ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62c08
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY104852.1| Zea mays PCO089283 mRNA sequence 88 2e-14
2dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
3dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic D... 74 3e-10
4dbj|AK121562.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
5dbj|AK065880.1| Oryza sativa (japonica cultivar-group) cDNA clon... 74 3e-10
6gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, comp... 40 4.4
7gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, co... 40 4.4
8gb|AC133496.3| Mus musculus BAC clone RP24-386G2 from chromosome... 40 4.4
9gb|AY915821.1| Schistosoma japonicum SJCHGC09749 protein mRNA, c... 40 4.4
10gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, com... 40 4.4
11emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in... 40 4.4
12gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome 40 4.4
13gb|AC158538.2| Mus musculus BAC clone RP23-2H11 from chromosome ... 40 4.4
14gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome 40 4.4
15emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chro... 40 4.4 
>gb|AY104852.1| Zea mays PCO089283 mRNA sequence
          Length = 461

 Score = 87.7 bits (44), Expect = 2e-14
 Identities = 80/92 (86%)
 Strand = Plus / Minus

                                                                       
Query: 240 ttttggagcgcctttttcgcataaatagttattgcagcagtggaaactgcagcaaccgta 299
           ||||| ||||| || || ||||||||||| || ||||||||||||  ||||||||  |||
Sbjct: 357 ttttgaagcgctttctttgcataaatagtgatagcagcagtggaagttgcagcaattgta 298

                                           
Query: 300 aagccaattccattgtagatgatctgatccac 331
           ||||| |||||||||||||| |||||||||||
Sbjct: 297 aagccgattccattgtagataatctgatccac 266
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                            
Query: 212      tcaacatagctcatcctcagcctgcaatttttggagcgcctttttcgcataaatagttat 271
                |||||| |||||||| || || || | |||||| || || || |||||||||||||||||
Sbjct: 16574364 tcaacacagctcatcatctgcttggagtttttgaagtgctttcttcgcataaatagttat 16574423

                                                                         
Query: 272      tgcagcagtggaaactgcagcaaccgtaaagccaattccattgtagatgatctgatc 328
                |||||| || |||||||||||||| |  |||||||  || ||||| || ||||||||
Sbjct: 16574424 tgcagcggtagaaactgcagcaactgagaagccaaggccgttgtaaattatctgatc 16574480
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>dbj|AP005180.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
             clone:P0003B09
          Length = 161813

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Plus

                                                                         
Query: 212   tcaacatagctcatcctcagcctgcaatttttggagcgcctttttcgcataaatagttat 271
             |||||| |||||||| || || || | |||||| || || || |||||||||||||||||
Sbjct: 64984 tcaacacagctcatcatctgcttggagtttttgaagtgctttcttcgcataaatagttat 65043

                                                                      
Query: 272   tgcagcagtggaaactgcagcaaccgtaaagccaattccattgtagatgatctgatc 328
             |||||| || |||||||||||||| |  |||||||  || ||||| || ||||||||
Sbjct: 65044 tgcagcggtagaaactgcagcaactgagaagccaaggccgttgtaaattatctgatc 65100
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>dbj|AK121562.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033034D11, full
           insert sequence
          Length = 825

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                       
Query: 212 tcaacatagctcatcctcagcctgcaatttttggagcgcctttttcgcataaatagttat 271
           |||||| |||||||| || || || | |||||| || || || |||||||||||||||||
Sbjct: 504 tcaacacagctcatcatctgcttggagtttttgaagtgctttcttcgcataaatagttat 445

                                                                    
Query: 272 tgcagcagtggaaactgcagcaaccgtaaagccaattccattgtagatgatctgatc 328
           |||||| || |||||||||||||| |  |||||||  || ||||| || ||||||||
Sbjct: 444 tgcagcggtagaaactgcagcaactgagaagccaaggccgttgtaaattatctgatc 388
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>dbj|AK065880.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013047C23, full
            insert sequence
          Length = 1483

 Score = 73.8 bits (37), Expect = 3e-10
 Identities = 97/117 (82%)
 Strand = Plus / Minus

                                                                        
Query: 212  tcaacatagctcatcctcagcctgcaatttttggagcgcctttttcgcataaatagttat 271
            |||||| |||||||| || || || | |||||| || || || |||||||||||||||||
Sbjct: 1161 tcaacacagctcatcatctgcttggagtttttgaagtgctttcttcgcataaatagttat 1102

                                                                     
Query: 272  tgcagcagtggaaactgcagcaaccgtaaagccaattccattgtagatgatctgatc 328
            |||||| || |||||||||||||| |  |||||||  || ||||| || ||||||||
Sbjct: 1101 tgcagcggtagaaactgcagcaactgagaagccaaggccgttgtaaattatctgatc 1045
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>gb|AC102656.28| Mus musculus chromosome 5, clone RP23-15G1, complete sequence
          Length = 227533

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 210    tctcaacatagctcatcctc 229
              ||||||||||||||||||||
Sbjct: 216066 tctcaacatagctcatcctc 216085
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>gb|AC109509.20| Mus musculus chromosome 14, clone RP23-16M15, complete sequence
          Length = 216410

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 100   aaacaaaaccaaaagcggtt 119
             ||||||||||||||||||||
Sbjct: 38567 aaacaaaaccaaaagcggtt 38548
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>gb|AC133496.3| Mus musculus BAC clone RP24-386G2 from chromosome 13, complete sequence
          Length = 173924

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 287   tgcagcaaccgtaaagccaa 306
             ||||||||||||||||||||
Sbjct: 14863 tgcagcaaccgtaaagccaa 14882
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>gb|AY915821.1| Schistosoma japonicum SJCHGC09749 protein mRNA, complete cds
          Length = 616

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                              
Query: 22 ttgaaatatacattgcaaag 41
          ||||||||||||||||||||
Sbjct: 20 ttgaaatatacattgcaaag 39
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>gb|AC161536.7| Mus musculus chromosome 5, clone RP23-340A18, complete sequence
          Length = 218835

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 210    tctcaacatagctcatcctc 229
              ||||||||||||||||||||
Sbjct: 100618 tctcaacatagctcatcctc 100599
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>emb|BX908806.20| Zebrafish DNA sequence from clone DKEY-43A14 in linkage group 17,
             complete sequence
          Length = 67753

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 94    tacttgaaacaaaaccaaaa 113
             ||||||||||||||||||||
Sbjct: 51915 tacttgaaacaaaaccaaaa 51934
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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 112     aagcggttgcaggttgttga 131
               ||||||||||||||||||||
Sbjct: 1397359 aagcggttgcaggttgttga 1397340
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>gb|AC158538.2| Mus musculus BAC clone RP23-2H11 from chromosome 13, complete sequence
          Length = 237313

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 287    tgcagcaaccgtaaagccaa 306
              ||||||||||||||||||||
Sbjct: 155758 tgcagcaaccgtaaagccaa 155777
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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 112    aagcggttgcaggttgttga 131
              ||||||||||||||||||||
Sbjct: 824854 aagcggttgcaggttgttga 824835
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>emb|AL844562.3| Mouse DNA sequence from clone RP23-230F7 on chromosome 2, complete
              sequence
          Length = 208058

 Score = 40.1 bits (20), Expect = 4.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 89     ctgtctacttgaaacaaaaccaaa 112
              ||||||||||||||||||| ||||
Sbjct: 153719 ctgtctacttgaaacaaaaacaaa 153696


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,043,601
Number of Sequences: 3902068
Number of extensions: 3043601
Number of successful extensions: 71050
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 70998
Number of HSP's gapped (non-prelim): 52
length of query: 333
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 311
effective length of database: 17,147,199,772
effective search space: 5332779129092
effective search space used: 5332779129092
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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