Clone Name | rbah61n10 |
---|---|
Clone Library Name | barley_pub |
>emb|AL034554.8|HS994L9 Human DNA sequence from clone RP5-994L9 on chromosome 20p12.3-13 Contains STS and GSSs, complete sequence Length = 137739 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Minus Query: 3 gaaactggaaaagaattatca 23 ||||||||||||||||||||| Sbjct: 123889 gaaactggaaaagaattatca 123869
>emb|BX640442.1| Bordetella bronchiseptica strain RB50, complete genome; segment 6/16 Length = 349876 Score = 42.1 bits (21), Expect = 0.61 Identities = 21/21 (100%) Strand = Plus / Minus Query: 77 ccaaggcggcctccccctctc 97 ||||||||||||||||||||| Sbjct: 269659 ccaaggcggcctccccctctc 269639
>gb|AC131059.6| Mus musculus chromosome 1, clone RP24-108K12, complete sequence Length = 189961 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 128 agcatccagaggatcatcca 147 |||||||||||||||||||| Sbjct: 87000 agcatccagaggatcatcca 87019
>ref|NM_024676.3| Homo sapiens chromosome 1 open reading frame 113 (C1orf113), mRNA Length = 3182 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gccaaggcggcctccccctc 95 |||||||||||||||||||| Sbjct: 2821 gccaaggcggcctccccctc 2802
>gb|AC119846.14| Mus musculus chromosome 1, clone RP23-45A13, complete sequence Length = 242338 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 128 agcatccagaggatcatcca 147 |||||||||||||||||||| Sbjct: 216464 agcatccagaggatcatcca 216445
>emb|AL591845.27| Human DNA sequence from clone RP11-268J15 on chromosome 1 Contains the 3' end of a novel gene for thyroid hormone receptor-associated protein, 150 kDa subunit (TRAP150) (FLJ22082), a novel transcript (FLJ22938), a gene for a novel protein (FLJ10647), the 3' end of a gene for Ser/Thr-like kinase (MGC4796) and two CpG islands, complete sequence Length = 104307 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gccaaggcggcctccccctc 95 |||||||||||||||||||| Sbjct: 60761 gccaaggcggcctccccctc 60742
>ref|XM_792039.1| PREDICTED: Strongylocentrotus purpuratus similar to MASK-4E-BP3 protein (LOC592521), partial mRNA Length = 5635 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 ccggacaagcatccagagga 140 |||||||||||||||||||| Sbjct: 1588 ccggacaagcatccagagga 1607
>dbj|AK056459.1| Homo sapiens cDNA FLJ31897 fis, clone NT2RP7004080, weakly similar to CELL SURFACE GLYCOPROTEIN 1 PRECURSOR Length = 3180 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 76 gccaaggcggcctccccctc 95 |||||||||||||||||||| Sbjct: 2822 gccaaggcggcctccccctc 2803
>gb|AE017263.1| Mesoplasma florum L1 complete genome Length = 793224 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Plus Query: 3 gaaactggaaaagaattatcaat 25 ||||||||||||||||| ||||| Sbjct: 593470 gaaactggaaaagaattttcaat 593492
>ref|NG_005114.1| Homo sapiens coagulation factor VIII region (F8@) on chromosome X Length = 652898 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gaaaagaattatcaatcca 28 ||||||||||||||||||| Sbjct: 343251 gaaaagaattatcaatcca 343233
>gb|AC125106.3| Mus musculus BAC clone RP24-221A9 from chromosome 9, complete sequence Length = 159785 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 caacagtctgtgtacaggg 48 ||||||||||||||||||| Sbjct: 154134 caacagtctgtgtacaggg 154152
>gb|AC006972.2| Homo sapiens PAC clone RP4-799O8 from 7, complete sequence Length = 171537 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 aagaaactggaaaagaatt 19 ||||||||||||||||||| Sbjct: 62521 aagaaactggaaaagaatt 62539
>emb|BX293995.4| Human DNA sequence from clone RP11-143H17 on chromosome X Contains the 3' end of a novel gene (C6.1A) and a phosphatidylinositol binding clathrin assembly protein (PICALM) pseudogene, complete sequence Length = 74649 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaaaagaattatcaatcca 28 ||||||||||||||||||| Sbjct: 11274 gaaaagaattatcaatcca 11292
>gb|AC013791.9| Homo sapiens chromosome 11, clone RP11-19N21, complete sequence Length = 174569 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 ggctaaggccaaggcggcc 87 ||||||||||||||||||| Sbjct: 146068 ggctaaggccaaggcggcc 146050
>emb|BX571874.1| Photorhabdus luminescens subsp. laumondii TTO1 complete genome; segment 16/17 Length = 349907 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 16 aattatcaatccaacaaca 34 ||||||||||||||||||| Sbjct: 208705 aattatcaatccaacaaca 208723
>emb|AJ006345.1|HSA6345 Homo sapiens KVLQT1 gene Length = 404123 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ggctaaggccaaggcggcc 87 ||||||||||||||||||| Sbjct: 351240 ggctaaggccaaggcggcc 351258
>gb|AC021424.6| Homo sapiens chromosome 11, clone RP11-38L8, complete sequence Length = 181025 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 69 ggctaaggccaaggcggcc 87 ||||||||||||||||||| Sbjct: 31575 ggctaaggccaaggcggcc 31557
>gb|AC116099.2| Homo sapiens chromosome 1 clone RP11-338F23, complete sequence Length = 184007 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 1 aagaaactggaaaagaatt 19 ||||||||||||||||||| Sbjct: 63778 aagaaactggaaaagaatt 63796
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 9 ggaaaagaattatcaatcc 27 ||||||||||||||||||| Sbjct: 56137 ggaaaagaattatcaatcc 56155
>gb|AC107614.3| Homo sapiens 3 BAC RP11-719A7 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 160917 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 10 gaaaagaattatcaatcca 28 ||||||||||||||||||| Sbjct: 70188 gaaaagaattatcaatcca 70206
>gb|AC113295.5| Mus musculus chromosome 5, clone RP23-424M12, complete sequence Length = 239105 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 62 ctaggaaggctaaggccaa 80 ||||||||||||||||||| Sbjct: 61927 ctaggaaggctaaggccaa 61909
>gb|AC110556.15| Mus musculus chromosome 5, clone RP23-250G21, complete sequence Length = 214445 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 62 ctaggaaggctaaggccaa 80 ||||||||||||||||||| Sbjct: 62735 ctaggaaggctaaggccaa 62753
>gb|AC073215.5| Homo sapiens BAC clone RP11-501L9 from 2, complete sequence Length = 105392 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 9 ggaaaagaattatcaatccaaca 31 |||||| |||||||||||||||| Sbjct: 17946 ggaaaaaaattatcaatccaaca 17924
>gb|AC124156.3| Equus caballus clone CH241-280K8, complete sequence Length = 184661 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tggaaaagaattatcaatc 26 ||||||||||||||||||| Sbjct: 154213 tggaaaagaattatcaatc 154195
>dbj|AP008226.1| Thermus thermophilus HB8 genomic DNA, complete genome Length = 1849742 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aggccaaggcggcctcccc 92 ||||||||||||||||||| Sbjct: 383681 aggccaaggcggcctcccc 383663
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 38.2 bits (19), Expect = 9.5 Identities = 22/23 (95%) Strand = Plus / Minus Query: 117 ccagccggacaagcatccagagg 139 |||||||||||||||||| |||| Sbjct: 2852105 ccagccggacaagcatcccgagg 2852083
>dbj|AP006628.1| Onion yellows phytoplasma OY-M DNA, complete genome Length = 860631 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 2 agaaactggaaaagaatta 20 ||||||||||||||||||| Sbjct: 666020 agaaactggaaaagaatta 666002
>gb|AC006384.2|AC006384 Homo sapiens BAC clone RP11-557I6 from 7q11.23-q21.1, complete sequence Length = 128959 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 1 aagaaactggaaaagaatt 19 ||||||||||||||||||| Sbjct: 71346 aagaaactggaaaagaatt 71328
>gb|AC159217.3| Pan troglodytes BAC clone CH251-347C9 from chromosome unknown, complete sequence Length = 173847 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gaaaagaattatcaatcca 28 ||||||||||||||||||| Sbjct: 160959 gaaaagaattatcaatcca 160941
>emb|CT025701.10| Mouse DNA sequence from clone RP24-68C7 on chromosome 9, complete sequence Length = 120779 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 2 agaaactggaaaagaatta 20 ||||||||||||||||||| Sbjct: 109924 agaaactggaaaagaatta 109942
>gb|AY642926.1| Hordeum vulgare BAC CC24_14, complete sequence Length = 184425 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 53 cagtaggaactaggaaggc 71 ||||||||||||||||||| Sbjct: 65244 cagtaggaactaggaaggc 65262
>emb|CT573417.1| Pan troglodytes chromosome X clone PTB-001B13 map Xq28, complete sequence Length = 117521 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 10 gaaaagaattatcaatcca 28 ||||||||||||||||||| Sbjct: 79331 gaaaagaattatcaatcca 79313
>gb|AE017221.1| Thermus thermophilus HB27, complete genome Length = 1894877 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 74 aggccaaggcggcctcccc 92 ||||||||||||||||||| Sbjct: 33333 aggccaaggcggcctcccc 33315
>gb|AC003675.1|AC003675 Human Chromosome 11p15.5 P1 - 6959, complete sequence Length = 86621 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 69 ggctaaggccaaggcggcc 87 ||||||||||||||||||| Sbjct: 43297 ggctaaggccaaggcggcc 43315
>gb|AC146299.5| Mus musculus BAC clone RP23-72A20 from 9, complete sequence Length = 166132 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 30 caacagtctgtgtacaggg 48 ||||||||||||||||||| Sbjct: 87183 caacagtctgtgtacaggg 87201
>gb|DP000020.1| Equus caballus target 1 genomic scaffold Length = 1907055 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 tggaaaagaattatcaatc 26 ||||||||||||||||||| Sbjct: 816496 tggaaaagaattatcaatc 816478
>emb|AL672099.11| Mouse DNA sequence from clone RP23-379L10 on chromosome X, complete sequence Length = 181566 Score = 38.2 bits (19), Expect = 9.5 Identities = 19/19 (100%) Strand = Plus / Plus Query: 58 ggaactaggaaggctaagg 76 ||||||||||||||||||| Sbjct: 133403 ggaactaggaaggctaagg 133421 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,493,460 Number of Sequences: 3902068 Number of extensions: 1493460 Number of successful extensions: 107396 Number of sequences better than 10.0: 37 Number of HSP's better than 10.0 without gapping: 37 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 107080 Number of HSP's gapped (non-prelim): 316 length of query: 192 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 170 effective length of database: 17,147,199,772 effective search space: 2915023961240 effective search space used: 2915023961240 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)