Clone Name | rbah62c07 |
---|---|
Clone Library Name | barley_pub |
>emb|CR354535.11| Zebrafish DNA sequence from clone CH211-199M16 in linkage group 25, complete sequence Length = 225139 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Plus Query: 103 actgcaacaaagactaaagcta 124 |||||||||||||||||||||| Sbjct: 129039 actgcaacaaagactaaagcta 129060
>emb|BX294110.8| Zebrafish DNA sequence from clone DKEYP-19H3 in linkage group 25, complete sequence Length = 176023 Score = 44.1 bits (22), Expect = 0.41 Identities = 22/22 (100%) Strand = Plus / Minus Query: 103 actgcaacaaagactaaagcta 124 |||||||||||||||||||||| Sbjct: 94108 actgcaacaaagactaaagcta 94087
>emb|BX322668.29| Mouse DNA sequence from clone RP23-24H2 on chromosome X, complete sequence Length = 173538 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Plus Query: 150 tgggtttgtgaatgctggttt 170 ||||||||||||||||||||| Sbjct: 99060 tgggtttgtgaatgctggttt 99080
>gb|AC131682.4| Mus musculus BAC clone RP23-355L3 from chromosome unknown, complete sequence Length = 196773 Score = 42.1 bits (21), Expect = 1.6 Identities = 21/21 (100%) Strand = Plus / Minus Query: 150 tgggtttgtgaatgctggttt 170 ||||||||||||||||||||| Sbjct: 52649 tgggtttgtgaatgctggttt 52629
>gb|AC102672.13| Mus musculus chromosome 14, clone RP23-181E7, complete sequence Length = 208396 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 224 ctcatcatctcaggcaacat 243 |||||||||||||||||||| Sbjct: 108278 ctcatcatctcaggcaacat 108297
>ref|XM_417692.1| PREDICTED: Gallus gallus similar to RIKEN cDNA D430024F16 gene (LOC419541), mRNA Length = 1935 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 149 atgggtttgtgaatgctggtttct 172 ||||| |||||||||||||||||| Sbjct: 1154 atgggcttgtgaatgctggtttct 1177
>gb|AC114995.7| Mus musculus chromosome 8, clone RP23-171P5, complete sequence Length = 242745 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 gacatgggtttgtgaatgct 165 |||||||||||||||||||| Sbjct: 91723 gacatgggtttgtgaatgct 91742
>gb|AC118456.2| Homo sapiens chromosome 5 clone CTD-2288B6, complete sequence Length = 121822 Score = 40.1 bits (20), Expect = 6.4 Identities = 23/24 (95%) Strand = Plus / Plus Query: 435 ttgcatgctgtgcagatcttcatt 458 ||||| |||||||||||||||||| Sbjct: 78742 ttgcaggctgtgcagatcttcatt 78765
>emb|BX323078.8| Zebrafish DNA sequence from clone DKEYP-55A5 in linkage group 3, complete sequence Length = 174108 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ccagcttcagtacattagcc 377 |||||||||||||||||||| Sbjct: 92870 ccagcttcagtacattagcc 92851
>dbj|AK014593.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched library, clone:4632426C10 product:unclassifiable, full insert sequence Length = 2795 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 100 agaactgcaacaaagactaa 119 |||||||||||||||||||| Sbjct: 2682 agaactgcaacaaagactaa 2663
>gb|AC160030.4| Mus musculus 10 BAC RP24-311K18 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 162351 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 355 tctccagcttcagtacatta 374 |||||||||||||||||||| Sbjct: 66708 tctccagcttcagtacatta 66689
>emb|BX004999.8| Zebrafish DNA sequence from clone DKEY-66I24 in linkage group 3, complete sequence Length = 168839 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 ccagcttcagtacattagcc 377 |||||||||||||||||||| Sbjct: 79188 ccagcttcagtacattagcc 79169
>gb|AF127936.2|AF127936 Homo sapiens chromosome 21 clone PAC 153I22 map21q11.2, complete sequence Length = 149684 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 acatgggtttgtgaatgctg 166 |||||||||||||||||||| Sbjct: 57567 acatgggtttgtgaatgctg 57548
>emb|BX682227.3| Mouse DNA sequence from clone RP23-190N2 on chromosome X, complete sequence Length = 76641 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 409 agaccttctggctgttgaca 428 |||||||||||||||||||| Sbjct: 26816 agaccttctggctgttgaca 26797
>dbj|BS000011.1| Pan troglodytes chromosome 22 clone:RP43-017I17, map 22, complete sequences Length = 191345 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 acatgggtttgtgaatgctg 166 |||||||||||||||||||| Sbjct: 118277 acatgggtttgtgaatgctg 118258
>emb|BX530725.11| Mouse DNA sequence from clone RP23-49E16 on chromosome 4, complete sequence Length = 80674 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 100 agaactgcaacaaagactaa 119 |||||||||||||||||||| Sbjct: 22776 agaactgcaacaaagactaa 22795
>emb|AL163207.2|HS21C007 Homo sapiens chromosome 21 segment HS21C007 Length = 340000 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 147 acatgggtttgtgaatgctg 166 |||||||||||||||||||| Sbjct: 93732 acatgggtttgtgaatgctg 93713
>emb|CR391989.15| Zebrafish DNA sequence from clone DKEY-263H23 in linkage group 19, complete sequence Length = 154561 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 catgggtttgtgaatgctgg 167 |||||||||||||||||||| Sbjct: 7593 catgggtttgtgaatgctgg 7574
>emb|AL603867.7| Mouse DNA sequence from clone RP23-237G11 on chromosome 15, complete sequence Length = 112729 Score = 40.1 bits (20), Expect = 6.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 410 gaccttctggctgttgacaa 429 |||||||||||||||||||| Sbjct: 32335 gaccttctggctgttgacaa 32316 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,877,280 Number of Sequences: 3902068 Number of extensions: 2877280 Number of successful extensions: 49820 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 19 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49793 Number of HSP's gapped (non-prelim): 27 length of query: 473 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 451 effective length of database: 17,147,199,772 effective search space: 7733387097172 effective search space used: 7733387097172 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)