ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62c07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 ... 44 0.41
2emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in ... 44 0.41
3emb|BX322668.29| Mouse DNA sequence from clone RP23-24H2 on chro... 42 1.6
4gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome... 42 1.6
5gb|AC102672.13| Mus musculus chromosome 14, clone RP23-181E7, co... 40 6.4
6ref|XM_417692.1| PREDICTED: Gallus gallus similar to RIKEN cDNA ... 40 6.4
7gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, comp... 40 6.4
8gb|AC118456.2| Homo sapiens chromosome 5 clone CTD-2288B6, compl... 40 6.4
9emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in ... 40 6.4
10dbj|AK014593.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 6.4
11gb|AC160030.4| Mus musculus 10 BAC RP24-311K18 (Roswell Park Can... 40 6.4
12emb|BX004999.8| Zebrafish DNA sequence from clone DKEY-66I24 in ... 40 6.4
13gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I... 40 6.4
14emb|BX682227.3| Mouse DNA sequence from clone RP23-190N2 on chro... 40 6.4
15dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17,... 40 6.4
16emb|BX530725.11| Mouse DNA sequence from clone RP23-49E16 on chr... 40 6.4
17emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007 40 6.4
18emb|CR391989.15| Zebrafish DNA sequence from clone DKEY-263H23 i... 40 6.4
19emb|AL603867.7| Mouse DNA sequence from clone RP23-237G11 on chr... 40 6.4

>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25,
              complete sequence
          Length = 225139

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 103    actgcaacaaagactaaagcta 124
              ||||||||||||||||||||||
Sbjct: 129039 actgcaacaaagactaaagcta 129060



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>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25,
             complete sequence
          Length = 176023

 Score = 44.1 bits (22), Expect = 0.41
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 103   actgcaacaaagactaaagcta 124
             ||||||||||||||||||||||
Sbjct: 94108 actgcaacaaagactaaagcta 94087



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>emb|BX322668.29| Mouse DNA sequence from clone RP23-24H2 on chromosome X, complete
             sequence
          Length = 173538

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 150   tgggtttgtgaatgctggttt 170
             |||||||||||||||||||||
Sbjct: 99060 tgggtttgtgaatgctggttt 99080



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>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete
             sequence
          Length = 196773

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 150   tgggtttgtgaatgctggttt 170
             |||||||||||||||||||||
Sbjct: 52649 tgggtttgtgaatgctggttt 52629



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>gb|AC102672.13| Mus musculus chromosome 14, clone RP23-181E7, complete sequence
          Length = 208396

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 224    ctcatcatctcaggcaacat 243
              ||||||||||||||||||||
Sbjct: 108278 ctcatcatctcaggcaacat 108297



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>ref|XM_417692.1| PREDICTED: Gallus gallus similar to RIKEN cDNA D430024F16 gene
            (LOC419541), mRNA
          Length = 1935

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 149  atgggtttgtgaatgctggtttct 172
            ||||| ||||||||||||||||||
Sbjct: 1154 atgggcttgtgaatgctggtttct 1177



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>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence
          Length = 242745

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 146   gacatgggtttgtgaatgct 165
             ||||||||||||||||||||
Sbjct: 91723 gacatgggtttgtgaatgct 91742



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>gb|AC118456.2| Homo sapiens chromosome 5 clone CTD-2288B6, complete sequence
          Length = 121822

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 435   ttgcatgctgtgcagatcttcatt 458
             ||||| ||||||||||||||||||
Sbjct: 78742 ttgcaggctgtgcagatcttcatt 78765



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>emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in linkage group 3,
             complete sequence
          Length = 174108

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ccagcttcagtacattagcc 377
             ||||||||||||||||||||
Sbjct: 92870 ccagcttcagtacattagcc 92851



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>dbj|AK014593.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4632426C10 product:unclassifiable, full
            insert sequence
          Length = 2795

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 100  agaactgcaacaaagactaa 119
            ||||||||||||||||||||
Sbjct: 2682 agaactgcaacaaagactaa 2663



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>gb|AC160030.4| Mus musculus 10 BAC RP24-311K18 (Roswell Park Cancer Institute
             (C57BL/6J Male) Mouse BAC Library) complete sequence
          Length = 162351

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 355   tctccagcttcagtacatta 374
             ||||||||||||||||||||
Sbjct: 66708 tctccagcttcagtacatta 66689



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>emb|BX004999.8| Zebrafish DNA sequence from clone DKEY-66I24 in linkage group 3,
             complete sequence
          Length = 168839

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 358   ccagcttcagtacattagcc 377
             ||||||||||||||||||||
Sbjct: 79188 ccagcttcagtacattagcc 79169



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>gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I22 map21q11.2, complete
             sequence
          Length = 149684

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   acatgggtttgtgaatgctg 166
             ||||||||||||||||||||
Sbjct: 57567 acatgggtttgtgaatgctg 57548



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>emb|BX682227.3| Mouse DNA sequence from clone RP23-190N2 on chromosome X, complete
             sequence
          Length = 76641

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 409   agaccttctggctgttgaca 428
             ||||||||||||||||||||
Sbjct: 26816 agaccttctggctgttgaca 26797



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>dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17, map 22, complete
              sequences
          Length = 191345

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 147    acatgggtttgtgaatgctg 166
              ||||||||||||||||||||
Sbjct: 118277 acatgggtttgtgaatgctg 118258



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>emb|BX530725.11| Mouse DNA sequence from clone RP23-49E16 on chromosome 4, complete
             sequence
          Length = 80674

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 100   agaactgcaacaaagactaa 119
             ||||||||||||||||||||
Sbjct: 22776 agaactgcaacaaagactaa 22795



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>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007
          Length = 340000

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 147   acatgggtttgtgaatgctg 166
             ||||||||||||||||||||
Sbjct: 93732 acatgggtttgtgaatgctg 93713



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>emb|CR391989.15| Zebrafish DNA sequence from clone DKEY-263H23 in linkage group 19,
            complete sequence
          Length = 154561

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 148  catgggtttgtgaatgctgg 167
            ||||||||||||||||||||
Sbjct: 7593 catgggtttgtgaatgctgg 7574



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>emb|AL603867.7| Mouse DNA sequence from clone RP23-237G11 on chromosome 15, complete
             sequence
          Length = 112729

 Score = 40.1 bits (20), Expect = 6.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 410   gaccttctggctgttgacaa 429
             ||||||||||||||||||||
Sbjct: 32335 gaccttctggctgttgacaa 32316


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,877,280
Number of Sequences: 3902068
Number of extensions: 2877280
Number of successful extensions: 49820
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 49793
Number of HSP's gapped (non-prelim): 27
length of query: 473
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 451
effective length of database: 17,147,199,772
effective search space: 7733387097172
effective search space used: 7733387097172
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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