Clone Name | rbah61n07 |
---|---|
Clone Library Name | barley_pub |
>NECD_MOUSE (P25233) Necdin| Length = 325 Score = 32.7 bits (73), Expect = 0.66 Identities = 18/44 (40%), Positives = 25/44 (56%) Frame = +2 Query: 65 DRQRIGIPTKPPAFILQHLQQPPVPCSLQGPSRKQRAFPGPDHR 196 D +GIP PPA + +L PP C+ +GP Q+A P P+ R Sbjct: 26 DAVPVGIP--PPASLAANLAGPP--CAPEGPMAAQQASPPPEER 65
>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%) Frame = -3 Query: 263 EEPVPHIPLLRCILRF---YSHTEIGGGLAQEMHVVSCLGLV 147 + P+ PL++ L F Y TE+G G+ E +V C+ L+ Sbjct: 283 QHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLI 324
>PANB_RHOPA (Q6N583) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC| 2.1.2.11) (Ketopantoate hydroxymethyltransferase) Length = 274 Score = 30.4 bits (67), Expect = 3.3 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%) Frame = +2 Query: 77 IGIPTKPPAFILQHLQQPP-VPCSLQGPSR--KQRAFPGPDH 193 +G+ KPP F+ ++ P + +++G + + RAFPGP+H Sbjct: 225 LGLSPKPPKFVKRYGDLGPGIEAAIKGYAEEVRSRAFPGPEH 266
>TRI56_MOUSE (Q80VI1) Tripartite motif protein 56| Length = 734 Score = 29.6 bits (65), Expect = 5.6 Identities = 17/43 (39%), Positives = 22/43 (51%) Frame = -2 Query: 183 PGNARCFLLGPCNEQGTGGCCKCCRIKAGGFVGMPILCLSHVV 55 PG A CFL PC++ CK CR+ G + P L L+ V Sbjct: 173 PGEALCFLCQPCSQL----LCKDCRL--GPHIDHPCLPLAEAV 209
>VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 precursor| (CRISP-90) Length = 687 Score = 29.3 bits (64), Expect = 7.3 Identities = 15/58 (25%), Positives = 22/58 (37%) Frame = -2 Query: 270 TLGGACSTYSFAPVYS*VLLAHRDWRWSGPGNARCFLLGPCNEQGTGGCCKCCRIKAG 97 T C+T S A + + + PG +C N G GC +C + AG Sbjct: 356 TCADNCATCSEATTEDKCKICKAGFFLASPGEGKCISCSDTNNGGIDGCAECTKEPAG 413
>CYSP2_DICDI (P04989) Cysteine proteinase 2 precursor (EC 3.4.22.-) (Prestalk| cathepsin) Length = 376 Score = 29.3 bits (64), Expect = 7.3 Identities = 14/28 (50%), Positives = 16/28 (57%) Frame = -2 Query: 534 VESSSDSDDNAETTANKEWKVLESLGTA 451 VESS DS D+ AN W V S GT+ Sbjct: 321 VESSDDSSDSVRPKANNYWIVKNSWGTS 348
>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)| Length = 975 Score = 28.9 bits (63), Expect = 9.5 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%) Frame = -3 Query: 263 EEPVPHIPLLRCILRF---YSHTEIGGGLAQEMHVVSCLGLV 147 + P PL++ L F Y TE+G G+ E +V C+ L+ Sbjct: 283 QHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLI 324
>STCJ_EMENI (Q00681) Putative sterigmatocystin biosynthesis fatty acid synthase| alpha subunit Length = 1559 Score = 28.9 bits (63), Expect = 9.5 Identities = 13/33 (39%), Positives = 20/33 (60%) Frame = -2 Query: 420 LKPSENSAFVRVKPIIGSGEEQARGFVPYKRCR 322 L+P E++ F R+K + +EQARG P + R Sbjct: 1088 LQPEESAGFARMKATVSVRDEQARGREPGEMSR 1120
>ENV_SIVV1 (P27757) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 768 Score = 28.9 bits (63), Expect = 9.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 153 AQAGNNVHFLGQTTANLCVRVKP 221 AQAG+N+H L + T CV++ P Sbjct: 86 AQAGSNIHLLFEQTLKPCVKLSP 108
>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)| Length = 1045 Score = 28.9 bits (63), Expect = 9.5 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Frame = -2 Query: 531 ESSSDSDDNAETTANKEWKVLESLGTAQVPRSASSFQLKPSENSAFV-RVKPIIGSGEEQ 355 E S S ++++ T K VLE L P+S ++F+ + SE S V + + EE+ Sbjct: 42 EGSEVSYNSSQETYPKSTVVLEDLSLGSAPQSPTNFKPQQSEKSNVVDNHETDLKRLEEE 101 Query: 354 ARGFVPYKRCRV 319 A V + CR+ Sbjct: 102 AHITVIQQLCRI 113
>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior| membrane glycoprotein (GP120); Transmembrane glycoprotein (GP41)] Length = 877 Score = 28.9 bits (63), Expect = 9.5 Identities = 11/23 (47%), Positives = 16/23 (69%) Frame = +3 Query: 153 AQAGNNVHFLGQTTANLCVRVKP 221 AQAG+N+H L + T CV++ P Sbjct: 85 AQAGSNIHLLFEQTLKPCVKLSP 107 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 77,604,811 Number of Sequences: 219361 Number of extensions: 1681908 Number of successful extensions: 4192 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 4031 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4190 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4200495993 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)