ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n16
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY108295.1| Zea mays PCO087284 mRNA sequence 66 1e-07
2ref|NM_193473.1| Oryza sativa (japonica cultivar-group), predic... 58 3e-05
3gb|AF489111.1| Oryza sativa putative Ca2+/H+ exchanger mRNA, com... 58 3e-05
4dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
5dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
6dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic D... 58 3e-05
7dbj|AB112656.1| Oryza sativa (japonica cultivar-group) OsCAX1a m... 58 3e-05
8dbj|AK100765.1| Oryza sativa (japonica cultivar-group) cDNA clon... 58 3e-05
9gb|AY133219.1| Oryza latifolia clone 78-2 pangrangja MITE elemen... 50 0.007
10gb|AY133218.1| Oryza grandiglumis clone 77-9 pangrangja MITE ele... 50 0.007
11gb|AY133216.1| Oryza alta clone 74-2 pangrangja MITE element, pa... 50 0.007
12gb|AY133214.1| Oryza alta clone 75-8 pangrangja MITE element, pa... 50 0.007
13gb|AC090699.10| Homo sapiens chromosome 17, clone RP11-794C22, c... 46 0.12
14emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 ... 44 0.46
15gb|AC133078.3| Mus musculus BAC clone RP24-444O21 from chromosom... 44 0.46
16gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosom... 44 0.46
17ref|NM_190915.1| Oryza sativa (japonica cultivar-group), predic... 42 1.8
18gb|AY133217.1| Oryza punctata clone 70-6 pangrangja MITE element... 42 1.8
19gb|AY133215.1| Oryza punctata clone 71-7 pangrangja MITE element... 42 1.8
20gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosom... 42 1.8
21gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome... 42 1.8
22ref|XM_965355.1| PREDICTED: Tribolium castaneum similar to CG352... 42 1.8
23gb|AY112735.1| Bean common mosaic virus strain NL1, complete genome 42 1.8
24gb|DQ054364.1|DQ054364S1 Bean common mosaic virus polyprotein pr... 42 1.8
25gb|U32996.1|HSMAP19 Human microtuble-associated protein-2 (MAP-2... 42 1.8
26dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic D... 42 1.8
27gb|AC004398.1|AC004398 Homo sapiens Cosmid g5129z190, complete s... 42 1.8
28dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone... 42 1.8
29ref|XM_639626.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
30ref|XM_639440.1| Dictyostelium discoideum hypothetical protein (... 40 7.2
31ref|XM_513484.1| PREDICTED: Pan troglodytes similar to dJ677H15.... 40 7.2
32ref|NM_004768.2| Homo sapiens splicing factor, arginine/serine-r... 40 7.2
33gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-... 40 7.2
34ref|XM_865151.1| PREDICTED: Bos taurus similar to FK506 binding ... 40 7.2
35ref|XM_875210.1| PREDICTED: Bos taurus similar to FK506 binding ... 40 7.2
36ref|XM_615360.2| PREDICTED: Bos taurus similar to FK506 binding ... 40 7.2
37gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete... 40 7.2
38gb|BC040436.1| Homo sapiens splicing factor, arginine/serine-ric... 40 7.2
39gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome 40 7.2
40ref|XM_596187.2| PREDICTED: Bos taurus similar to NM23-H8 (LOC51... 40 7.2
41ref|XM_872994.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
42ref|XM_872908.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
43ref|XM_872806.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
44ref|XM_872718.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
45ref|XM_591132.2| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
46ref|XM_872510.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
47ref|XM_872407.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
48ref|XM_872310.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
49ref|XM_872193.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
50ref|XM_864072.1| PREDICTED: Bos taurus similar to splicing facto... 40 7.2
51gb|BC113250.1| Bos taurus FK506 binding protein 10, 65 kDa, tran... 40 7.2
52emb|CR853302.11| Zebrafish DNA sequence from clone DKEY-91M3 in ... 40 7.2
53gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, comple... 40 7.2
54ref|XM_721459.1| Plasmodium yoelii yoelii str. 17XNL hypothetica... 40 7.2
55gb|CP000001.1| Bacillus cereus E33L, complete genome 40 7.2
56gb|BC017359.2| Homo sapiens splicing factor, arginine/serine-ric... 40 7.2
57gb|BC002784.2| Homo sapiens splicing factor, arginine/serine-ric... 40 7.2
58emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in... 40 7.2
59emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chro... 40 7.2
60emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 ... 40 7.2
61emb|BX640645.1|HSM806696 Homo sapiens mRNA; cDNA DKFZp686P22142 ... 40 7.2
62emb|CR861437.1| Pongo pygmaeus mRNA; cDNA DKFZp459L092 (from clo... 40 7.2
63emb|CR860795.1| Pongo pygmaeus mRNA; cDNA DKFZp459O216 (from clo... 40 7.2
64emb|CR860532.1| Pongo pygmaeus mRNA; cDNA DKFZp459K227 (from clo... 40 7.2
65emb|CR858906.1| Pongo pygmaeus mRNA; cDNA DKFZp459N1729 (from cl... 40 7.2
66emb|CR614713.1| full-length cDNA clone CS0DM004YH12 of Fetal liv... 40 7.2
67gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, comp... 40 7.2
68gb|AC008428.5| Homo sapiens chromosome 5 clone CTC-308D9, comple... 40 7.2
69gb|BC110179.1| Bos taurus cDNA clone MGC:133838 IMAGE:8059306, c... 40 7.2
70gb|AC024022.6| Homo sapiens BAC clone RP11-63A11 from 4, complet... 40 7.2
71gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470... 40 7.2
72emb|BX641004.1|HSM807168 Homo sapiens mRNA; cDNA DKFZp686D02116 ... 40 7.2
73emb|BX294670.6| Zebrafish DNA sequence from clone CH211-154O6 in... 40 7.2
74emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in... 40 7.2
75gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome 40 7.2
76gb|AE016879.1| Bacillus anthracis str. Ames, complete genome 40 7.2
77gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome 40 7.2
78emb|AL772403.11| Mouse DNA sequence from clone RP23-458E2 on chr... 40 7.2
79dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone... 40 7.2
80emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chro... 40 7.2
81emb|AL832279.1|HSM803586 Homo sapiens mRNA; cDNA DKFZp667E0418 (... 40 7.2
82gb|M74002.1|HUMARGNP Human arginine-rich nuclear protein mRNA, c... 40 7.2
83gb|M33757.1|NEMG12 A.lumbricoides trans-spliced mRNA encoded pro... 40 7.2 
>gb|AY108295.1| Zea mays PCO087284 mRNA sequence
          Length = 1825

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 63/73 (86%)
 Strand = Plus / Minus

                                                                        
Query: 455  ctcgtaacaaagaagcaagcgccgataacaatgtagcataggaggaggaggactcccttg 514
            ||||||||||||||||| || ||||| ||||||||||| || || || ||||  ||||||
Sbjct: 1410 ctcgtaacaaagaagcatgcaccgatcacaatgtagcacagcagcagaaggatccccttg 1351

                         
Query: 515  aggtaatgtgacg 527
            ||||| |||||||
Sbjct: 1350 aggtagtgtgacg 1338
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>ref|NM_193473.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1275

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 473  gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
            |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 1178 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 1126
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>gb|AF489111.1| Oryza sativa putative Ca2+/H+ exchanger mRNA, complete cds
          Length = 1065

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                
Query: 473 gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
           |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 929 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 877
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                     
Query: 473      gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
                |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 21068752 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 21068804



 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 192      tgcttttctcgcaacagtaatcaac 216
                ||||||||| |||||||||||||||
Sbjct: 33811225 tgcttttcttgcaacagtaatcaac 33811249
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>dbj|AP003443.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1144D11
          Length = 157943

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                  
Query: 473   gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
             |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 36297 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 36349
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>dbj|AP003372.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
              clone:OJ1014_G12
          Length = 158830

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                                   
Query: 473    gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
              |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 131954 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 132006
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>dbj|AB112656.1| Oryza sativa (japonica cultivar-group) OsCAX1a mRNA for cation/proton
            exchanger 1a, complete cds
          Length = 1895

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 473  gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
            |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 1460 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 1408
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>dbj|AK100765.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023119J24, full
            insert sequence
          Length = 1962

 Score = 58.0 bits (29), Expect = 3e-05
 Identities = 47/53 (88%)
 Strand = Plus / Minus

                                                                 
Query: 473  gcgccgataacaatgtagcataggaggaggaggactcccttgaggtaatgtga 525
            |||||||| ||||||||||| ||||||||||| |  ||||| |||||||||||
Sbjct: 1450 gcgccgatgacaatgtagcacaggaggaggagaatccccttcaggtaatgtga 1398
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>gb|AY133219.1| Oryza latifolia clone 78-2 pangrangja MITE element, partial
           sequence
          Length = 458

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           |||||||||||||||||||||||||
Sbjct: 274 tgcttttctcgcaacagtaatcaac 250
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>gb|AY133218.1| Oryza grandiglumis clone 77-9 pangrangja MITE element, partial
           sequence
          Length = 458

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           |||||||||||||||||||||||||
Sbjct: 274 tgcttttctcgcaacagtaatcaac 250
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>gb|AY133216.1| Oryza alta clone 74-2 pangrangja MITE element, partial sequence
          Length = 458

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           |||||||||||||||||||||||||
Sbjct: 274 tgcttttctcgcaacagtaatcaac 250
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>gb|AY133214.1| Oryza alta clone 75-8 pangrangja MITE element, partial sequence
          Length = 458

 Score = 50.1 bits (25), Expect = 0.007
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           |||||||||||||||||||||||||
Sbjct: 274 tgcttttctcgcaacagtaatcaac 250
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>gb|AC090699.10| Homo sapiens chromosome 17, clone RP11-794C22, complete sequence
          Length = 138379

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                         
Query: 157    tcaagaaaataaagaaaaaatctggta 183
              ||||||||| |||||||||||||||||
Sbjct: 123732 tcaagaaaaaaaagaaaaaatctggta 123706
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>emb|BX936408.10| Zebrafish DNA sequence from clone CH211-195A15 in linkage group 17,
             complete sequence
          Length = 198387

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 444   gttctgtttgtctcgtaacaaagaag 469
             ||||||||||||| ||||||||||||
Sbjct: 99432 gttctgtttgtcttgtaacaaagaag 99407
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>gb|AC133078.3| Mus musculus BAC clone RP24-444O21 from chromosome 10, complete sequence
          Length = 141420

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 162    aaaataaagaaaaaatctggta 183
              ||||||||||||||||||||||
Sbjct: 102767 aaaataaagaaaaaatctggta 102746
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>gb|AC123028.4| Mus musculus BAC clone RP24-553H21 from chromosome 10, complete sequence
          Length = 175143

 Score = 44.1 bits (22), Expect = 0.46
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 162    aaaataaagaaaaaatctggta 183
              ||||||||||||||||||||||
Sbjct: 130799 aaaataaagaaaaaatctggta 130820
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>ref|NM_190915.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1884

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           ||||||||| |||||||||||||||
Sbjct: 771 tgcttttcttgcaacagtaatcaac 747
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>gb|AY133217.1| Oryza punctata clone 70-6 pangrangja MITE element, partial sequence
          Length = 458

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           ||||||||| |||||||||||||||
Sbjct: 274 tgcttttcttgcaacagtaatcaac 250
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>gb|AY133215.1| Oryza punctata clone 71-7 pangrangja MITE element, partial sequence
          Length = 458

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 192 tgcttttctcgcaacagtaatcaac 216
           ||||||||| |||||||||||||||
Sbjct: 274 tgcttttcttgcaacagtaatcaac 250
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>gb|AC149215.3| Mus musculus BAC clone RP24-201G21 from chromosome 7, complete sequence
          Length = 174164

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 160   agaaaataaagaaaaaatctg 180
             |||||||||||||||||||||
Sbjct: 84572 agaaaataaagaaaaaatctg 84592
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>gb|AC155823.8| Mus musculus BAC clone RP23-348C5 from chromosome 8, complete sequence
          Length = 219597

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 494    aggaggaggaggactcccttg 514
              |||||||||||||||||||||
Sbjct: 152563 aggaggaggaggactcccttg 152583
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>ref|XM_965355.1| PREDICTED: Tribolium castaneum similar to CG3523-PA (LOC659016), mRNA
          Length = 6468

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 158  caagaaaataaagaaaaaatc 178
            |||||||||||||||||||||
Sbjct: 6118 caagaaaataaagaaaaaatc 6138
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>gb|AY112735.1| Bean common mosaic virus strain NL1, complete genome
          Length = 10054

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  cagttatgcacatatatgata 287
            |||||||||||||||||||||
Sbjct: 3724 cagttatgcacatatatgata 3744
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>gb|DQ054364.1|DQ054364S1 Bean common mosaic virus polyprotein precursor, gene, partial cds
          Length = 4537

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 267  cagttatgcacatatatgata 287
            |||||||||||||||||||||
Sbjct: 3078 cagttatgcacatatatgata 3098
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>gb|U32996.1|HSMAP19 Human microtuble-associated protein-2 (MAP-2) gene, exon 19
          Length = 3814

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 159  aagaaaataaagaaaaaatct 179
            |||||||||||||||||||||
Sbjct: 1449 aagaaaataaagaaaaaatct 1429
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>dbj|AP003293.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0691E06
          Length = 166497

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 192   tgcttttctcgcaacagtaatcaac 216
             ||||||||| |||||||||||||||
Sbjct: 50272 tgcttttcttgcaacagtaatcaac 50296
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>gb|AC004398.1|AC004398 Homo sapiens Cosmid g5129z190, complete sequence
          Length = 42304

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 157   tcaagaaaataaagaaaaaat 177
             |||||||||||||||||||||
Sbjct: 13445 tcaagaaaataaagaaaaaat 13425
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>dbj|AP006428.1| Lotus japonicus genomic DNA, chromosome 5, clone:LjT04J15, TM0321,
              complete sequence
          Length = 127049

 Score = 42.1 bits (21), Expect = 1.8
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 185    aattgcatgcttttctcgcaa 205
              |||||||||||||||||||||
Sbjct: 100305 aattgcatgcttttctcgcaa 100325
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>ref|XM_639626.1| Dictyostelium discoideum hypothetical protein (DDB0168059), partial
            mRNA
          Length = 6147

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  ggttcaagaaaataaagaaa 173
            ||||||||||||||||||||
Sbjct: 6063 ggttcaagaaaataaagaaa 6082
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>ref|XM_639440.1| Dictyostelium discoideum hypothetical protein (DDB0217329), partial
            mRNA
          Length = 6147

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 154  ggttcaagaaaataaagaaa 173
            ||||||||||||||||||||
Sbjct: 6063 ggttcaagaaaataaagaaa 6082
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>ref|XM_513484.1| PREDICTED: Pan troglodytes similar to dJ677H15.2 (splicing factor,
            arginine/serine-rich 11) (LOC456937), mRNA
          Length = 1961

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 981  taggaggaggaggactccct 1000
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>ref|NM_004768.2| Homo sapiens splicing factor, arginine/serine-rich 11 (SFRS11),
           mRNA
          Length = 2775

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 889 taggaggaggaggactccct 908
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>gb|AE017355.1| Bacillus thuringiensis serovar konkukian str. 97-27, complete genome
          Length = 5237682

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1579335 caagaaaataaagaaaaaat 1579354
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>ref|XM_865151.1| PREDICTED: Bos taurus similar to FK506 binding protein 10 precursor
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (65 kDa FK506-binding protein) (FKBP65)
           (Immunophilin FKBP65), transcript variant 2 (LOC535310),
           mRNA
          Length = 2726

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 catccagcagcgtgccgttg 430
           ||||||||||||||||||||
Sbjct: 711 catccagcagcgtgccgttg 692
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>ref|XM_875210.1| PREDICTED: Bos taurus similar to FK506 binding protein 10 precursor
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (65 kDa FK506-binding protein) (FKBP65)
           (Immunophilin FKBP65), transcript variant 3 (LOC535310),
           mRNA
          Length = 2726

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 catccagcagcgtgccgttg 430
           ||||||||||||||||||||
Sbjct: 711 catccagcagcgtgccgttg 692
to top
>ref|XM_615360.2| PREDICTED: Bos taurus similar to FK506 binding protein 10 precursor
           (Peptidyl-prolyl cis-trans isomerase) (PPIase)
           (Rotamase) (65 kDa FK506-binding protein) (FKBP65)
           (Immunophilin FKBP65), transcript variant 1 (LOC535310),
           mRNA
          Length = 2714

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 catccagcagcgtgccgttg 430
           ||||||||||||||||||||
Sbjct: 711 catccagcagcgtgccgttg 692
to top
>gb|AE017334.2| Bacillus anthracis str. 'Ames Ancestor', complete genome
          Length = 5227419

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1553185 caagaaaataaagaaaaaat 1553204
to top
>gb|BC040436.1| Homo sapiens splicing factor, arginine/serine-rich 11, mRNA (cDNA
           clone MGC:48837 IMAGE:5518580), complete cds
          Length = 2351

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 844 taggaggaggaggactccct 863
to top
>gb|AE017225.1| Bacillus anthracis str. Sterne, complete genome
          Length = 5228663

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1553139 caagaaaataaagaaaaaat 1553158
to top
>ref|XM_596187.2| PREDICTED: Bos taurus similar to NM23-H8 (LOC518005), mRNA
          Length = 1767

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 155 gttcaagaaaataaagaaaaaatc 178
           |||||||||| |||||||||||||
Sbjct: 508 gttcaagaaattaaagaaaaaatc 531
to top
>ref|XM_872994.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 16 (LOC513451), mRNA
          Length = 4197

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 916 taggaggaggaggactccct 935
to top
>ref|XM_872908.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
            variant 15 (LOC513451), mRNA
          Length = 4290

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 985  taggaggaggaggactccct 1004
to top
>ref|XM_872806.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 14 (LOC513451), mRNA
          Length = 4137

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 916 taggaggaggaggactccct 935
to top
>ref|XM_872718.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
            variant 13 (LOC513451), mRNA
          Length = 4909

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 1625 taggaggaggaggactccct 1644
to top
>ref|XM_591132.2| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 1 (LOC513451), mRNA
          Length = 4188

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 919 taggaggaggaggactccct 938
to top
>ref|XM_872510.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
            variant 12 (LOC513451), mRNA
          Length = 5386

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 2102 taggaggaggaggactccct 2121
to top
>ref|XM_872407.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 11 (LOC513451), mRNA
          Length = 3902

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 618 taggaggaggaggactccct 637
to top
>ref|XM_872310.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 10 (LOC513451), mRNA
          Length = 3864

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 916 taggaggaggaggactccct 935
to top
>ref|XM_872193.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
            variant 9 (LOC513451), mRNA
          Length = 5680

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 2396 taggaggaggaggactccct 2415
to top
>ref|XM_864072.1| PREDICTED: Bos taurus similar to splicing factor p54, transcript
           variant 2 (LOC513451), mRNA
          Length = 1268

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 916 taggaggaggaggactccct 935
to top
>gb|BC113250.1| Bos taurus FK506 binding protein 10, 65 kDa, transcript variant 2,
           mRNA (cDNA clone MGC:138074 IMAGE:8084218), complete cds
          Length = 2674

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 411 catccagcagcgtgccgttg 430
           ||||||||||||||||||||
Sbjct: 628 catccagcagcgtgccgttg 609
to top
>emb|CR853302.11| Zebrafish DNA sequence from clone DKEY-91M3 in linkage group 11,
             complete sequence
          Length = 231837

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 159   aagaaaataaagaaaaaatc 178
             ||||||||||||||||||||
Sbjct: 21240 aagaaaataaagaaaaaatc 21221
to top
>gb|AC114817.3| Mus musculus BAC clone RP23-28O15 from 14, complete sequence
          Length = 211624

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 162    aaaataaagaaaaaatctggtaca 185
              ||||||||||||||| ||||||||
Sbjct: 146094 aaaataaagaaaaaacctggtaca 146071
to top
>ref|XM_721459.1| Plasmodium yoelii yoelii str. 17XNL hypothetical protein (PY05985)
           partial mRNA
          Length = 586

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 157 tcaagaaaataaagaaaaaa 176
           ||||||||||||||||||||
Sbjct: 54  tcaagaaaataaagaaaaaa 73
to top
>gb|CP000001.1| Bacillus cereus E33L, complete genome
          Length = 5300915

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1577951 caagaaaataaagaaaaaat 1577970
to top
>gb|BC017359.2| Homo sapiens splicing factor, arginine/serine-rich 11, mRNA (cDNA
            clone IMAGE:5092873), partial cds
          Length = 1423

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 1006 taggaggaggaggactccct 1025
to top
>gb|BC002784.2| Homo sapiens splicing factor, arginine/serine-rich 11, mRNA (cDNA
           clone IMAGE:3615263), partial cds
          Length = 1098

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 900 taggaggaggaggactccct 919
to top
>emb|CR762396.8| Zebrafish DNA sequence from clone DKEY-262O12 in linkage group 1,
              complete sequence
          Length = 163635

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    aaaaatctggtacaattgcatgct 195
              ||||||||||||||||| ||||||
Sbjct: 124764 aaaaatctggtacaatttcatgct 124741
to top
>emb|AL353771.8| Human DNA sequence from clone RP4-677H15 on chromosome 1p31.3-32.3
             Contains gene FLJ20331, two novel genes, the SFRS11 gene
             for arginine/serine-rich 11 splicing factor and the 3' end
             of gene DKFZP566D1346, complete sequence
          Length = 131612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 493   taggaggaggaggactccct 512
             ||||||||||||||||||||
Sbjct: 97842 taggaggaggaggactccct 97861
to top
>emb|AL031684.14|HS917N8 Human DNA sequence from clone RP5-917N8 on chromosome 20p11.22-12.1
            Contains STSs and GSSs, complete sequence
          Length = 143712

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 133  aataaaaatagctagcagta 152
            ||||||||||||||||||||
Sbjct: 7035 aataaaaatagctagcagta 7054
to top
>emb|BX640645.1|HSM806696 Homo sapiens mRNA; cDNA DKFZp686P22142 (from clone DKFZp686P22142)
          Length = 4093

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 2126 taggaggaggaggactccct 2145
to top
>emb|CR861437.1| Pongo pygmaeus mRNA; cDNA DKFZp459L092 (from clone DKFZp459L092)
          Length = 3900

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 aacgcatggaattctcttcc 260
           ||||||||||||||||||||
Sbjct: 599 aacgcatggaattctcttcc 580
to top
>emb|CR860795.1| Pongo pygmaeus mRNA; cDNA DKFZp459O216 (from clone DKFZp459O216)
          Length = 3942

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 aacgcatggaattctcttcc 260
           ||||||||||||||||||||
Sbjct: 636 aacgcatggaattctcttcc 617
to top
>emb|CR860532.1| Pongo pygmaeus mRNA; cDNA DKFZp459K227 (from clone DKFZp459K227)
          Length = 3903

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 aacgcatggaattctcttcc 260
           ||||||||||||||||||||
Sbjct: 603 aacgcatggaattctcttcc 584
to top
>emb|CR858906.1| Pongo pygmaeus mRNA; cDNA DKFZp459N1729 (from clone DKFZp459N1729)
          Length = 3913

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 241 aacgcatggaattctcttcc 260
           ||||||||||||||||||||
Sbjct: 613 aacgcatggaattctcttcc 594
to top
>emb|CR614713.1| full-length cDNA clone CS0DM004YH12 of Fetal liver of Homo sapiens
           (human)
          Length = 2121

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 258 taggaggaggaggactccct 277
to top
>gb|AC091976.2| Homo sapiens chromosome 5 clone RP11-528F16, complete sequence
          Length = 175529

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 158   caagaaaataaagaaaaaat 177
             ||||||||||||||||||||
Sbjct: 46210 caagaaaataaagaaaaaat 46191
to top
>gb|AC008428.5| Homo sapiens chromosome 5 clone CTC-308D9, complete sequence
          Length = 148069

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 158  caagaaaataaagaaaaaat 177
            ||||||||||||||||||||
Sbjct: 6620 caagaaaataaagaaaaaat 6639
to top
>gb|BC110179.1| Bos taurus cDNA clone MGC:133838 IMAGE:8059306, complete cds
          Length = 1475

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 155 gttcaagaaaataaagaaaaaatc 178
           |||||||||| |||||||||||||
Sbjct: 610 gttcaagaaattaaagaaaaaatc 633
to top
>gb|AC024022.6| Homo sapiens BAC clone RP11-63A11 from 4, complete sequence
          Length = 186755

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 245    catggaattctcttccttgg 264
              ||||||||||||||||||||
Sbjct: 176461 catggaattctcttccttgg 176442
to top
>gb|AC116984.2| Dictyostelium discoideum chromosome 2 map 2567470-3108875 strain AX4,
              complete sequence
          Length = 541399

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 154    ggttcaagaaaataaagaaa 173
              ||||||||||||||||||||
Sbjct: 311782 ggttcaagaaaataaagaaa 311801
to top
>emb|BX641004.1|HSM807168 Homo sapiens mRNA; cDNA DKFZp686D02116 (from clone DKFZp686D02116)
          Length = 3272

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 309 taggaggaggaggactccct 328
to top
>emb|BX294670.6| Zebrafish DNA sequence from clone CH211-154O6 in linkage group 16,
             complete sequence
          Length = 199070

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 163   aaataaagaaaaaatctggt 182
             ||||||||||||||||||||
Sbjct: 58106 aaataaagaaaaaatctggt 58087
to top
>emb|CR391947.13| Zebrafish DNA sequence from clone DKEYP-88A4 in linkage group 1, complete
              sequence
          Length = 167207

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 172    aaaaatctggtacaattgcatgct 195
              ||||||||||||||||| ||||||
Sbjct: 144049 aaaaatctggtacaatttcatgct 144026
to top
>gb|AE016877.1| Bacillus cereus ATCC 14579, complete genome
          Length = 5411809

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1570554 caagaaaataaagaaaaaat 1570573
to top
>gb|AE016879.1| Bacillus anthracis str. Ames, complete genome
          Length = 5227293

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1553062 caagaaaataaagaaaaaat 1553081
to top
>gb|AE017194.1| Bacillus cereus ATCC 10987, complete genome
          Length = 5224283

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caagaaaataaagaaaaaat 177
               ||||||||||||||||||||
Sbjct: 1678918 caagaaaataaagaaaaaat 1678937
to top
>emb|AL772403.11| Mouse DNA sequence from clone RP23-458E2 on chromosome 4, complete
             sequence
          Length = 108612

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 158   caagaaaataaagaaaaaat 177
             ||||||||||||||||||||
Sbjct: 73584 caagaaaataaagaaaaaat 73603
to top
>dbj|AP004484.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT06I17, TM0017,
             complete sequence
          Length = 121127

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   agaaaataaagaaaaaatct 179
             ||||||||||||||||||||
Sbjct: 27022 agaaaataaagaaaaaatct 27041
to top
>emb|AL928801.6| Mouse DNA sequence from clone RP23-116P4 on chromosome 2, complete
             sequence
          Length = 132674

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 278   atatatgatagacacaattt 297
             ||||||||||||||||||||
Sbjct: 79993 atatatgatagacacaattt 80012
to top
>emb|AL832279.1|HSM803586 Homo sapiens mRNA; cDNA DKFZp667E0418 (from clone DKFZp667E0418)
          Length = 3075

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 493  taggaggaggaggactccct 512
            ||||||||||||||||||||
Sbjct: 1148 taggaggaggaggactccct 1167
to top
>gb|M74002.1|HUMARGNP Human arginine-rich nuclear protein mRNA, complete cds
          Length = 2736

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 493 taggaggaggaggactccct 512
           ||||||||||||||||||||
Sbjct: 848 taggaggaggaggactccct 867
to top
>gb|M33757.1|NEMG12 A.lumbricoides trans-spliced mRNA encoded protein gene 12, complete
           cds
          Length = 3620

 Score = 40.1 bits (20), Expect = 7.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 261 ttggcacagttatgcacata 280
           ||||||||||||||||||||
Sbjct: 99  ttggcacagttatgcacata 80


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6,017,556
Number of Sequences: 3902068
Number of extensions: 6017556
Number of successful extensions: 147940
Number of sequences better than 10.0: 83
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 147396
Number of HSP's gapped (non-prelim): 544
length of query: 529
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 506
effective length of database: 17,143,297,704
effective search space: 8674508638224
effective search space used: 8674508638224
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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