Clone Name
rbah61n09
Clone Library Name
barley_pub
No.
Definition
Score (bits)
E Value
1 gb|BT009272.1| Triticum aestivum clone wlk8.pk0011.e10:fis, full...
904
0.0
2 ref|XM_469653.1| Oryza sativa (japonica cultivar-group), mRNA
422
e-115
3 dbj|AK061913.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
4 dbj|AK119226.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
5 dbj|AK100404.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
6 dbj|AK060674.1| Oryza sativa (japonica cultivar-group) cDNA clon...
422
e-115
7 gb|AY105738.1| Zea mays PCO070960 mRNA sequence
339
6e-90
8 gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
176
5e-41
9 gb|AC117988.3| Oryza sativa chromosome 3 BAC OSJNBa0057G07 genom...
176
5e-41
10 dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D...
176
5e-41
11 gb|AF439728.1|AF439728 Zea mays serine hydroxymethyltransferase ...
149
1e-32
12 emb|Z25860.1|FPGHMT2 Flaveria pringlei mRNA for glycine hydroxym...
101
2e-18
13 gb|M87649.1|PEASHMTA Pisum sativum serine hydroxymethyltransfera...
100
9e-18
14 emb|Z25859.1|FPGHMT1 Flaveria pringlei mRNA for glycine hydroxym...
96
1e-16
15 ref|NM_180750.1| Arabidopsis thaliana glycine hydroxymethyltrans...
88
4e-14
16 ref|NM_122560.2| Arabidopsis thaliana glycine hydroxymethyltrans...
88
4e-14
17 ref|NM_180749.2| Arabidopsis thaliana glycine hydroxymethyltrans...
88
4e-14
18 gb|BT001097.1| Arabidopsis thaliana clone C104687 (D) putative g...
88
4e-14
19 dbj|AK220785.1| Arabidopsis thaliana mRNA for glycine hydroxymet...
88
4e-14
20 emb|BX830710.1|CNS09YQU Arabidopsis thaliana Full-length cDNA Co...
88
4e-14
21 gb|BT001113.1| Arabidopsis thaliana clone C104687 (D) putative g...
88
4e-14
22 emb|Z25863.1|STGHMT S.tuberosum mRNA for glycine hydroxymethyltr...
80
9e-12
23 gb|AY035117.1| Arabidopsis thaliana putative glycine hydroxymeth...
80
9e-12
24 ref|NM_119954.2| Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYL...
64
5e-07
25 emb|AL161592.2|ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, ...
64
5e-07
26 emb|AL035538.1|ATF20D10 Arabidopsis thaliana DNA chromosome 4, B...
64
5e-07
27 emb|AJ271726.1|ATH271726 Arabidopsis thaliana mRNA for serine hy...
64
5e-07
28 gb|AY070726.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co...
64
5e-07
29 gb|AY057645.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co...
64
5e-07
30 gb|AF428388.1|AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 ...
64
5e-07
31 gb|AY054254.1| Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, co...
64
5e-07
32 gb|BT006353.1| Arabidopsis thaliana At4g37930/F20D10_50 gene, co...
64
5e-07
33 gb|AF007270.1|F2P16 Arabidopsis thaliana BAC F2P16, complete seq...
64
5e-07
34 emb|BX828432.1|CNS0A3VV Arabidopsis thaliana Full-length cDNA Co...
64
5e-07
35 gb|AY089107.1| Arabidopsis thaliana clone 33799 mRNA, complete s...
64
5e-07
36 dbj|AP004579.1| Lotus japonicus genomic DNA, chromosome 2, clone...
62
2e-06
37 dbj|AP004578.1| Lotus japonicus genomic DNA, chromosome 2, clone...
62
2e-06
38 gb|BT013569.1| Lycopersicon esculentum clone 132307R, mRNA sequence
52
0.002
39 gb|DQ139269.1| Medicago truncatula serine hydroxymethyltransfera...
52
0.002
40 gb|AF416481.1|AF416481 Cicer arietinum hydroxymethyl transferase...
46
0.12
41 gb|AC129335.4| Mus musculus BAC clone RP23-109H7 from chromosome...
44
0.48
42 gb|AC164169.8| Mus musculus 6 BAC RP23-413M4 (Roswell Park Cance...
44
0.48
43 gb|AC126010.13| Medicago truncatula clone mth2-20e4, complete se...
44
0.48
44 gb|AC153848.5| Mus musculus 6 BAC RP23-111L15 (Roswell Park Canc...
44
0.48
45 gb|AC113269.13| Mus musculus chromosome 15, clone RP23-372F2, co...
42
1.9
46 emb|AL121870.9|HSB166C10 Human DNA sequence from clone RP13-166C...
42
1.9
47 emb|AL031985.10|HS228H13 Human DNA sequence from clone RP1-228H1...
42
1.9
48 gb|AC012077.4|AC012077 Homo sapiens BAC clone RP11-524G14 from Y...
42
1.9
49 gb|AC110036.8| Mus musculus chromosome 7, clone RP23-254F9, comp...
40
7.4
50 gb|AC118627.6| Mus musculus chromosome 15, clone RP24-91E8, comp...
40
7.4
51 ref|XM_706572.1| Candida albicans SC5314 serine hydroxymethyl tr...
40
7.4
52 ref|XM_745127.1| Aspergillus fumigatus Af293 hypothetical protei...
40
7.4
53 emb|Z78199.1|CEK12F2 Caenorhabditis elegans Cosmid K12F2, comple...
40
7.4
54 gb|AC116734.14| Mus musculus chromosome 7, clone RP23-359D11, co...
40
7.4
55 gb|AC104871.8| Mus musculus chromosome 13, clone RP23-281C23, co...
40
7.4
56 emb|X08067.1|CEMYO3 Caenorhabditis elegans myo-3 gene for myosin...
40
7.4
57 gb|AC087847.6| Homo sapiens chromosome 8, clone RP11-353D5, comp...
40
7.4
58 ref|NM_073664.3| Caenorhabditis elegans MYOsin heavy chain struc...
40
7.4
59 gb|AC155267.1| Mus musculus BAC clone RP23-248M19 from chromosom...
40
7.4
60 gb|AC087798.10| Homo sapiens 12 BAC RP11-788H18 (Roswell Park Ca...
40
7.4
61 dbj|AB010698.1| Arabidopsis thaliana genomic DNA, chromosome 5, ...
40
7.4
62 gb|AF009965.1|AF009965 Candida albicans serine hydroxymethyl-tra...
40
7.4
63 gb|AC009294.8|AC009294 Homo sapiens chromosome 11, clone 579_H_1...
40
7.4
64 dbj|AP003460.3| Homo sapiens genomic DNA, chromosome 11 clone:RP...
40
7.4
65 gb|BC084962.1| Xenopus laevis hypothetical LOC495440, mRNA (cDNA...
40
7.4
66 dbj|AB002815.1| Perilla frutescens mRNA for chalcone synthase, c...
40
7.4
>gb| BT009272.1 | Triticum aestivum clone wlk8.pk0011.e10:fis, full insert mRNA
sequence
Length = 1878
Score = 904 bits (456), Expect = 0.0
Identities = 522/540 (96%), Gaps = 3/540 (0%)
Strand = Plus / Minus
Query: 11 tatagcatat-agcgaaacatcttacagtatgtgcctgcaataagaaactattgacaaag 69
|||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 1793 tatagcatatcagcgaagcatcttacagtatgtgcctgcaataagaaactatcgacaaag 1734
Query: 70 ttcccatattctgtaaaatgcttggattccttttacataagatggcgcttcatcatggat 129
||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||
Sbjct: 1733 ttcccatattctgtaaaatgcttggattccttttacatatggtggcgcttcatcatggat 1674
Query: 130 ctattgtttacatggacttgtcctcagttgtgcttcctgtttgcttcctt-gctgttgaa 188
||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||
Sbjct: 1673 ctattgtttacatggacttgtcctcagctgtgcttcttgtttgcttcctttgctgttgaa 1614
Query: 189 acacagcagtgcttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
|||||||||| ||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 1613 acacagcagttcttagttcttgtacttcatggtctccttctcgaatccaattgttgggaa 1554
Query: 249 ttgttttgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 308
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1553 ttgtttcgcatattcctccacatcgtggcgaagctttgcaatttcagcttggatgttgct 1494
Query: 309 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 368
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1493 gtcggattgcaaagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaac 1434
Query: 369 cttcaaagccaagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctc 428
|||||| |||||||||||||||||||||||||| || |||||||||||||||||||||||
Sbjct: 1433 cttcaaggccaagttcactgccgaatcgaagaagtcagcaaccttggcgaagtcctcctc 1374
Query: 429 aacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagc 488
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 1373 aacaaatcctcttgatgtaagtgcgggggttcccatcctgatgcctccgggtaccatagc 1314
Query: 489 tgaaacatcaccaggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
|||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||
Sbjct: 1313 tgaaacatcaccaggaaccgtg-ttcttgtttgctgcaatatgcacattttctaaaacct 1255
>ref| XM_469653.1 | Oryza sativa (japonica cultivar-group), mRNA
Length = 2052
Score = 422 bits (213), Expect = e-115
Identities = 316/349 (90%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1675 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1616
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1615 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1556
Query: 320 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 379
||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 1555 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1496
Query: 380 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 439
|||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1495 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1436
Query: 440 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 499
|||| || || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1435 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1376
Query: 500 caggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 1375 caggaactgtg-ttcttgtttgctgcaatgtgcacgttttctaaaacct 1328
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 1876 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1818
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 1817 aatgccaggggtcccttttacataagatggc 1787
>dbj| AK061913.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-042-A08, full
insert sequence
Length = 1402
Score = 422 bits (213), Expect = e-115
Identities = 316/349 (90%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1128 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1069
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1068 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1009
Query: 320 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 379
||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 1008 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 949
Query: 380 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 439
|||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 948 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 889
Query: 440 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 499
|||| || || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 888 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 829
Query: 500 caggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 828 caggaactgtg-ttcttgtttgctgcaatgtgcacgttttctaaaacct 781
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 1329 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1271
Query: 86 aatgcttggattcc-ttttacataagatggc 115
||||| || ||| ||||||||||||||||
Sbjct: 1270 aatgccaggggtcccttttacataagatggc 1240
>dbj| AK119226.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-100-H12, full
insert sequence
Length = 1923
Score = 422 bits (213), Expect = e-115
Identities = 316/349 (90%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1598 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1539
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1538 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1479
Query: 320 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 379
||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 1478 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1419
Query: 380 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 439
|||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1418 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1359
Query: 440 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 499
|||| || || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1358 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1299
Query: 500 caggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 1298 caggaactgtg-ttcttgtttgctgcaatgtgcacgttttctaaaacct 1251
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 1799 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1741
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 1740 aatgccaggggtcccttttacataagatggc 1710
>dbj| AK100404.1 | Oryza sativa (japonica cultivar-group) cDNA clone:J023086P20, full
insert sequence
Length = 1976
Score = 422 bits (213), Expect = e-115
Identities = 316/349 (90%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1599 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1540
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1539 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1480
Query: 320 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 379
||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 1479 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1420
Query: 380 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 439
|||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1419 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1360
Query: 440 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 499
|||| || || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1359 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1300
Query: 500 caggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 1299 caggaactgtg-ttcttgtttgctgcaatgtgcacgttttctaaaacct 1252
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 1800 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1742
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 1741 aatgccaggggtcccttttacataagatggc 1711
>dbj| AK060674.1 | Oryza sativa (japonica cultivar-group) cDNA clone:001-029-A01, full
insert sequence
Length = 1844
Score = 422 bits (213), Expect = e-115
Identities = 316/349 (90%), Gaps = 1/349 (0%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 1591 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 1532
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 1531 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 1472
Query: 320 aagtggcaacaaagtccttcagtttggtacctgctgctgcagctttaaccttcaaagcca 379
||||||||||||||||||||||||| || || |||||||||| ||||||||||||||||
Sbjct: 1471 aagtggcaacaaagtccttcagttttgttccacctgctgcagccttaaccttcaaagcca 1412
Query: 380 agttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctc 439
|||||||||| | ||||||||| || |||||||| || ||||||||||||||||||||||
Sbjct: 1411 agttcactgctgcatcgaagaaatcagcaaccttagcaaagtcctcctcaacaaatcctc 1352
Query: 440 ttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatcac 499
|||| || || || ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 1351 ttgaggtcagtgctggggttcccatcctgatgcctcctggtaccatagctgaaacatcac 1292
Query: 500 caggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||| ||||||||||||||||| ||||| |||||||||||||
Sbjct: 1291 caggaactgtg-ttcttgtttgctgcaatgtgcacgttttctaaaacct 1244
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 1792 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 1734
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 1733 aatgccaggggtcccttttacataagatggc 1703
>gb| AY105738.1 | Zea mays PCO070960 mRNA sequence
Length = 1476
Score = 339 bits (171), Expect = 6e-90
Identities = 308/351 (87%), Gaps = 7/351 (1%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcata 260
|||||||||||| ||||||||||||||||| ||||| ||||||||||||||||||||| |
Sbjct: 1231 ttagttcttgtatttcatggtctctttctcaaatccaattgttgggaattgttttgcaaa 1172
Query: 261 ttcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgcaa 320
|||||| ||||| ||||||||||||||||| ||| |||||||| || || ||||||||
Sbjct: 1171 ttcctctacatcatggcgaagctttgcaatctcaacttggatg---ctatcagattgcaa 1115
Query: 321 agtggcaacaaagtccttcagtttggt---acctgctgctgcagctttaaccttcaaagc 377
||||||||||||||||||||| || || ||||| | |||||| |||| |||||| ||
Sbjct: 1114 agtggcaacaaagtccttcagctttgttccacctgtcgttgcagccttaatcttcaaggc 1055
Query: 378 caagttcactgccgaatcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcc 437
|| |||||||| | ||||||||| || ||||| || ||||| || || |||||||||||
Sbjct: 1054 cagattcactgctgcatcgaagaagtcagcaactttagcgaaatcttcttcaacaaatcc 995
Query: 438 tcttgatgtaagcgcgggggttcccatcctgatgcctccgggtaccatagctgaaacatc 497
||| || ||||| || ||||||||||||||||||||||| || |||||||||||||||||
Sbjct: 994 tctcgacgtaagggctggggttcccatcctgatgcctcctggcaccatagctgaaacatc 935
Query: 498 accaggaactgtgtttcttgtttgctgcaatatgcacattttctaaaacct 548
||||||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct: 934 accaggaactgtg-ttcttgtttgctgcaatatgcacactttctaaaacct 885
>gb| DP000009.1 | Oryza sativa (japonica cultivar-group) chromosome 3
Length = 36102668
Score = 176 bits (89), Expect = 5e-41
Identities = 131/145 (90%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 30011320 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30011261
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 30011260 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30011201
Query: 320 aagtggcaacaaagtccttcagttt 344
|||||||||||||||||||||||||
Sbjct: 30011200 aagtggcaacaaagtccttcagttt 30011176
Score = 137 bits (69), Expect = 4e-29
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 460 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttcttgtt 519
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 30010834 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtg-ttcttgtt 30010776
Query: 520 tgctgcaatatgcacattttctaaaacct 548
||||||||| ||||| |||||||||||||
Sbjct: 30010775 tgctgcaatgtgcacgttttctaaaacct 30010747
Score = 129 bits (65), Expect = 1e-26
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 353 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 412
|||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 30011026 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30010967
Query: 413 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 461
| || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 30010966 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30010918
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 30011757 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30011699
Query: 86 aatgcttggattcc-ttttacataagatggc 115
||||| || ||| ||||||||||||||||
Sbjct: 30011698 aatgccaggggtcccttttacataagatggc 30011668
>gb| AC117988.3 | Oryza sativa chromosome 3 BAC OSJNBa0057G07 genomic sequence, complete
sequence
Length = 155106
Score = 176 bits (89), Expect = 5e-41
Identities = 131/145 (90%)
Strand = Plus / Plus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 96431 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 96490
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 96491 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 96550
Query: 320 aagtggcaacaaagtccttcagttt 344
|||||||||||||||||||||||||
Sbjct: 96551 aagtggcaacaaagtccttcagttt 96575
Score = 137 bits (69), Expect = 4e-29
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Plus
Query: 460 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttcttgtt 519
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 96917 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtg-ttcttgtt 96975
Query: 520 tgctgcaatatgcacattttctaaaacct 548
||||||||| ||||| |||||||||||||
Sbjct: 96976 tgctgcaatgtgcacgttttctaaaacct 97004
Score = 129 bits (65), Expect = 1e-26
Identities = 98/109 (89%)
Strand = Plus / Plus
Query: 353 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 412
|||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 96725 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 96784
Query: 413 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 461
| || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 96785 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 96833
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 95994 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 96052
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 96053 aatgccaggggtcccttttacataagatggc 96083
>dbj| AP008209.1 | Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
sequence
Length = 36192742
Score = 176 bits (89), Expect = 5e-41
Identities = 131/145 (90%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
|||||||||||||||||||||| |||||||| || || ||||| ||||| ||||||||||
Sbjct: 30102742 cttagttcttgtacttcatggtttctttctcaaacccaattgtggggaactgttttgcat 30102683
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatgttgctgtcggattgca 319
||||||||||||| |||||||| |||||||| || | ||| |||||||| || |||||||
Sbjct: 30102682 attcctccacatcatggcgaagttttgcaatctcggattgaatgttgctatcagattgca 30102623
Query: 320 aagtggcaacaaagtccttcagttt 344
|||||||||||||||||||||||||
Sbjct: 30102622 aagtggcaacaaagtccttcagttt 30102598
Score = 137 bits (69), Expect = 4e-29
Identities = 85/89 (95%), Gaps = 1/89 (1%)
Strand = Plus / Minus
Query: 460 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttcttgtt 519
||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 30102256 cccatcctgatgcctcctggtaccatagctgaaacatcaccaggaactgtg-ttcttgtt 30102198
Query: 520 tgctgcaatatgcacattttctaaaacct 548
||||||||| ||||| |||||||||||||
Sbjct: 30102197 tgctgcaatgtgcacgttttctaaaacct 30102169
Score = 129 bits (65), Expect = 1e-26
Identities = 98/109 (89%)
Strand = Plus / Minus
Query: 353 ctgctgcagctttaaccttcaaagccaagttcactgccgaatcgaagaattcggcaacct 412
|||||||||| |||||||||||||||||||||||||| | ||||||||| || |||||||
Sbjct: 30102448 ctgctgcagccttaaccttcaaagccaagttcactgctgcatcgaagaaatcagcaacct 30102389
Query: 413 tggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcc 461
| || |||||||||||||||||||||||||| || || || ||||||||
Sbjct: 30102388 tagcaaagtcctcctcaacaaatcctcttgaggtcagtgctggggttcc 30102340
Score = 54.0 bits (27), Expect = 5e-04
Identities = 77/91 (84%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 26 aacatcttacagtatgtgcctgcaataagaaactattgacaaagttcccatattctgtaa 85
|||||||||||||| ||| || | ||||||| |||||||||||||| ||| | ||||||
Sbjct: 30103179 aacatcttacagtaggtgtctacgataagaa-ctattgacaaagtttccacacgctgtaa 30103121
Query: 86 aatg-cttggattccttttacataagatggc 115
|||| | || | ||||||||||||||||||
Sbjct: 30103120 aatgccaggggtcccttttacataagatggc 30103090
>gb| AF439728.1 |AF439728 Zea mays serine hydroxymethyltransferase mRNA, partial cds
Length = 1028
Score = 149 bits (75), Expect = 1e-32
Identities = 91/95 (95%), Gaps = 1/95 (1%)
Strand = Plus / Minus
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||
Sbjct: 1025 ggggttcccatcctgatgcctcctggcaccatagctgaaacatcaccaggaactgtg-tt 967
Query: 514 cttgtttgctgcaatatgcacattttctaaaacct 548
|||||||||||||||||||||| ||||||||||||
Sbjct: 966 cttgtttgctgcaatatgcacactttctaaaacct 932
>emb| Z25860.1 |FPGHMT2 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
Length = 1779
Score = 101 bits (51), Expect = 2e-18
Identities = 81/91 (89%)
Strand = Plus / Minus
Query: 203 agttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatatt 262
|||| ||||| |||||||| |||||||| || |||||||||||||||||||| ||||| |
Sbjct: 1576 agtttttgtatttcatggtttctttctcaaacccgattgttgggaattgtttggcatact 1517
Query: 263 cctccacatcgtggcgaagctttgcaatttc 293
||||||| |||||||| ||||||| ||||||
Sbjct: 1516 cctccacgtcgtggcgtagctttgaaatttc 1486
Score = 65.9 bits (33), Expect = 1e-07
Identities = 78/93 (83%)
Strand = Plus / Minus
Query: 421 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 480
||||| ||||||||||| || || || || || ||||||||||| |||||||| || ||
Sbjct: 1361 tcctcttcaacaaatcccctagaagtgagagcaggggttcccattctgatgccaccagga 1302
Query: 481 accatagctgaaacatcaccaggaactgtgttt 513
||||| || || |||||||||||||| ||||||
Sbjct: 1301 accatggcagacacatcaccaggaacagtgttt 1269
>gb| M87649.1 |PEASHMTA Pisum sativum serine hydroxymethyltransferase mRNA, complete cds
Length = 1803
Score = 99.6 bits (50), Expect = 9e-18
Identities = 86/98 (87%)
Strand = Plus / Minus
Query: 416 cgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctc 475
|||| ||||||||||||||||| ||||| |||||||| || ||||||||||||||||| |
Sbjct: 1363 cgaaatcctcctcaacaaatccccttgaagtaagcgcaggagttcccatcctgatgccac 1304
Query: 476 cgggtaccatagctgaaacatcaccaggaactgtgttt 513
| || |||||||| || ||||| || ||||||||||||
Sbjct: 1303 caggaaccatagcagacacatctcctggaactgtgttt 1266
Score = 42.1 bits (21), Expect = 1.9
Identities = 54/65 (83%)
Strand = Plus / Minus
Query: 208 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 267
|||||||||||||| |||| || || || || ||||| |||||||||||| | |||||
Sbjct: 1571 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaactcctca 1512
Query: 268 acatc 272
|||||
Sbjct: 1511 acatc 1507
>emb| Z25859.1 |FPGHMT1 Flaveria pringlei mRNA for glycine hydroxymethyltransferase
Length = 1746
Score = 95.6 bits (48), Expect = 1e-16
Identities = 90/104 (86%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
||||||| ||||| |||||||| |||||||| ||||||||||| ||||||||||| || |
Sbjct: 1588 cttagtttttgtatttcatggtttctttctcaaatccgattgtcgggaattgtttcgcgt 1529
Query: 260 attcctccacatcgtggcgaagctttgcaatttcagcttggatg 303
|||||||||| || ||||| ||||||| ||||| | |||||||
Sbjct: 1528 attcctccacgtcatggcgtagctttgagatttctgattggatg 1485
Score = 73.8 bits (37), Expect = 5e-10
Identities = 91/109 (83%)
Strand = Plus / Minus
Query: 405 ggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcgggggttcccat 464
|||||| || || |||||||| ||||||||||| || || || || || |||||||||||
Sbjct: 1386 ggcaactttagcaaagtcctcttcaacaaatcccctagaggtgagagcaggggttcccat 1327
Query: 465 cctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|||||||| || || ||||| || || |||||||||||||| ||||||
Sbjct: 1326 tctgatgccaccaggaaccatggcagagacatcaccaggaacagtgttt 1278
>ref| NM_180750.1 | Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
transcript variant AT5G26780.2 mRNA, complete cds
Length = 1966
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1423 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1377
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref| NM_122560.2 | Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
transcript variant AT5G26780.3 mRNA, complete cds
Length = 2072
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1483 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1424
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1423 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1377
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1692 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1644
>ref| NM_180749.2 | Arabidopsis thaliana glycine hydroxymethyltransferase AT5G26780
transcript variant AT5G26780.1 mRNA, complete cds
Length = 1962
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1435 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1376
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1375 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1329
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1644 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1596
>gb| BT001097.1 | Arabidopsis thaliana clone C104687 (D) putative glycine
hydroxymethyltransferase (At5g26780) mRNA, complete cds
Length = 1633
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1319 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1273
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>dbj| AK220785.1 | Arabidopsis thaliana mRNA for glycine hydroxymethyltransferase
-like protein, complete cds, clone: RAFL22-26-M08
Length = 909
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 343 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 284
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 283 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 237
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 552 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 504
>emb| BX830710.1 |CNS09YQU Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTLS16ZG06 of Adult vegetative tissue of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1960
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1429 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1370
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1369 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1323
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1639 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1591
>gb| BT001113.1 | Arabidopsis thaliana clone C104687 (D) putative glycine
hydroxymethyltransferase (At5g26780) mRNA, complete cds
Length = 1633
Score = 87.7 bits (44), Expect = 4e-14
Identities = 93/108 (86%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| | |||||| ||||| |||
Sbjct: 1379 tcctcaatgaatcctcttgatgtgagggctggtgttcccatacggatgccaccgggaacc 1320
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1319 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1273
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1588 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1540
>emb| Z25863.1 |STGHMT S.tuberosum mRNA for glycine hydroxymethyltransferase
Length = 1745
Score = 79.8 bits (40), Expect = 9e-12
Identities = 82/96 (85%)
Strand = Plus / Minus
Query: 200 cttagttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcat 259
||||||| |||||||||||||| |||||||| || || ||||| ||||| || || ||||
Sbjct: 1563 cttagtttttgtacttcatggtttctttctcaaacccaattgtagggaactgcttagcat 1504
Query: 260 attcctccacatcgtggcgaagctttgcaatttcag 295
| ||||||||||| || || || |||||||||||||
Sbjct: 1503 actcctccacatcatgacggagttttgcaatttcag 1468
Score = 54.0 bits (27), Expect = 5e-04
Identities = 64/75 (85%), Gaps = 1/75 (1%)
Strand = Plus / Minus
Query: 457 gttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttctt 516
|||||||| |||||||| || || ||||| || || ||||| |||||||| ||||| |||
Sbjct: 1306 gttcccattctgatgccaccagggaccatggcagatacatctccaggaacggtgtt-ctt 1248
Query: 517 gtttgctgcaatatg 531
||| |||||||||||
Sbjct: 1247 gttggctgcaatatg 1233
>gb| AY035117.1 | Arabidopsis thaliana putative glycine hydroxymethyltransferase
(At5g26780) mRNA, complete cds
Length = 1933
Score = 79.8 bits (40), Expect = 9e-12
Identities = 92/108 (85%), Gaps = 1/108 (0%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||| |||||||||||||| || || || |||||||| |||||| ||||| |||
Sbjct: 1434 tcctcaatgaatcctcttgatgtgagggctggtgttcccatatggatgccaccgggaacc 1375
Query: 484 atagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatg 531
|| || ||||||||||||||||| || ||||||||||||||||||||
Sbjct: 1374 atggcagaaacatcaccaggaacagt-attcttgtttgctgcaatatg 1328
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 1643 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 1595
>ref| NM_119954.2 | Arabidopsis thaliana SHM1 (SERINE HYDROXYMETHYLTRANSFERASE 1);
glycine hydroxymethyltransferase AT4G37930 (SHM1) mRNA,
complete cds
Length = 1822
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1677 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1630
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1484 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1425
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1424 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1365
>emb| AL161592.2 |ATCHRIV88 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 88
Length = 198493
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 134324 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 134371
>emb| AL035538.1 |ATF20D10 Arabidopsis thaliana DNA chromosome 4, BAC clone F20D10 (ESSA project)
Length = 147215
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Plus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 19909 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 19956
>emb| AJ271726.1 |ATH271726 Arabidopsis thaliana mRNA for serine hydroxymethyl transferase (shm1
gene)
Length = 1797
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1653 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1606
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1460 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1401
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1400 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1341
>gb| AY070726.1 | Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
Length = 1775
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349
>gb| AY057645.1 | Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
Length = 1716
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1607 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1560
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1414 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1355
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1354 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1295
>gb| AF428388.1 |AF428388 Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
Length = 1730
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1608 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1561
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1415 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1356
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1355 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1296
>gb| AY054254.1 | Arabidopsis thaliana AT4g37930/F20D10_50 mRNA, complete cds
Length = 1770
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1661 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1614
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1468 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1409
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1408 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1349
>gb| BT006353.1 | Arabidopsis thaliana At4g37930/F20D10_50 gene, complete cds
Length = 1554
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1554 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1507
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1361 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1302
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1301 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1242
>gb| AF007270.1 |F2P16 Arabidopsis thaliana BAC F2P16, complete sequence
Length = 110946
Score = 63.9 bits (32), Expect = 5e-07
Identities = 57/64 (89%), Gaps = 1/64 (1%)
Strand = Plus / Minus
Query: 468 gatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttcttgtttgctgcaa 527
|||||| ||||| ||||| || ||||||||||||||||| || ||||||||||||||||
Sbjct: 22521 gatgccaccgggaaccatggcagaaacatcaccaggaacagt-attcttgtttgctgcaa 22463
Query: 528 tatg 531
||||
Sbjct: 22462 tatg 22459
Score = 50.1 bits (25), Expect = 0.008
Identities = 43/49 (87%)
Strand = Plus / Minus
Query: 215 tcatggtctctttctcgaatccgattgttgggaattgttttgcatattc 263
|||| |||||||||||||| || || ||||||||||| || ||||||||
Sbjct: 23145 tcatcgtctctttctcgaacccaatcgttgggaattgcttagcatattc 23097
>emb| BX828432.1 |CNS0A3VV Arabidopsis thaliana Full-length cDNA Complete sequence from clone
GSLTPGH89ZH08 of Hormone Treated Callus of strain col-0
of Arabidopsis thaliana (thale cress)
Length = 1771
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1650 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1603
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1457 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1398
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1397 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1338
>gb| AY089107.1 | Arabidopsis thaliana clone 33799 mRNA, complete sequence
Length = 1725
Score = 63.9 bits (32), Expect = 5e-07
Identities = 44/48 (91%)
Strand = Plus / Minus
Query: 201 ttagttcttgtacttcatggtctctttctcgaatccgattgttgggaa 248
||||||||||||||||||||| |||||||| || || |||||||||||
Sbjct: 1616 ttagttcttgtacttcatggtttctttctcaaacccaattgttgggaa 1569
Score = 56.0 bits (28), Expect = 1e-04
Identities = 97/120 (80%)
Strand = Plus / Minus
Query: 394 tcgaagaattcggcaaccttggcgaagtcctcctcaacaaatcctcttgatgtaagcgcg 453
|||||| |||| || || ||||| ||||| ||||||||||| ||||| || || || ||
Sbjct: 1423 tcgaagtattcagctactttggcaaagtcttcctcaacaaagcctctggaagtgagagca 1364
Query: 454 ggggttcccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgttt 513
|| || ||||| ||||| || || || ||||| || |||||||| |||||||| ||||||
Sbjct: 1363 ggagtacccattctgattccaccaggaaccatggcagaaacatctccaggaacagtgttt 1304
>dbj| AP004579.1 | Lotus japonicus genomic DNA, chromosome 2, clone:LjT11E23, TM0557
Length = 87695
Score = 61.9 bits (31), Expect = 2e-06
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 208 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 267
||||||||||| || | ||||| || || || ||||| || ||||| ||||| |||||
Sbjct: 7579 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 7520
Query: 268 acatcgtggcgaagctttgcaat 290
|||||||||||||||||||||||
Sbjct: 7519 acatcgtggcgaagctttgcaat 7497
>dbj| AP004578.1 | Lotus japonicus genomic DNA, chromosome 2, clone:LjT17H01, TM0541,
complete sequence
Length = 110985
Score = 61.9 bits (31), Expect = 2e-06
Identities = 70/83 (84%)
Strand = Plus / Minus
Query: 208 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctcc 267
||||||||||| || | ||||| || || || ||||| || ||||| ||||| |||||
Sbjct: 95182 ttgtacttcattgttgccttctcaaaaccaatggttggaaactgtttcgcatactcctca 95123
Query: 268 acatcgtggcgaagctttgcaat 290
|||||||||||||||||||||||
Sbjct: 95122 acatcgtggcgaagctttgcaat 95100
>gb| BT013569.1 | Lycopersicon esculentum clone 132307R, mRNA sequence
Length = 1923
Score = 52.0 bits (26), Expect = 0.002
Identities = 93/114 (81%), Gaps = 1/114 (0%)
Strand = Plus / Minus
Query: 421 tcctcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggt 480
|||||||||||||| ||||| || || || || ||||| ||||| | ||||| || |||
Sbjct: 1376 tcctcctcaacaaaacctctagaagtgagagctggggtgcccatgcgaatgccaccaggt 1317
Query: 481 accatagctgaaacatcaccaggaactgtgtttcttgtttgctgcaatatgcac 534
||||| || || ||||||||||| || || ||||| || ||||||||||||||
Sbjct: 1316 accatggcagatacatcaccaggcacagt-attcttattggctgcaatatgcac 1264
Score = 44.1 bits (22), Expect = 0.48
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 205 ttcttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcc 264
|||||||| ||||| || ||||||||||| || | || ||||||||||| ||||| |||
Sbjct: 1592 ttcttgtatttcattgtttctttctcgaaaccaacagtagggaattgtttggcatagtcc 1533
Query: 265 tc 266
||
Sbjct: 1532 tc 1531
>gb| DQ139269.1 | Medicago truncatula serine hydroxymethyltransferase mRNA, complete
cds
Length = 1524
Score = 52.0 bits (26), Expect = 0.002
Identities = 74/90 (82%)
Strand = Plus / Minus
Query: 424 tcctcaacaaatcctcttgatgtaagcgcgggggttcccatcctgatgcctccgggtacc 483
||||||||||| || || |||||||| || || |||||||| ||||| ||||| || |||
Sbjct: 1301 tcctcaacaaaacccctagatgtaagagcaggagttcccattctgatccctccaggaacc 1242
Query: 484 atagctgaaacatcaccaggaactgtgttt 513
|| || || ||||| || ||||| ||||||
Sbjct: 1241 attgcagacacatctcctggaacagtgttt 1212
>gb| AF416481.1 |AF416481 Cicer arietinum hydroxymethyl transferase mRNA, partial cds
Length = 284
Score = 46.1 bits (23), Expect = 0.12
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 208 ttgtacttcatggtctctttctcgaatccgattgttgggaattgttttgcatattcctc 266
|||||||||||||| |||| || || || || ||||| |||||||||||| |||||||
Sbjct: 68 ttgtacttcatggttgctttttcaaaaccaatggttggaaattgttttgcaaattcctc 10
>gb| AC129335.4 | Mus musculus BAC clone RP23-109H7 from chromosome 1, complete sequence
Length = 201274
Score = 44.1 bits (22), Expect = 0.48
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 362 ctttaaccttcaaagccaagtt 383
||||||||||||||||||||||
Sbjct: 32135 ctttaaccttcaaagccaagtt 32114
>gb| AC164169.8 | Mus musculus 6 BAC RP23-413M4 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 209149
Score = 44.1 bits (22), Expect = 0.48
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 ttgtgcttcctgtttgcttcct 178
||||||||||||||||||||||
Sbjct: 194735 ttgtgcttcctgtttgcttcct 194756
>gb| AC126010.13 | Medicago truncatula clone mth2-20e4, complete sequence
Length = 113964
Score = 44.1 bits (22), Expect = 0.48
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 416 cgaagtcctcctcaacaaatcctcttgatgtaag 449
|||| ||||||||||||||||| ||||| |||||
Sbjct: 58456 cgaaatcctcctcaacaaatccccttgaagtaag 58423
Score = 40.1 bits (20), Expect = 7.4
Identities = 60/72 (83%), Gaps = 1/72 (1%)
Strand = Plus / Minus
Query: 460 cccatcctgatgcctccgggtaccatagctgaaacatcaccaggaactgtgtttcttgtt 519
||||||||||| || || || |||||||| || ||||| || ||||| |||||| || ||
Sbjct: 58327 cccatcctgataccaccaggaaccatagcagacacatctcctggaacagtgttt-ttatt 58269
Query: 520 tgctgcaatatg 531
|||||||||||
Sbjct: 58268 agctgcaatatg 58257
>gb| AC153848.5 | Mus musculus 6 BAC RP23-111L15 (Roswell Park Cancer Institute (C57BL/6J
Female) Mouse BAC Library) complete sequence
Length = 187830
Score = 44.1 bits (22), Expect = 0.48
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 157 ttgtgcttcctgtttgcttcct 178
||||||||||||||||||||||
Sbjct: 54206 ttgtgcttcctgtttgcttcct 54227
>gb| AC113269.13 | Mus musculus chromosome 15, clone RP23-372F2, complete sequence
Length = 202155
Score = 42.1 bits (21), Expect = 1.9
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 160 tgcttcctgtttgcttccttgctgt 184
|||||||||||||||||| ||||||
Sbjct: 70853 tgcttcctgtttgcttccgtgctgt 70877
>emb| AL121870.9 |HSB166C10 Human DNA sequence from clone RP13-166C10 on chromosome Xq21.1-21.3,
complete sequence
Length = 122049
Score = 42.1 bits (21), Expect = 1.9
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 290 tttcagcttggatgttgctgt 310
|||||||||||||||||||||
Sbjct: 104450 tttcagcttggatgttgctgt 104470
>emb| AL031985.10 |HS228H13 Human DNA sequence from clone RP1-228H13 on chromosome 1p34.1-35.3
Contains the gene for a novel protein, a ribosomal protein
L21 (RPL21), a ribosomal protein L10a (RPL10A) and the gene
for a novel zinc finger protein, complete sequence
Length = 139737
Score = 42.1 bits (21), Expect = 1.9
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 158 tgtgcttcctgtttgcttcct 178
|||||||||||||||||||||
Sbjct: 105621 tgtgcttcctgtttgcttcct 105601
>gb| AC012077.4 |AC012077 Homo sapiens BAC clone RP11-524G14 from Y, complete sequence
Length = 209287
Score = 42.1 bits (21), Expect = 1.9
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 290 tttcagcttggatgttgctgt 310
|||||||||||||||||||||
Sbjct: 169390 tttcagcttggatgttgctgt 169410
>gb| AC110036.8 | Mus musculus chromosome 7, clone RP23-254F9, complete sequence
Length = 185681
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 455 gggttcccatcctgatgcct 474
||||||||||||||||||||
Sbjct: 170075 gggttcccatcctgatgcct 170094
>gb| AC118627.6 | Mus musculus chromosome 15, clone RP24-91E8, complete sequence
Length = 256158
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 166 ctgtttgcttccttgctgtt 185
||||||||||||||||||||
Sbjct: 85155 ctgtttgcttccttgctgtt 85174
>ref| XM_706572.1 | Candida albicans SC5314 serine hydroxymethyl transferase I
(CaO19.8922), mRNA
Length = 1482
Score = 40.1 bits (20), Expect = 7.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 486 agctgaaacatcaccaggaactgtgttt 513
|||||| |||||||||||||| ||||||
Sbjct: 1221 agctgatacatcaccaggaacggtgttt 1194
>ref| XM_745127.1 | Aspergillus fumigatus Af293 hypothetical protein (Afu1g04710)
partial mRNA
Length = 1263
Score = 40.1 bits (20), Expect = 7.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 172 gcttccttgctgttgaaacacagc 195
|||||||||| |||||||||||||
Sbjct: 35 gcttccttgcagttgaaacacagc 12
>emb| Z78199.1 |CEK12F2 Caenorhabditis elegans Cosmid K12F2, complete sequence
Length = 12999
Score = 40.1 bits (20), Expect = 7.4
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 275 ggcgaagctttgcaatttcagctt 298
|||||||||| |||||||||||||
Sbjct: 7977 ggcgaagcttggcaatttcagctt 8000
>gb| AC116734.14 | Mus musculus chromosome 7, clone RP23-359D11, complete sequence
Length = 217741
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 455 gggttcccatcctgatgcct 474
||||||||||||||||||||
Sbjct: 34173 gggttcccatcctgatgcct 34192
>gb| AC104871.8 | Mus musculus chromosome 13, clone RP23-281C23, complete sequence
Length = 165863
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 278 gaagctttgcaatttcagct 297
||||||||||||||||||||
Sbjct: 21826 gaagctttgcaatttcagct 21807
>emb| X08067.1 |CEMYO3 Caenorhabditis elegans myo-3 gene for myosin heavy chain 3 (MHC-A)
Length = 11621
Score = 40.1 bits (20), Expect = 7.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 275 ggcgaagctttgcaatttcagctt 298
|||||||||| |||||||||||||
Sbjct: 7886 ggcgaagcttggcaatttcagctt 7863
>gb| AC087847.6 | Homo sapiens chromosome 8, clone RP11-353D5, complete sequence
Length = 170722
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 205 ttcttgtacttcatggtctc 224
||||||||||||||||||||
Sbjct: 117303 ttcttgtacttcatggtctc 117322
>ref| NM_073664.3 | Caenorhabditis elegans MYOsin heavy chain structural genes family
member (myo-3) (myo-3) mRNA, complete cds
Length = 6059
Score = 40.1 bits (20), Expect = 7.4
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 275 ggcgaagctttgcaatttcagctt 298
|||||||||| |||||||||||||
Sbjct: 3565 ggcgaagcttggcaatttcagctt 3542
>gb| AC155267.1 | Mus musculus BAC clone RP23-248M19 from chromosome 13, complete
sequence
Length = 178290
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 278 gaagctttgcaatttcagct 297
||||||||||||||||||||
Sbjct: 83245 gaagctttgcaatttcagct 83226
>gb| AC087798.10 | Homo sapiens 12 BAC RP11-788H18 (Roswell Park Cancer Institute Human
BAC Library) complete sequence
Length = 160095
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 526 aatatgcacattttctaaaa 545
||||||||||||||||||||
Sbjct: 37622 aatatgcacattttctaaaa 37641
>dbj| AB010698.1 | Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MPL12
Length = 87434
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 42 tgcctgcaataagaaactat 61
||||||||||||||||||||
Sbjct: 54636 tgcctgcaataagaaactat 54617
>gb| AF009965.1 |AF009965 Candida albicans serine hydroxymethyl-transferase I (SHM1) gene,
complete cds
Length = 2260
Score = 40.1 bits (20), Expect = 7.4
Identities = 26/28 (92%)
Strand = Plus / Minus
Query: 486 agctgaaacatcaccaggaactgtgttt 513
|||||| |||||||||||||| ||||||
Sbjct: 1999 agctgatacatcaccaggaacggtgttt 1972
>gb| AC009294.8 |AC009294 Homo sapiens chromosome 11, clone 579_H_17, complete sequence
Length = 211316
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 52 aagaaactattgacaaagtt 71
||||||||||||||||||||
Sbjct: 122669 aagaaactattgacaaagtt 122650
>dbj| AP003460.3 | Homo sapiens genomic DNA, chromosome 11 clone:RP11-285P16, complete
sequence
Length = 171738
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 52 aagaaactattgacaaagtt 71
||||||||||||||||||||
Sbjct: 164989 aagaaactattgacaaagtt 165008
>gb| BC084962.1 | Xenopus laevis hypothetical LOC495440, mRNA (cDNA clone MGC:84058
IMAGE:6948237), complete cds
Length = 6578
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 348 acctgctgctgcagctttaa 367
||||||||||||||||||||
Sbjct: 240 acctgctgctgcagctttaa 221
>dbj| AB002815.1 | Perilla frutescens mRNA for chalcone synthase, complete cds
Length = 1449
Score = 40.1 bits (20), Expect = 7.4
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 339 cagtttggtacctgctgctg 358
||||||||||||||||||||
Sbjct: 1203 cagtttggtacctgctgctg 1222
Database: nt
Posted date: May 29, 2006 11:10 AM
Number of letters in database: 3,984,495,279
Number of sequences in database: 917,343
Database: /shigen/export/home/twatanab/db/nt/nt.01
Posted date: May 29, 2006 11:16 AM
Number of letters in database: 3,988,174,986
Number of sequences in database: 835,257
Database: /shigen/export/home/twatanab/db/nt/nt.02
Posted date: May 29, 2006 11:21 AM
Number of letters in database: 3,991,246,324
Number of sequences in database: 771,481
Database: /shigen/export/home/twatanab/db/nt/nt.03
Posted date: May 29, 2006 11:27 AM
Number of letters in database: 3,990,718,311
Number of sequences in database: 977,174
Database: /shigen/export/home/twatanab/db/nt/nt.04
Posted date: May 29, 2006 11:29 AM
Number of letters in database: 1,278,410,368
Number of sequences in database: 400,813
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,445,500
Number of Sequences: 3902068
Number of extensions: 5445500
Number of successful extensions: 136584
Number of sequences better than 10.0: 66
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 136315
Number of HSP's gapped (non-prelim): 229
length of query: 548
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 525
effective length of database: 17,143,297,704
effective search space: 9000231294600
effective search space used: 9000231294600
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)