>NECD_MOUSE (P25233) Necdin|
          Length = 325

 Score = 32.7 bits (73), Expect = 0.66
 Identities = 18/44 (40%), Positives = 25/44 (56%)
 Frame = +2

Query: 65  DRQRIGIPTKPPAFILQHLQQPPVPCSLQGPSRKQRAFPGPDHR 196
           D   +GIP  PPA +  +L  PP  C+ +GP   Q+A P P+ R
Sbjct: 26  DAVPVGIP--PPASLAANLAGPP--CAPEGPMAAQQASPPPEER 65

>IPO11_MOUSE (Q8K2V6) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)|
          Length = 975

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/42 (33%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -3

Query: 263 EEPVPHIPLLRCILRF---YSHTEIGGGLAQEMHVVSCLGLV 147
           + P+   PL++  L F   Y  TE+G G+  E  +V C+ L+
Sbjct: 283 QHPISFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLI 324

>PANB_RHOPA (Q6N583) 3-methyl-2-oxobutanoate hydroxymethyltransferase (EC|
           2.1.2.11) (Ketopantoate hydroxymethyltransferase)
          Length = 274

 Score = 30.4 bits (67), Expect = 3.3
 Identities = 14/42 (33%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +2

Query: 77  IGIPTKPPAFILQHLQQPP-VPCSLQGPSR--KQRAFPGPDH 193
           +G+  KPP F+ ++    P +  +++G +   + RAFPGP+H
Sbjct: 225 LGLSPKPPKFVKRYGDLGPGIEAAIKGYAEEVRSRAFPGPEH 266

>TRI56_MOUSE (Q80VI1) Tripartite motif protein 56|
          Length = 734

 Score = 29.6 bits (65), Expect = 5.6
 Identities = 17/43 (39%), Positives = 22/43 (51%)
 Frame = -2

Query: 183 PGNARCFLLGPCNEQGTGGCCKCCRIKAGGFVGMPILCLSHVV 55
           PG A CFL  PC++      CK CR+  G  +  P L L+  V
Sbjct: 173 PGEALCFLCQPCSQL----LCKDCRL--GPHIDHPCLPLAEAV 209

>VS41_GIALA (P92127) Variant-specific surface protein VSP4A1 precursor|
           (CRISP-90)
          Length = 687

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 15/58 (25%), Positives = 22/58 (37%)
 Frame = -2

Query: 270 TLGGACSTYSFAPVYS*VLLAHRDWRWSGPGNARCFLLGPCNEQGTGGCCKCCRIKAG 97
           T    C+T S A       +    +  + PG  +C      N  G  GC +C +  AG
Sbjct: 356 TCADNCATCSEATTEDKCKICKAGFFLASPGEGKCISCSDTNNGGIDGCAECTKEPAG 413

>CYSP2_DICDI (P04989) Cysteine proteinase 2 precursor (EC 3.4.22.-) (Prestalk|
           cathepsin)
          Length = 376

 Score = 29.3 bits (64), Expect = 7.3
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = -2

Query: 534 VESSSDSDDNAETTANKEWKVLESLGTA 451
           VESS DS D+    AN  W V  S GT+
Sbjct: 321 VESSDDSSDSVRPKANNYWIVKNSWGTS 348

>IPO11_HUMAN (Q9UI26) Importin-11 (Imp11) (Ran-binding protein 11) (RanBP11)|
          Length = 975

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 14/42 (33%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
 Frame = -3

Query: 263 EEPVPHIPLLRCILRF---YSHTEIGGGLAQEMHVVSCLGLV 147
           + P    PL++  L F   Y  TE+G G+  E  +V C+ L+
Sbjct: 283 QHPFSFTPLIQRSLEFSVSYVFTEVGEGVTFERFIVQCMNLI 324

>STCJ_EMENI (Q00681) Putative sterigmatocystin biosynthesis fatty acid synthase|
            alpha subunit
          Length = 1559

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 420  LKPSENSAFVRVKPIIGSGEEQARGFVPYKRCR 322
            L+P E++ F R+K  +   +EQARG  P +  R
Sbjct: 1088 LQPEESAGFARMKATVSVRDEQARGREPGEMSR 1120

>ENV_SIVV1 (P27757) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 768

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 153 AQAGNNVHFLGQTTANLCVRVKP 221
           AQAG+N+H L + T   CV++ P
Sbjct: 86  AQAGSNIHLLFEQTLKPCVKLSP 108

>RAG1_XENLA (Q91829) V(D)J recombination-activating protein 1 (RAG-1)|
          Length = 1045

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = -2

Query: 531 ESSSDSDDNAETTANKEWKVLESLGTAQVPRSASSFQLKPSENSAFV-RVKPIIGSGEEQ 355
           E S  S ++++ T  K   VLE L     P+S ++F+ + SE S  V   +  +   EE+
Sbjct: 42  EGSEVSYNSSQETYPKSTVVLEDLSLGSAPQSPTNFKPQQSEKSNVVDNHETDLKRLEEE 101

Query: 354 ARGFVPYKRCRV 319
           A   V  + CR+
Sbjct: 102 AHITVIQQLCRI 113

>ENV_SIVVG (P27977) Envelope polyprotein GP160 precursor [Contains: Exterior|
           membrane glycoprotein (GP120); Transmembrane
           glycoprotein (GP41)]
          Length = 877

 Score = 28.9 bits (63), Expect = 9.5
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 153 AQAGNNVHFLGQTTANLCVRVKP 221
           AQAG+N+H L + T   CV++ P
Sbjct: 85  AQAGSNIHLLFEQTLKPCVKLSP 107


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,604,811
Number of Sequences: 219361
Number of extensions: 1681908
Number of successful extensions: 4192
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 4031
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4190
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 4200495993
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)