ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61n17 |
|---|---|
| Clone Library Name | barley_pub |
>DUFFY_MOUSE (Q9QUI6) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 334 Score = 35.4 bits (80), Expect = 0.15 Identities = 23/71 (32%), Positives = 42/71 (59%), Gaps = 2/71 (2%) Frame = -1 Query: 606 WSKHAMLQL-EIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRA 433 W H M+ + + R+ +L++TC++ ++ M TE+ ++ + VATPLLLA H + Sbjct: 251 WWPHGMVLIFDALVRSKTVLLYTCQSQKILDAMLNVTEALSMLHCVATPLLLALFCH-QT 309 Query: 432 HARTLAHLTEP 400 R+L+ L+ P Sbjct: 310 TRRSLSSLSLP 320
>DUFFY_PAPHA (Q95LG5) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A + L+ E+ A+ + VATPLLLA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 309 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 310 QATRTLLPSLPLP 322
>DUFFY_MACMU (Q95LF2) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 335 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A + L+ E+ A+ + VATPLLLA H Sbjct: 253 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 308 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 309 QATRTLLPSLPLP 321
>DUFFY_HUMAN (Q16570) Duffy antigen/chemokine receptor (Fy glycoprotein) (GpFy)| (Glycoprotein D) (Plasmodium vivax receptor) (CD234 antigen) Length = 336 Score = 34.7 bits (78), Expect = 0.25 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A + L+ E+ A+ + VATPLLLA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLLLALF----CH 309 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 310 QATRTLLPSLPLP 322
>DUFFY_PANTR (Q95LF3) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 34.3 bits (77), Expect = 0.32 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A + L+ E+ A+ + VATPLLLA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLARQALDLLLNLAEALAILHCVATPLLLALF----CH 309 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 310 QATRTLLPSLPLP 322
>DUFFY_SAGIM (Q95LF7) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 33.9 bits (76), Expect = 0.42 Identities = 28/73 (38%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A V+ L+ E+ A+ + VATPLLLA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALFCHQA-- 311 Query: 429 ARTLAHLTEPPLP 391 RTL P LP Sbjct: 312 TRTLV----PSLP 320
>DUFFY_GORGO (Q95LF9) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 33.9 bits (76), Expect = 0.42 Identities = 27/73 (36%), Positives = 37/73 (50%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A + L+ E+ A+ + VATPL+LA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLSTCLAQQALDLLLNLAEALAILHCVATPLILALFYHQA-- 311 Query: 429 ARTLAHLTEPPLP 391 RTL L PLP Sbjct: 312 TRTL--LPSLPLP 322
>DUFFY_CEBAP (Q95LF4) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 33.5 bits (75), Expect = 0.55 Identities = 26/73 (35%), Positives = 35/73 (47%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ R+ LL+ TC A V+ L+ E+ + + VATPLLLA H Sbjct: 254 WPHGVVLGLDFLVRSKLLLLPTCLAQQVLDLLLNLAEALTIVHCVATPLLLALF----CH 309 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 310 QATRTLLPSLPLP 322
>DUFFY_BOVIN (Q9GLX0) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 330 Score = 30.8 bits (68), Expect = 3.6 Identities = 22/71 (30%), Positives = 35/71 (49%), Gaps = 1/71 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVV-FLMFKTESTALRYVVATPLLLARLGHPRAH 430 W + L L+ R+ +++ TC A + L+ E+ A+ + VATPLLLA + + H Sbjct: 248 WPQGMTLGLDSLVRSKAIVVSTCPAQQALDMLLDVAEALAILHCVATPLLLAWVCYQATH 307 Query: 429 ARTLAHLTEPP 397 T PP Sbjct: 308 -------TSPP 311
>DUFFY_SAIBB (Q95LF5) Duffy antigen/chemokine receptor (CD234 antigen)| Length = 336 Score = 29.6 bits (65), Expect = 8.0 Identities = 25/73 (34%), Positives = 34/73 (46%), Gaps = 1/73 (1%) Frame = -1 Query: 606 WSKHAMLQLEIESRTT*LLIFTCEAMVVVFLMFK-TESTALRYVVATPLLLARLGHPRAH 430 W +L L+ + L+ TC A V+ L+ E+ A+ + VATPLLLA H Sbjct: 254 WPHGLVLGLDFLVGSKLSLLPTCLAQQVLDLLLNLAEALAIVHCVATPLLLALF----CH 309 Query: 429 ARTLAHLTEPPLP 391 T L PLP Sbjct: 310 QTTRTLLPSLPLP 322 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 96,968,032 Number of Sequences: 219361 Number of extensions: 2031259 Number of successful extensions: 5079 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 4841 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5078 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 6029593548 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
