ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n17
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 ant... 35 0.15
2DUFFY_PAPHA (Q95LG5) Duffy antigen/chemokine receptor (CD234 ant... 35 0.25
3DUFFY_MACMU (Q95LF2) Duffy antigen/chemokine receptor (CD234 ant... 35 0.25
4DUFFY_HUMAN (Q16570) Duffy antigen/chemokine receptor (Fy glycop... 35 0.25
5DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 ant... 34 0.32
6DUFFY_SAGIM (Q95LF7) Duffy antigen/chemokine receptor (CD234 ant... 34 0.42
7DUFFY_GORGO (Q95LF9) Duffy antigen/chemokine receptor (CD234 ant... 34 0.42
8DUFFY_CEBAP (Q95LF4) Duffy antigen/chemokine receptor (CD234 ant... 33 0.55
9DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 ant... 31 3.6
10DUFFY_SAIBB (Q95LF5) Duffy antigen/chemokine receptor (CD234 ant... 30 8.0

>DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 334

 Score = 35.4 bits (80), Expect = 0.15
 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%)
 Frame = -1

Query: 606 WSKHAMLQL-EIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRA 433
           W  H M+ + +   R+  +L++TC++  ++  M   TE+ ++ + VATPLLLA   H + 
Sbjct: 251 WWPHGMVLIFDALVRSKTVLLYTCQSQKILDAMLNVTEALSMLHCVATPLLLALFCH-QT 309

Query: 432 HARTLAHLTEP 400
             R+L+ L+ P
Sbjct: 310 TRRSLSSLSLP 320



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>DUFFY_PAPHA (Q95LG5) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 309

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 310 QATRTLLPSLPLP 322



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>DUFFY_MACMU (Q95LF2) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 335

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H
Sbjct: 253 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 308

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 309 QATRTLLPSLPLP 321



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>DUFFY_HUMAN (Q16570) Duffy antigen/chemokine receptor (Fy glycoprotein) (GpFy)|
           (Glycoprotein D) (Plasmodium vivax receptor) (CD234
           antigen)
          Length = 336

 Score = 34.7 bits (78), Expect = 0.25
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 309

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 310 QATRTLLPSLPLP 322



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>DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 34.3 bits (77), Expect = 0.32
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A   + L+    E+ A+ + VATPLLLA       H
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLARQALDLLLNLAEALAILHCVATPLLLALF----CH 309

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 310 QATRTLLPSLPLP 322



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>DUFFY_SAGIM (Q95LF7) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A  V+ L+    E+ A+ + VATPLLLA   H    
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALFCHQA-- 311

Query: 429 ARTLAHLTEPPLP 391
            RTL     P LP
Sbjct: 312 TRTLV----PSLP 320



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>DUFFY_GORGO (Q95LF9) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 33.9 bits (76), Expect = 0.42
 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A   + L+    E+ A+ + VATPL+LA   H    
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLILALFYHQA-- 311

Query: 429 ARTLAHLTEPPLP 391
            RTL  L   PLP
Sbjct: 312 TRTL--LPSLPLP 322



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>DUFFY_CEBAP (Q95LF4) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 33.5 bits (75), Expect = 0.55
 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+   R+  LL+ TC A  V+ L+    E+  + + VATPLLLA       H
Sbjct: 254 WPHGVVLGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALTIVHCVATPLLLALF----CH 309

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 310 QATRTLLPSLPLP 322



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>DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 330

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVV-FLMFKTESTALRYVVATPLLLARLGHPRAH 430
           W +   L L+   R+  +++ TC A   +  L+   E+ A+ + VATPLLLA + +   H
Sbjct: 248 WPQGMTLGLDSLVRSKAIVVSTCPAQQALDMLLDVAEALAILHCVATPLLLAWVCYQATH 307

Query: 429 ARTLAHLTEPP 397
                  T PP
Sbjct: 308 -------TSPP 311



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>DUFFY_SAIBB (Q95LF5) Duffy antigen/chemokine receptor (CD234 antigen)|
          Length = 336

 Score = 29.6 bits (65), Expect = 8.0
 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
 Frame = -1

Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430
           W    +L L+    +   L+ TC A  V+ L+    E+ A+ + VATPLLLA       H
Sbjct: 254 WPHGLVLGLDFLVGSKLSLLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALF----CH 309

Query: 429 ARTLAHLTEPPLP 391
             T   L   PLP
Sbjct: 310 QTTRTLLPSLPLP 322


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 96,968,032
Number of Sequences: 219361
Number of extensions: 2031259
Number of successful extensions: 5079
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 4841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5078
length of database: 80,573,946
effective HSP length: 108
effective length of database: 56,882,958
effective search space used: 6029593548
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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