ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n16
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)... 82 7e-16
2CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)... 43 6e-04
3CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H... 37 0.033
4CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H... 35 0.097
5CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)... 34 0.22
6CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 ... 33 0.48
7SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) ... 31 2.4
8CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secret... 30 4.1
9PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC ... 30 5.3
10YXX5_CAEEL (Q18179) Putative neuropeptide Y receptor (NPY-R) 29 9.1

>CAX1A_ORYSA (Q769E5) Vacuolar cation/proton exchanger 1a (Ca(2+)/H(+) exchanger|
           1a) (OsCAX1a)
          Length = 451

 Score = 82.4 bits (202), Expect = 7e-16
 Identities = 39/50 (78%), Positives = 40/50 (80%)
 Frame = -2

Query: 528 TSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGTLLDVPMGPMIVQVA 379
           TSHYLKG+LLLLCYIVIGACFFV RQ   HAN NG LLDVP G M VQ A
Sbjct: 402 TSHYLKGILLLLCYIVIGACFFVARQPAGHANSNGALLDVPTGSMSVQAA 451



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>CAX1B_ORYSA (Q5TKG3) Vacuolar cation/proton exchanger 1b (Ca(2+)/H(+) exchanger|
           1b) (OsCAX1b)
          Length = 453

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 17/25 (68%), Positives = 21/25 (84%)
 Frame = -2

Query: 525 SHYLKGVLLLLCYIVIGACFFVTRQ 451
           SHYLKG++L+LCY VI  CFFV R+
Sbjct: 413 SHYLKGLILVLCYAVISVCFFVIRR 437



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>CAX2_ORYSA (Q5KQN0) Vacuolar cation/proton exchanger 2 (Ca(2+)/H(+) exchanger|
           2) (OsCAX2)
          Length = 437

 Score = 37.0 bits (84), Expect = 0.033
 Identities = 13/23 (56%), Positives = 20/23 (86%)
 Frame = -2

Query: 528 TSHYLKGVLLLLCYIVIGACFFV 460
           TS+Y KG++L+LCY+++ A FFV
Sbjct: 405 TSNYFKGLMLILCYLIVAASFFV 427



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>CAX3_ORYSA (Q6K1C4) Vacuolar cation/proton exchanger 3 (Ca(2+)/H(+) exchanger|
           3) (OsCAX3)
          Length = 417

 Score = 35.4 bits (80), Expect = 0.097
 Identities = 12/22 (54%), Positives = 20/22 (90%)
 Frame = -2

Query: 525 SHYLKGVLLLLCYIVIGACFFV 460
           ++YLKG++L+LCY+++ A FFV
Sbjct: 387 ANYLKGLMLILCYLIVAASFFV 408



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>CAX1C_ORYSA (Q5KTQ9) Vacuolar cation/proton exchanger 1c (Ca(2+)/H(+) exchanger|
           1c) (OsCAX1c)
          Length = 450

 Score = 34.3 bits (77), Expect = 0.22
 Identities = 14/23 (60%), Positives = 17/23 (73%)
 Frame = -2

Query: 522 HYLKGVLLLLCYIVIGACFFVTR 454
           HYLKG+ L+  YIVI  CFFV +
Sbjct: 418 HYLKGLNLVFSYIVIAVCFFVMK 440



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>CAX4_ORYSA (Q6YXZ1) Putative vacuolar cation/proton exchanger 4 (Ca(2+)/H(+)|
           exchanger 4) (OsCAX4)
          Length = 447

 Score = 33.1 bits (74), Expect = 0.48
 Identities = 15/41 (36%), Positives = 25/41 (60%)
 Frame = -2

Query: 528 TSHYLKGVLLLLCYIVIGACFFVTRQTEHHANGNGTLLDVP 406
           TS+ +KG++L LCY+++ A F+V      HA+ N    + P
Sbjct: 410 TSNCVKGLMLFLCYLIVAASFYV------HADPNSKASEKP 444



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>SF01_MOUSE (Q64213) Splicing factor 1 (Zinc finger protein 162) (Transcription|
           factor ZFM1) (mZFM) (Zinc finger gene in MEN1 locus)
           (Mammalian branch point-binding protein mBBP) (BBP)
           (CW17)
          Length = 653

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 20/52 (38%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = -1

Query: 520 LPQGSPPPP--MLHCYRRLL-----LCYETNRTSRERQRHAAGCPNGSHDCP 386
           LP G+PPPP   + C   LL     LC   NR +R   R + G  + S D P
Sbjct: 577 LPPGAPPPPTCSIECLLCLLSSPNSLCLSPNRAARIPPRGSDGPSHESEDFP 628



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>CHRD_XENLA (Q91713) Chordin precursor (Organizer-specific secreted dorsalizing|
           factor)
          Length = 941

 Score = 30.0 bits (66), Expect = 4.1
 Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
 Frame = -1

Query: 517 PQGSPPPPMLHCYRRLLLCY-ETNRTSRERQRHAAGCPNGSHDCP 386
           P    P  ++HC    +LCY E  R+ R +      C N  HDCP
Sbjct: 58  PDLGEPFGVMHC----VLCYCEPQRSRRGKPSGKVSCKNIKHDCP 98



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>PPCK_NEUCR (Q7RVS9) Phosphoenolpyruvate carboxykinase [ATP] (EC 4.1.1.49)|
          Length = 561

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 11/55 (20%)
 Frame = -2

Query: 330 IENEVFEPEATKLCLSYMCIT-----------VPRKRIPCVQSPHPKESVDYCCE 199
           +EN VF PE  ++      +T           +P  +IPC+   HPK  +   C+
Sbjct: 325 LENVVFNPETREVDYGDATLTENTRCAYPIEYIPNAKIPCLSPNHPKNIILLTCD 379



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>YXX5_CAEEL (Q18179) Putative neuropeptide Y receptor (NPY-R)|
          Length = 455

 Score = 28.9 bits (63), Expect = 9.1
 Identities = 16/38 (42%), Positives = 21/38 (55%)
 Frame = +2

Query: 269 VMHIYDRHNLVASGSNTSFSILHTF*LVEAALLVISYA 382
           V HI++   LV S S T+FSI H   +  A L  + YA
Sbjct: 289 VFHIFNTFELVNSFSVTTFSICHCLAMCSACLNPLIYA 326


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 74,881,229
Number of Sequences: 219361
Number of extensions: 1553128
Number of successful extensions: 3605
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3605
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4027872870
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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