ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61n10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NU1M_MYTED (Q00860) NADH-ubiquinone oxidoreductase chain 1 (EC 1... 29 3.0
2AKR1_EMENI (Q5B0V6) Palmitoyltransferase akr1 (EC 2.3.1.-) (Anky... 28 8.7

>NU1M_MYTED (Q00860) NADH-ubiquinone oxidoreductase chain 1 (EC 1.6.5.3) (NADH|
           dehydrogenase subunit 1)
          Length = 305

 Score = 29.3 bits (64), Expect = 3.0
 Identities = 12/25 (48%), Positives = 17/25 (68%)
 Frame = -1

Query: 189 WEKQFFFFFCSLLVWMILWMLVRLA 115
           +++  FFFF  L V M++WML  LA
Sbjct: 171 FQQSLFFFFLPLCVVMLVWMLCMLA 195



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>AKR1_EMENI (Q5B0V6) Palmitoyltransferase akr1 (EC 2.3.1.-) (Ankyrin|
           repeat-containing protein akr1)
          Length = 737

 Score = 27.7 bits (60), Expect = 8.7
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = -1

Query: 180 QFFFFFCSLLVWMILWMLVRLAIH 109
           +FFFF+  LL++++LW+L  + ++
Sbjct: 314 KFFFFWPFLLLFVVLWILSNMVVY 337


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 24,054,308
Number of Sequences: 219361
Number of extensions: 321978
Number of successful extensions: 842
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 815
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 840
length of database: 80,573,946
effective HSP length: 39
effective length of database: 72,018,867
effective search space used: 1728452808
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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