ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62c12
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_470787.1| Oryza sativa (japonica cultivar-group), mRNA 194 2e-46
2ref|XM_470786.1| Oryza sativa (japonica cultivar-group), mRNA 194 2e-46
3gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 194 2e-46
4gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genom... 194 2e-46
5dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 194 2e-46
6gb|AY107563.1| Zea mays PCO093543 mRNA sequence 86 2e-13
7ref|XM_470792.1| Oryza sativa (japonica cultivar-group), mRNA 52 0.002
8gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome 46 0.14
9dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, co... 46 0.14
10ref|XM_877373.1| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
11ref|XM_877327.1| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
12ref|XM_877276.1| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
13ref|XM_877233.1| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
14ref|XM_865861.1| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
15ref|XM_591612.2| PREDICTED: Bos taurus similar to Alpha-2-macrog... 44 0.56
16emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on ch... 44 0.56
17emb|BX001016.4| Mouse DNA sequence from clone RP23-344J1 on chro... 44 0.56
18ref|XM_470796.1| Oryza sativa (japonica cultivar-group), mRNA 42 2.2
19ref|XM_573691.1| PREDICTED: Rattus norvegicus similar to myozeni... 42 2.2
20gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, comp... 40 8.7
21ref|NM_001032932.1| Macaca mulatta aryl-hydrocarbon interacting ... 40 8.7
22ref|XM_988711.1| PREDICTED: Mus musculus zinc finger protein 167... 40 8.7
23gb|AC125374.4| Mus musculus BAC clone RP23-438P19 from chromosom... 40 8.7
24gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome 40 8.7
25gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, compl... 40 8.7
26gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56... 40 8.7
27gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56... 40 8.7
28gb|BC042569.1| Mus musculus zinc finger protein 167, mRNA (cDNA ... 40 8.7
29gb|AF296414.1|AF296414 Papio cynocephalus aryl-hydrocarbon inter... 40 8.7
30gb|AF296411.1|AF296411 Macaca mulatta aryl-hydrocarbon interacti... 40 8.7
31ref|NM_001037653.1| Rattus norvegicus far upstream element (FUSE... 40 8.7
32ref|XM_220206.3| PREDICTED: Rattus norvegicus kringle containing... 40 8.7
33dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete ... 40 8.7
34gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55... 40 8.7
35gb|AC165888.18| Mus musculus chromosome 3, clone RP24-352B14, co... 40 8.7
36gb|BC107942.1| Rattus norvegicus far upstream element (FUSE) bin... 40 8.7
37gb|AC004311.1|AC004311 Drosophila melanogaster DNA sequence (P1 ... 40 8.7
38dbj|AP001331.1| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 8.7 
>ref|XM_470787.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1481

 Score =  194 bits (98), Expect = 2e-46
 Identities = 146/162 (90%)
 Strand = Plus / Minus

                                                                        
Query: 357  gccgctgaagtttccgaccctgcggatggagccgccgatggggccttgcaggttgcagtt 416
            ||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct: 1102 gccgctgaagttggcgaccttgcggatgggggcgccgatggggccctgcaggttgcaggt 1043

                                                                        
Query: 417  gccgccgctgtcgcgcatgatggccctcatggaggtgagcaggcggccgtaggtggtgcg 476
            | |||||| |||||||||||||  |||||||| ||||||||||| ||||||||||| |||
Sbjct: 1042 gacgccgccgtcgcgcatgatgctcctcatggtggtgagcaggctgccgtaggtggcgcg 983

                                                      
Query: 477  cggctcgcactccaccgctctgatgaagctgtgcgtcatggc 518
            ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 982  cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 941
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>ref|XM_470786.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 857

 Score =  194 bits (98), Expect = 2e-46
 Identities = 146/162 (90%)
 Strand = Plus / Minus

                                                                       
Query: 357 gccgctgaagtttccgaccctgcggatggagccgccgatggggccttgcaggttgcagtt 416
           ||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct: 445 gccgctgaagttggcgaccttgcggatgggggcgccgatggggccctgcaggttgcaggt 386

                                                                       
Query: 417 gccgccgctgtcgcgcatgatggccctcatggaggtgagcaggcggccgtaggtggtgcg 476
           | |||||| |||||||||||||  |||||||| ||||||||||| ||||||||||| |||
Sbjct: 385 gacgccgccgtcgcgcatgatgctcctcatggtggtgagcaggctgccgtaggtggcgcg 326

                                                     
Query: 477 cggctcgcactccaccgctctgatgaagctgtgcgtcatggc 518
           ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 325 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 284
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  194 bits (98), Expect = 2e-46
 Identities = 146/162 (90%)
 Strand = Plus / Plus

                                                                            
Query: 357      gccgctgaagtttccgaccctgcggatggagccgccgatggggccttgcaggttgcagtt 416
                ||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct: 15369351 gccgctgaagttggcgaccttgcggatgggggcgccgatggggccctgcaggttgcaggt 15369410

                                                                            
Query: 417      gccgccgctgtcgcgcatgatggccctcatggaggtgagcaggcggccgtaggtggtgcg 476
                | |||||| |||||||||||||  |||||||| ||||||||||| ||||||||||| |||
Sbjct: 15369411 gacgccgccgtcgcgcatgatgctcctcatggtggtgagcaggctgccgtaggtggcgcg 15369470

                                                          
Query: 477      cggctcgcactccaccgctctgatgaagctgtgcgtcatggc 518
                ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 15369471 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 15369512



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 485      actccaccgctctgatgaagctgtgcgtcatggcgccgatcg 526
                |||||||||| ||||||||||||| |||||| || |||||||
Sbjct: 15401957 actccaccgccctgatgaagctgtacgtcatcgccccgatcg 15401998



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 486      ctccaccgctctgatgaagctgtgcgtcatggc 518
                |||||||||  |||||||||||| |||||||||
Sbjct: 15423404 ctccaccgccttgatgaagctgtacgtcatggc 15423436
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>gb|AC092075.7| Oryza sativa chromosome 3 BAC OSJNBa0017N12 genomic sequence, complete
              sequence
          Length = 164705

 Score =  194 bits (98), Expect = 2e-46
 Identities = 146/162 (90%)
 Strand = Plus / Minus

                                                                          
Query: 357    gccgctgaagtttccgaccctgcggatggagccgccgatggggccttgcaggttgcagtt 416
              ||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct: 132175 gccgctgaagttggcgaccttgcggatgggggcgccgatggggccctgcaggttgcaggt 132116

                                                                          
Query: 417    gccgccgctgtcgcgcatgatggccctcatggaggtgagcaggcggccgtaggtggtgcg 476
              | |||||| |||||||||||||  |||||||| ||||||||||| ||||||||||| |||
Sbjct: 132115 gacgccgccgtcgcgcatgatgctcctcatggtggtgagcaggctgccgtaggtggcgcg 132056

                                                        
Query: 477    cggctcgcactccaccgctctgatgaagctgtgcgtcatggc 518
              ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 132055 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 132014



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                       
Query: 485   actccaccgctctgatgaagctgtgcgtcatggcgccgatcg 526
             |||||||||| ||||||||||||| |||||| || |||||||
Sbjct: 99569 actccaccgccctgatgaagctgtacgtcatcgccccgatcg 99528



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                              
Query: 486   ctccaccgctctgatgaagctgtgcgtcatggc 518
             |||||||||  |||||||||||| |||||||||
Sbjct: 78122 ctccaccgccttgatgaagctgtacgtcatggc 78090
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score =  194 bits (98), Expect = 2e-46
 Identities = 146/162 (90%)
 Strand = Plus / Plus

                                                                            
Query: 357      gccgctgaagtttccgaccctgcggatggagccgccgatggggccttgcaggttgcagtt 416
                ||||||||||||  ||||| ||||||||| | ||||||||||||| |||||||||||| |
Sbjct: 15363885 gccgctgaagttggcgaccttgcggatgggggcgccgatggggccctgcaggttgcaggt 15363944

                                                                            
Query: 417      gccgccgctgtcgcgcatgatggccctcatggaggtgagcaggcggccgtaggtggtgcg 476
                | |||||| |||||||||||||  |||||||| ||||||||||| ||||||||||| |||
Sbjct: 15363945 gacgccgccgtcgcgcatgatgctcctcatggtggtgagcaggctgccgtaggtggcgcg 15364004

                                                          
Query: 477      cggctcgcactccaccgctctgatgaagctgtgcgtcatggc 518
                ||||||||||||||||||  ||||||||||||||||||||||
Sbjct: 15364005 cggctcgcactccaccgccttgatgaagctgtgcgtcatggc 15364046



 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Plus

                                                          
Query: 485      actccaccgctctgatgaagctgtgcgtcatggcgccgatcg 526
                |||||||||| ||||||||||||| |||||| || |||||||
Sbjct: 15396491 actccaccgccctgatgaagctgtacgtcatcgccccgatcg 15396532



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Plus

                                                 
Query: 486      ctccaccgctctgatgaagctgtgcgtcatggc 518
                |||||||||  |||||||||||| |||||||||
Sbjct: 15417938 ctccaccgccttgatgaagctgtacgtcatggc 15417970
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>gb|AY107563.1| Zea mays PCO093543 mRNA sequence
          Length = 995

 Score = 85.7 bits (43), Expect = 2e-13
 Identities = 159/197 (80%), Gaps = 3/197 (1%)
 Strand = Plus / Minus

                                                                       
Query: 432 catgatggccctcatggaggtgagcaggcggccgtaggtggtgc---gcggctcgcactc 488
           |||||||||  |||||||||||||||||||||||||||||   |   | |||||||| ||
Sbjct: 575 catgatggctttcatggaggtgagcaggcggccgtaggtgaccccctggggctcgcattc 516

                                                                       
Query: 489 caccgctctgatgaagctgtgcgtcatggcgccgatcgtggcgtagggctcaggcagcac 548
           ||||||  ||||||||||||| |||||||| || | ||  ||| ||| ||| |||  || 
Sbjct: 515 caccgccttgatgaagctgtgggtcatggcccccaccgccgcgcaggcctccggcgtcat 456

                                                                       
Query: 549 gctcatgttgctcttcccgttgctgctgccactgatgagcacggcctggcctccgctggt 608
           ||| |  ||||| || |||| ||||  ||| ||||| ||||| |||||||| ||||| ||
Sbjct: 455 gctgaacttgcttttgccgtcgctgtagccgctgataagcaccgcctggccgccgctcgt 396

                            
Query: 609 gcccttgcaggcgcccg 625
           |||||||||| ||||||
Sbjct: 395 gcccttgcagacgcccg 379



 Score = 42.1 bits (21), Expect = 2.2
 Identities = 33/37 (89%)
 Strand = Plus / Minus

                                                
Query: 345 aggttcctccacgccgctgaagtttccgaccctgcgg 381
           |||||||| |||||||||||||||  ||||| |||||
Sbjct: 662 aggttcctgcacgccgctgaagttgacgaccttgcgg 626
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>ref|XM_470792.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1203

 Score = 52.0 bits (26), Expect = 0.002
 Identities = 38/42 (90%)
 Strand = Plus / Minus

                                                     
Query: 485 actccaccgctctgatgaagctgtgcgtcatggcgccgatcg 526
           |||||||||| ||||||||||||| |||||| || |||||||
Sbjct: 997 actccaccgccctgatgaagctgtacgtcatcgccccgatcg 956
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>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome
          Length = 4406967

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                      
Query: 308     cgcgctcgatgtcgaacttgtac 330
               |||||||||||||||||||||||
Sbjct: 1957997 cgcgctcgatgtcgaacttgtac 1958019
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>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome
          Length = 9025608

 Score = 46.1 bits (23), Expect = 0.14
 Identities = 26/27 (96%)
 Strand = Plus / Minus

                                          
Query: 453     gagcaggcggccgtaggtggtgcgcgg 479
               ||||||||||||||| |||||||||||
Sbjct: 5654443 gagcaggcggccgtacgtggtgcgcgg 5654417
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>ref|XM_877373.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 6 (LOC513856), mRNA
          Length = 4896

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>ref|XM_877327.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 5 (LOC513856), mRNA
          Length = 4848

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>ref|XM_877276.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 4 (LOC513856), mRNA
          Length = 4923

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>ref|XM_877233.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 3 (LOC513856), mRNA
          Length = 2803

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>ref|XM_865861.1| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 2 (LOC513856), mRNA
          Length = 4911

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>ref|XM_591612.2| PREDICTED: Bos taurus similar to Alpha-2-macroglobulin precursor
            (Alpha-2-M), transcript variant 1 (LOC513856), mRNA
          Length = 5019

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 577  ccactgatgagcacggcctggc 598
            ||||||||||||||||||||||
Sbjct: 1491 ccactgatgagcacggcctggc 1512
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>emb|AL606831.17| Mouse DNA sequence from clone RP23-432M23 on chromosome 11 Contains the
              5' end of Ntn1 gene for netrin 1, three genes for a novel
              proteins (F730038I15Rik), the 3' end of a novel gene
              (4930535C22Rik) and two CpG islands, complete sequence
          Length = 221455

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 55     agtacagtggagaacaagatcc 76
              ||||||||||||||||||||||
Sbjct: 220574 agtacagtggagaacaagatcc 220595
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>emb|BX001016.4| Mouse DNA sequence from clone RP23-344J1 on chromosome 11 Contains
            the 5' end of a novel gene (4930535C22Rik) and the 5' end
            of a the gene for a novel protein, complete sequence
          Length = 8976

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 55   agtacagtggagaacaagatcc 76
            ||||||||||||||||||||||
Sbjct: 1119 agtacagtggagaacaagatcc 1140
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>ref|XM_470796.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1110

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 30/33 (90%)
 Strand = Plus / Minus

                                            
Query: 486 ctccaccgctctgatgaagctgtgcgtcatggc 518
           |||||||||  |||||||||||| |||||||||
Sbjct: 915 ctccaccgccttgatgaagctgtacgtcatggc 883
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>ref|XM_573691.1| PREDICTED: Rattus norvegicus similar to myozenin 1 (LOC498440),
           mRNA
          Length = 1394

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 592 gcctggcctccgctggtgcccttgc 616
           ||||||||||||||| |||||||||
Sbjct: 584 gcctggcctccgctgctgcccttgc 560
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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                               
Query: 453     gagcaggcggccgtaggtggtgcgcggctcgc 484
               |||||||| |||| |||||| |||||||||||
Sbjct: 4749107 gagcaggcagccgaaggtggcgcgcggctcgc 4749076
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>ref|NM_001032932.1| Macaca mulatta aryl-hydrocarbon interacting protein-like 1 (AIPL1),
           mRNA
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 ccctcatggaggtgagcagg 459
           ||||||||||||||||||||
Sbjct: 241 ccctcatggaggtgagcagg 222
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>ref|XM_988711.1| PREDICTED: Mus musculus zinc finger protein 167 (Zfp167), mRNA
          Length = 2400

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 582 gatgagcacggcctggcctc 601
           ||||||||||||||||||||
Sbjct: 694 gatgagcacggcctggcctc 713
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>gb|AC125374.4| Mus musculus BAC clone RP23-438P19 from chromosome 9, complete sequence
          Length = 175440

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 582   gatgagcacggcctggcctc 601
             ||||||||||||||||||||
Sbjct: 64353 gatgagcacggcctggcctc 64334
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>gb|CP000267.1| Rhodoferax ferrireducens DSM 15236, complete genome
          Length = 4712337

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                           
Query: 445     atggaggtgagcaggcggccgtaggtgg 472
               |||| |||| ||||||||||||||||||
Sbjct: 3642471 atggcggtgcgcaggcggccgtaggtgg 3642444
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>gb|AC104455.2| Homo sapiens chromosome 1 clone RP4-682E18, complete sequence
          Length = 125123

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 397   gggccttgcaggttgcagtt 416
             ||||||||||||||||||||
Sbjct: 15996 gggccttgcaggttgcagtt 16015
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>gb|AC099014.1| Drosophila melanogaster, chromosome 2R, region 56D-56D, BAC clone
              BACR26L01, complete sequence
          Length = 160106

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 18     acgacacgacacccaacagc 37
              ||||||||||||||||||||
Sbjct: 155288 acgacacgacacccaacagc 155269
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>gb|AC099013.1| Drosophila melanogaster, chromosome 2R, region 56D-56E, BAC clone
              BACR25K02, complete sequence
          Length = 173347

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 18     acgacacgacacccaacagc 37
              ||||||||||||||||||||
Sbjct: 122795 acgacacgacacccaacagc 122814
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>gb|BC042569.1| Mus musculus zinc finger protein 167, mRNA (cDNA clone
            IMAGE:3994925), with apparent retained intron
          Length = 3973

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 582  gatgagcacggcctggcctc 601
            ||||||||||||||||||||
Sbjct: 1348 gatgagcacggcctggcctc 1367
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>gb|AF296414.1|AF296414 Papio cynocephalus aryl-hydrocarbon interacting protein-like 1
           (Aipl1) mRNA, complete cds
          Length = 1119

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 ccctcatggaggtgagcagg 459
           ||||||||||||||||||||
Sbjct: 241 ccctcatggaggtgagcagg 222
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>gb|AF296411.1|AF296411 Macaca mulatta aryl-hydrocarbon interacting protein-like 1 (Aipl1)
           mRNA, complete cds
          Length = 1179

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 440 ccctcatggaggtgagcagg 459
           ||||||||||||||||||||
Sbjct: 241 ccctcatggaggtgagcagg 222
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>ref|NM_001037653.1| Rattus norvegicus far upstream element (FUSE) binding protein 1
            (Fubp1), mRNA
          Length = 2380

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 152  atactatag-cagcaagcagcatactat 178
            ||||||||| ||||||||||||||||||
Sbjct: 1895 atactatagacagcaagcagcatactat 1922
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>ref|XM_220206.3| PREDICTED: Rattus norvegicus kringle containing transmembrane
           protein 2 (predicted) (Kremen2_predicted), mRNA
          Length = 1284

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 559 ctcttcccgttgctgctgcc 578
           ||||||||||||||||||||
Sbjct: 34  ctcttcccgttgctgctgcc 53
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>dbj|BA000040.2| Bradyrhizobium japonicum USDA 110 DNA, complete genome
          Length = 9105828

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 307     tcgcgctcgatgtcgaacttgtac 330
               ||||| ||||||||||||||||||
Sbjct: 5269231 tcgcggtcgatgtcgaacttgtac 5269208
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>gb|AE003795.3| Drosophila melanogaster chromosome 2R, section 55 of 73 of the complete
             sequence
          Length = 248096

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    acgacacgacacccaacagc 37
             ||||||||||||||||||||
Sbjct: 41881 acgacacgacacccaacagc 41900
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>gb|AC165888.18| Mus musculus chromosome 3, clone RP24-352B14, complete sequence
          Length = 181505

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 571    ctgctgccactgatgagcac 590
              ||||||||||||||||||||
Sbjct: 116143 ctgctgccactgatgagcac 116162
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>gb|BC107942.1| Rattus norvegicus far upstream element (FUSE) binding protein 3
            (predicted), mRNA (cDNA clone MGC:125009 IMAGE:7389449),
            complete cds
          Length = 2380

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 152  atactatag-cagcaagcagcatactat 178
            ||||||||| ||||||||||||||||||
Sbjct: 1895 atactatagacagcaagcagcatactat 1922
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>gb|AC004311.1|AC004311 Drosophila melanogaster DNA sequence (P1 DS07774 (D203)), complete
             sequence
          Length = 45105

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 18    acgacacgacacccaacagc 37
             ||||||||||||||||||||
Sbjct: 27276 acgacacgacacccaacagc 27295
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>dbj|AP001331.1| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1153C10
          Length = 207620

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 41     ttacagtgaggtacagtaca 60
              ||||||||||||||||||||
Sbjct: 140948 ttacagtgaggtacagtaca 140967


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,009,021
Number of Sequences: 3902068
Number of extensions: 4009021
Number of successful extensions: 75546
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 75072
Number of HSP's gapped (non-prelim): 476
length of query: 639
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 616
effective length of database: 17,143,297,704
effective search space: 10560271385664
effective search space used: 10560271385664
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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