |||   ||||| ||| ||
Sbjct: 1044 tactccagcagcttgtccagggtcatcttgggctgcgcgaacgtcggcggcccctccagc 985

                             
Query: 422  gagttcaccagcctctt 438
            |||||||||||||||||
Sbjct: 984  gagttcaccagcctctt 968



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 80/94 (85%)
 Strand = Plus / Minus

                                                                       
Query: 469 ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 528
           |||||| | |||||| |||||||| ||||  || | ||| |||||||| |||||||||||
Sbjct: 937 ccacttcctcacctcgtcgtcgtagaccctcgccctcagtgcaccgaagaagtcaatgga 878

                                             
Query: 529 ttgtcctgggaaggtgtcgacgatcttgacgaca 562
           ||| || |||||||||||||||| ||||| ||||
Sbjct: 877 ttggccggggaaggtgtcgacgagcttgatgaca 844



 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 64/74 (86%)
 Strand = Plus / Minus

                                                                        
Query: 131  gtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttcttggcattttgg 190
            ||||| ||||||||||| ||||||||||| ||||| |||||| ||||  |||||||  ||
Sbjct: 1275 gtgtacaggcagctgccatcgtcgctcctggccgtcgggtcgaagttggtggcattccgg 1216

                          
Query: 191  tcggtgcaaccttc 204
            ||||| ||||||||
Sbjct: 1215 tcggtacaaccttc 1202

---

>gb|AF305876.2| Zea mays ribulose 1,5-bisphosphate carboxylase/oxygenase activase
           precursor, mRNA, partial cds
          Length = 1336

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                       
Query: 243 agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 302
           ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 919 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 860

                                                                       
Query: 303 aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 362
           |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 859 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 800

                                                   
Query: 363 actctagcagcttctcgactgtcatctttggctgctcgaa 402
           |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 799 actccaagagcttctcgatcgttatcttgggctgctcgaa 760



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 61/71 (85%)
 Strand = Plus / Minus

                                                                       
Query: 479 acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 538
           ||||| |||||||| ||||| |||||||| || ||||| ||||| ||||| || || |||
Sbjct: 683 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaagtcgatggactggccaggg 624

                      
Query: 539 aaggtgtcgac 549
           |||||||||||
Sbjct: 623 aaggtgtcgac 613

---

>gb|AF084478.3| Zea mays ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            precursor (rca1) mRNA, complete cds
          Length = 1424

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 243  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 302
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 303  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 362
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 363  actctagcagcttctcgactgtcatctttggctgctcgaa 402
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155



 Score = 54.0 bits (27), Expect = 5e-04
 Identities = 60/71 (84%)
 Strand = Plus / Minus

                                                                        
Query: 479  acctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctggg 538
            ||||| |||||||| ||||| |||||||| || ||||| || || ||||| || || |||
Sbjct: 1078 acctcgtcgtcgtagacccgggcacgcagcgcgccgaagaaatcgatggactggccaggg 1019

                       
Query: 539  aaggtgtcgac 549
            |||||||||||
Sbjct: 1018 aaggtgtcgac 1008

---

>gb|AY110044.1| Zea mays CL1146_1 mRNA sequence
          Length = 1750

 Score = 95.6 bits (48), Expect = 2e-16
 Identities = 132/160 (82%)
 Strand = Plus / Minus

                                                                        
Query: 243  agaaggaaccagtcttcatcgcatcctggttagcatcacccagagctgcctggctcatgt 302
            ||||||| ||||||||||| || |||| ||| || ||||| ||||| |||| | | | ||
Sbjct: 1314 agaaggagccagtcttcatggcgtcctcgttggcttcaccaagagcagcctcgttgaggt 1255

                                                                        
Query: 303  aggtgtcagcaagctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgt 362
            |  ||||||||||||||||||||||||| || |||||||||   || |||||||| ||||
Sbjct: 1254 acttgtcagcaagctgcacacgcttgacgttctcctgctccgccaccagcatgtgtccgt 1195

                                                    
Query: 363  actctagcagcttctcgactgtcatctttggctgctcgaa 402
            |||| |  ||||||||||  || ||||| |||||||||||
Sbjct: 1194 actccaagagcttctcgatcgttatcttgggctgctcgaa 1155

---

>gb|M55448.1|BLYRCAB Hordeum vulgare rubisco activase (RcaB) mRNA, complete cds
          Length = 1656

 Score = 87.7 bits (44), Expect = 4e-14
 Identities = 74/84 (88%)
 Strand = Plus / Minus

                                                                        
Query: 463  gccgacccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtc 522
            ||||||||||||||||||||| |||||||||||||| || ||||| || ||||| |||||
Sbjct: 1243 gccgacccacttgcgcacctcgtcgtcgtacacccgtgcccgcagcgcgccgaagaagtc 1184

                                    
Query: 523  aatggattgtcctgggaaggtgtc 546
             ||||| || || |||||||||||
Sbjct: 1183 gatggactgccccgggaaggtgtc 1160



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 77/89 (86%)
 Strand = Plus / Minus

                                                                        
Query: 314  agctgcacacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagc 373
            ||||||||||||||||| || |||||||||||||| |||||||| |||||||| |  |||
Sbjct: 1392 agctgcacacgcttgacgttctcctgctcctggaccagcatgtggccgtactccatgagc 1333

                                         
Query: 374  ttctcgactgtcatctttggctgctcgaa 402
            ||||| |  |||||||| ||||| |||||
Sbjct: 1332 ttctctatggtcatcttgggctggtcgaa 1304

---

>emb|X60093.1|BPNIR1 B.pendula mRNA for nitrite reductase
          Length = 2472

 Score = 79.8 bits (40), Expect = 1e-11
 Identities = 97/116 (83%)
 Strand = Plus / Minus

                                                                       
Query: 260 atcgcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgc 319
           |||| ||||| ||| ||||| || |||||||| ||||||| ||| ||||| || || || 
Sbjct: 118 atcgaatcctcgtttgcatctccaagagctgcttggctcaagtacgtgtctgccagttga 59

                                                                   
Query: 320 acacgcttgacattgtcctgctcctggacgagcatgtgcccgtactctagcagctt 375
           || | ||| |||||||||||||||||||| |||||||  || ||||||||||||||
Sbjct: 58  actctcttcacattgtcctgctcctggacaagcatgtttccatactctagcagctt 3

---

>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                           
Query: 121     tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
               |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 4541413 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 4541354

                                                  
Query: 181     ggcattttggtcggtgcaaccttccggcacgggca 215
               ||||    |||||||||||||||||||||| ||||
Sbjct: 4541353 ggcaacagggtcggtgcaaccttccggcacaggca 4541319

---

>dbj|AP005592.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, PAC
             clone:P0638A12
          Length = 140731

 Score = 77.8 bits (39), Expect = 4e-11
 Identities = 81/95 (85%)
 Strand = Plus / Minus

                                                                         
Query: 121   tgcttaaaaggtgtaaaggcagctgccgtcgtcgctccttgccgttgggtcgtagttctt 180
             |||||| ||||||||||||||| ||| ||||| |||| | |||||||||||  |||| ||
Sbjct: 84787 tgcttagaaggtgtaaaggcagatgctgtcgttgctcatcgccgttgggtcaaagttgtt 84728

                                                
Query: 181   ggcattttggtcggtgcaaccttccggcacgggca 215
             ||||    |||||||||||||||||||||| ||||
Sbjct: 84727 ggcaacagggtcggtgcaaccttccggcacaggca 84693

---

>gb|AF329934.1|AF329934 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
            activase 1 mRNA, complete cds
          Length = 1559

 Score = 67.9 bits (34), Expect = 4e-08
 Identities = 40/42 (95%)
 Strand = Plus / Minus

                                                      
Query: 505  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtc 546
            ||||||||||||||||||||||||||| || |||||||||||
Sbjct: 1113 cagagcaccgaaaaagtcaatggattggcccgggaaggtgtc 1072

---

>gb|BT012795.1| Lycopersicon esculentum clone 113794R, mRNA sequence
          Length = 1519

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 505  cagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 558
            |||||||||||| || ||||| |||||||| |||||| | ||||||||||||||
Sbjct: 1126 cagagcaccgaagaaatcaatagattgtccagggaagctatcgacgatcttgac 1073

---

>gb|AY461703.1| Chlamydomonas reinhardtii rubisco activase (Rca) gene, complete cds
          Length = 4500

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 485  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 544
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 2723 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 2664

              
Query: 545  tc 546
            ||
Sbjct: 2663 tc 2662

---

>emb|Z14981.1|NTRCATA1 N.tabacum Rca mRNA for ribulosebisphosphate carboxylase activase
           (pTA1.1)
          Length = 1011

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 102/126 (80%)
 Strand = Plus / Minus

                                                                       
Query: 478 cacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgg 537
           ||||||||| ||||| || || || | ||||||||| || |||||||| |||||||| ||
Sbjct: 462 cacctcatcatcgtatactcgtgccctcagagcaccaaagaagtcaatagattgtccagg 403

                                                                       
Query: 538 gaaggtgtcgacgatcttgacgacagactcgtcactgacattgtcggtctggaagatacc 597
           |||||| ||||| ||||| || ||||  || |||   || |||||||||  ||| |||||
Sbjct: 402 gaaggtatcgacaatctttacaacagcttcctcaggcacgttgtcggtcctgaaaatacc 343

                 
Query: 598 cttgca 603
           ||||||
Sbjct: 342 cttgca 337

---

>gb|M62962.1|CRERBCOA C.reinhardtii ribulose 1,5-bisphosphate carboxylase/oxygenase
            activase mRNA, complete cds
          Length = 1693

 Score = 60.0 bits (30), Expect = 9e-06
 Identities = 54/62 (87%)
 Strand = Plus / Minus

                                                                        
Query: 485  tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 544
            ||||||||||| || |||||||| || ||||| ||||||||||| || || |||||||||
Sbjct: 1033 tcgtcgtacacgcgggcacgcagggcgccgaagaagtcaatggactggccggggaaggtg 974

              
Query: 545  tc 546
            ||
Sbjct: 973  tc 972

---

>emb|Z21794.1|MDRBSCACA M.domestica ribulose-1,5-bisphosphate carboxylase/oxygenase activase
            mRNA
          Length = 1853

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 106/132 (80%)
 Strand = Plus / Minus

                                                                        
Query: 271  gttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgac 330
            |||||||||||| ||||| |||| ||||| |||  | ||||| |  || || | ||| ||
Sbjct: 1363 gttagcatcaccaagagcagcctcgctcaagtacttatcagccaattgaactctcttcac 1304

                                                                        
Query: 331  attgtcctgctcctggacgagcatgtgcccgtactctagcagcttctcgactgtcatctt 390
            ||| || ||||| ||||| |||||||  |||||||| || ||||| ||||  ||||||||
Sbjct: 1303 attctcttgctcttggacaagcatgtttccgtactcgaggagcttttcgatagtcatctt 1244

                        
Query: 391  tggctgctcgaa 402
             |||||||||||
Sbjct: 1243 cggctgctcgaa 1232



 Score = 44.1 bits (22), Expect = 0.53
 Identities = 64/78 (82%)
 Strand = Plus / Minus

                                                                        
Query: 469  ccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgga 528
            |||||| | ||| ||||||||||| |||| ||| | ||  ||||| || || ||||| ||
Sbjct: 1165 ccacttcctcacttcatcgtcgtaaaccctagccctcaaggcaccaaagaaatcaataga 1106

                              
Query: 529  ttgtcctgggaaggtgtc 546
            ||| ||||||||||||||
Sbjct: 1105 ttggcctgggaaggtgtc 1088

---

>gb|AY117142.1| Chenopodium quinoa rubisco activase (rca) mRNA, complete cds
          Length = 1809

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 44/50 (88%)
 Strand = Plus / Minus

                                                              
Query: 509  gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 558
            |||||||| || ||||| ||||| || |||||||||||||||| ||||||
Sbjct: 1164 gcaccgaagaaatcaatagattggccagggaaggtgtcgacgagcttgac 1115

---

>emb|X67674.1|CSRUBAC C.sativus mRNA for rubisco activase
          Length = 2031

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 68/82 (82%)
 Strand = Plus / Minus

                                                                        
Query: 468  cccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatgg 527
            ||||||| | ||| |||||||| || || ||||| | || |||||| || ||||| || |
Sbjct: 1161 cccactttctcacttcatcgtcataaactcgagctctcaaagcaccaaagaagtctattg 1102

                                  
Query: 528  attgtcctgggaaggtgtcgac 549
            | ||||||||||||||||||||
Sbjct: 1101 actgtcctgggaaggtgtcgac 1080

---

>gb|DQ430613.1| Sorghum propinquum locus S10003 genomic sequence
          Length = 619

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 485 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 544
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 618 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 559

                            
Query: 545 tcgacgatcttgacgac 561
           ||||||| || ||||||
Sbjct: 558 tcgacgagctggacgac 542

---

>gb|DQ430604.1| Sorghum bicolor voucher NSL56174 locus S10003 genomic sequence
          Length = 627

 Score = 50.1 bits (25), Expect = 0.009
 Identities = 64/77 (83%)
 Strand = Plus / Minus

                                                                       
Query: 485 tcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtg 544
           |||||||||||||| || || || || ||||| ||||| ||||| || || ||||||| |
Sbjct: 626 tcgtcgtacacccgggcgcggagggcgccgaagaagtcgatggactggcccgggaaggcg 567

                            
Query: 545 tcgacgatcttgacgac 561
           ||||||| || ||||||
Sbjct: 566 tcgacgagctggacgac 550

---

>gb|DQ233255.1| Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase alpha 2 mRNA, complete cds
          Length = 1433

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 488 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 547
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 944 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 885

               
Query: 548 acga 551
           ||||
Sbjct: 884 acga 881

---

>gb|AY130300.1| Medicago sativa rubisco activase (Rca) mRNA, partial cds
          Length = 1063

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 75/92 (81%)
 Strand = Plus / Minus

                                                                       
Query: 467 acccacttgcgcacctcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatg 526
           |||||||| | ||| ||||| |||||||| | ||| | ||  |||||||| || || |||
Sbjct: 589 acccacttcctcacttcatcatcgtacactctagccctcaatgcaccgaagaaatcgatg 530

                                           
Query: 527 gattgtcctgggaaggtgtcgacgatcttgac 558
           ||||| || ||||||||||| || ||||||||
Sbjct: 529 gattggccagggaaggtgtcaacaatcttgac 498

---

>gb|AF329935.1|AF329935 Gossypium hirsutum ribulose-1,5-bisphosphate carboxylase/oxygenase
           activase 2 mRNA, partial cds
          Length = 1462

 Score = 48.1 bits (24), Expect = 0.034
 Identities = 54/64 (84%)
 Strand = Plus / Minus

                                                                       
Query: 488 tcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaaggtgtcg 547
           ||||| |||||||| | ||  |||||||| || || |||||||| || ||||||||||||
Sbjct: 945 tcgtaaacccgagccctcaaggcaccgaagaaatcgatggattggccggggaaggtgtcg 886

               
Query: 548 acga 551
           ||||
Sbjct: 885 acga 882

---

>gb|AY312576.1| Larrea tridentata Rubisco activase beta form precursor (RCA2) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1694

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                              
Query: 263  gcatcctggttagcatcacccagagctgcctggctcatgtaggtgtcagc 312
            |||||||||||||||||||| || || ||||  ||||||||  |||||||
Sbjct: 1355 gcatcctggttagcatcaccaagggcagcctcactcatgtacttgtcagc 1306

---

>emb|Z14979.1|NTRCAJQ11 N.tabacum Rca gene for ribulose bisphosphate carboxyase activase
           (pJQ11)
          Length = 883

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 43/50 (86%)
 Strand = Plus / Minus

                                                             
Query: 509 gcaccgaaaaagtcaatggattgtcctgggaaggtgtcgacgatcttgac 558
           |||||||||||||| || |||||||| |||||| | || || ||||||||
Sbjct: 345 gcaccgaaaaagtcgatagattgtccagggaagttatcaacaatcttgac 296

---

>gb|AC114810.4| Homo sapiens BAC clone RP11-1293J14 from 2, complete sequence
          Length = 119249

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 276   catcacccagagctgcctggct 297
             ||||||||||||||||||||||
Sbjct: 51275 catcacccagagctgcctggct 51254

---

>emb|BX000451.4| Zebrafish DNA sequence from clone CH211-30E10, complete sequence
          Length = 153155

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 26    aatatatttagagatatattaa 47
             ||||||||||||||||||||||
Sbjct: 67942 aatatatttagagatatattaa 67963

---

>gb|J03610.1|SPIRBCO Spinach rubisco activase mRNA, complete cds
          Length = 1832

 Score = 44.1 bits (22), Expect = 0.53
 Identities = 58/70 (82%)
 Strand = Plus / Minus

                                                                        
Query: 482  tcatcgtcgtacacccgagcacgcagagcaccgaaaaagtcaatggattgtcctgggaag 541
            ||||||||||| || ||||| | ||  || ||||||||||| || |||||||| ||||||
Sbjct: 1305 tcatcgtcgtatacacgagccctcaacgctccgaaaaagtcgatagattgtccagggaag 1246

                      
Query: 542  gtgtcgacga 551
            | ||| ||||
Sbjct: 1245 gcgtcaacga 1236

---

>gb|AC138278.9| Mus musculus chromosome 8, clone RP23-378E4, complete sequence
          Length = 177245

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 28    tatatttagagatatattaac 48
             |||||||||||||||||||||
Sbjct: 12315 tatatttagagatatattaac 12335

---

>emb|BX572599.1| Rhodopseudomonas palustris CGA009 complete genome; segment 7/16
          Length = 349142

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 536  gggaaggtgtcgacgatcttg 556
            |||||||||||||||||||||
Sbjct: 3653 gggaaggtgtcgacgatcttg 3673

---

>gb|AC161354.2| Mus musculus chromosome 8, clone RP23-373C4, complete sequence
          Length = 98660

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 28    tatatttagagatatattaac 48
             |||||||||||||||||||||
Sbjct: 66387 tatatttagagatatattaac 66367

---

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 97      aaacatcagatattaaaagtg 117
               |||||||||||||||||||||
Sbjct: 3040440 aaacatcagatattaaaagtg 3040420

---

>emb|Y10657.1|CLRCAGENE C.littorale rca gene
          Length = 2513

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 314  agctgcacacgcttgacattgtcctgctc 342
            |||||||| ||||||||||| ||||||||
Sbjct: 2133 agctgcacgcgcttgacattctcctgctc 2105

---

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 97      aaacatcagatattaaaagtg 117
               |||||||||||||||||||||
Sbjct: 3040385 aaacatcagatattaaaagtg 3040365

---

>emb|AL731748.3|CNS08C7X Oryza sativa chromosome 12, . BAC OSJNBa0095K18 of library OSJNBa from
              chromosome 12 of cultivar Nipponbare of ssp. japonica of
              Oryza sativa (rice), complete sequence
          Length = 159711

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 97     aaacatcagatattaaaagtg 117
              |||||||||||||||||||||
Sbjct: 114403 aaacatcagatattaaaagtg 114423

---

>gb|AC164586.7| Mus musculus chromosome 8, clone RP24-258B3, complete sequence
          Length = 105452

 Score = 42.1 bits (21), Expect = 2.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 28   tatatttagagatatattaac 48
            |||||||||||||||||||||
Sbjct: 6217 tatatttagagatatattaac 6197

---

>gb|U60105.1| Bos taurus large conductance calcium-activated potassium channel
            alpha subunit mRNA, partial cds
          Length = 3448

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1542 catcgcccagagctgcctggctca 1565

---

>gb|AY312575.1| Larrea tridentata Rubisco activase alpha form precursor (RCA1) mRNA,
            complete cds; nuclear gene for chloroplast product
          Length = 1724

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 68/84 (80%)
 Strand = Plus / Minus

                                                                        
Query: 272  ttagcatcacccagagctgcctggctcatgtaggtgtcagcaagctgcacacgcttgaca 331
            ||||||||||| ||||| |||| |  ||||||  ||||||| |  || || | |||||| 
Sbjct: 1346 ttagcatcaccaagagcagcctcggacatgtatttgtcagctaattgaactctcttgacg 1287

                                    
Query: 332  ttgtcctgctcctggacgagcatg 355
            || |||||||||||||| ||||||
Sbjct: 1286 ttctcctgctcctggacaagcatg 1263

---

>ref|XM_765396.1| Giardia lamblia ATCC 50803 heat shock protein (hsp70) partial mRNA
          Length = 3732

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 3    ggtctttgccaatgggtata 22
            ||||||||||||||||||||
Sbjct: 2247 ggtctttgccaatgggtata 2266

---

>ref|XM_751239.1| Ustilago maydis 521 hypothetical protein (UM00185.1) partial mRNA
          Length = 531

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 307 gtcagcaagctgcacacgct 326
           ||||||||||||||||||||
Sbjct: 242 gtcagcaagctgcacacgct 223

---

>emb|Z73941.1|LJRAB7B L.japonicus mRNA for small GTP-binding protein, RAB7B
          Length = 1010

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 554 ttgacgacagactcgtcact 573
           ||||||||||||||||||||
Sbjct: 289 ttgacgacagactcgtcact 308

---

>gb|AC019210.7| Homo sapiens BAC clone RP11-449G3 from 7, complete sequence
          Length = 177402

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tcagatattaaaagtggcat 121
              ||||||||||||||||||||
Sbjct: 141058 tcagatattaaaagtggcat 141077

---

>gb|AC011228.9| Homo sapiens BAC clone GS1-18A18 from 7, complete sequence
          Length = 163782

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 102    tcagatattaaaagtggcat 121
              ||||||||||||||||||||
Sbjct: 142564 tcagatattaaaagtggcat 142583

---

>gb|AC140953.1| Pan troglodytes BAC clone RP43-37K18 from 7, complete sequence
          Length = 204813

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tcagatattaaaagtggcat 121
             ||||||||||||||||||||
Sbjct: 95930 tcagatattaaaagtggcat 95911

---

>gb|AF026000.2| Sus scrofa calcium-activated potassium channel alpha subunit mRNA,
            complete cds
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC139338.3| Homo sapiens 3 BAC RP11-449O23 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 166149

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 26    aatatatttagagatatatt 45
             ||||||||||||||||||||
Sbjct: 30454 aatatatttagagatatatt 30473

---

>gb|AC161351.3| Mus musculus chromosome 15, clone RP24-142I15, complete sequence
          Length = 161308

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 326    ttgacattgtcctgctcctg 345
              ||||||||||||||||||||
Sbjct: 126438 ttgacattgtcctgctcctg 126419

---

>ref|NM_174680.2| Bos taurus potassium large conductance calcium-activated channel,
            subfamily M, alpha member 1 (KCNMA1), mRNA
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>gb|AE011750.1| Xanthomonas axonopodis pv. citri str. 306,  section 128 of 469 of the
            complete genome
          Length = 11388

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                        
Query: 130  ggtgtaaaggcagctgccgtcgtcgctc 157
            |||||| |||| ||||||||||||||||
Sbjct: 5160 ggtgtacaggctgctgccgtcgtcgctc 5133

---

>dbj|AP007170.1| Aspergillus oryzae RIB40 genomic DNA, SC138
          Length = 504369

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 50    aaacatgcccagcaatcgcttgga 73
             |||||||||||||||||| |||||
Sbjct: 41692 aaacatgcccagcaatcgattgga 41715

---

>gb|AY033474.1| Bos taurus BK potassium ion channel isoform C mRNA, partial cds,
            alternatively spliced
          Length = 3430

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1636 catcgcccagagctgcctggctca 1659

---

>gb|AY033473.1| Bos taurus BK potassium ion channel isoform B mRNA, complete cds,
            alternatively spliced
          Length = 4490

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 2003 catcgcccagagctgcctggctca 2026

---

>gb|AY033472.1| Bos taurus BK potassium ion channel isoform A mRNA, complete cds,
            alternatively spliced
          Length = 6183

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1912 catcgcccagagctgcctggctca 1935

---

>emb|BX000985.18| Zebrafish DNA sequence from clone DKEY-13M3 in linkage group 15,
             complete sequence
          Length = 134752

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   tggcatgcttaaaaggtgta 135
             ||||||||||||||||||||
Sbjct: 78235 tggcatgcttaaaaggtgta 78254

---

>gb|AC102845.9| Mus musculus chromosome 15, clone RP24-389O7, complete sequence
          Length = 125424

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 326    ttgacattgtcctgctcctg 345
              ||||||||||||||||||||
Sbjct: 106960 ttgacattgtcctgctcctg 106979

---

>ref|NM_214219.1| Sus scrofa calcium-activated potassium channel alpha subunit
            (KCNMA1), mRNA
          Length = 3459

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 276  catcacccagagctgcctggctca 299
            |||| |||||||||||||||||||
Sbjct: 1596 catcgcccagagctgcctggctca 1619

---

>gb|AC007625.2|AC007625 Genomic sequence of Homo sapiens clone 2314F2 from chromosome 18,
             complete sequence
          Length = 174701

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 26    aatatatttagagatatatt 45
             ||||||||||||||||||||
Sbjct: 62504 aatatatttagagatatatt 62485

---

>gb|AC091764.35| Mus musculus strain C57BL/6J chromosome 10 clone rp23-202b12, complete
              sequence
          Length = 230848

 Score = 40.1 bits (20), Expect = 8.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 101    atcagatattaaaagtggcatgct 124
              ||||||||||||||||| ||||||
Sbjct: 127875 atcagatattaaaagtgccatgct 127852


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,067,334
Number of Sequences: 3902068
Number of extensions: 4067334
Number of successful extensions: 75094
Number of sequences better than 10.0: 84
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 74719
Number of HSP's gapped (non-prelim): 315
length of query: 606
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 583
effective length of database: 17,143,297,704
effective search space: 9994542561432
effective search space used: 9994542561432
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

---