ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62c02 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_465037.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1034 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 350 agagtcagaggtattgatccttgat 374 ||||||||||||||| ||||||||| Sbjct: 582 agagtcagaggtatttatccttgat 558 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 802 atcacatgctacaatcactt 783
>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence Length = 31433 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 67 cagaaggcaatctgcatacac 87 ||||||||||||||||||||| Sbjct: 11356 cagaaggcaatctgcatacac 11376
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 350 agagtcagaggtattgatccttgat 374 ||||||||||||||| ||||||||| Sbjct: 11065683 agagtcagaggtatttatccttgat 11065707 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 11065463 atcacatgctacaatcactt 11065482
>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1124_E11 Length = 133524 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Plus Query: 350 agagtcagaggtattgatccttgat 374 ||||||||||||||| ||||||||| Sbjct: 48377 agagtcagaggtatttatccttgat 48401 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 48157 atcacatgctacaatcactt 48176
>dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C12, full insert sequence Length = 1034 Score = 42.1 bits (21), Expect = 1.3 Identities = 24/25 (96%) Strand = Plus / Minus Query: 350 agagtcagaggtattgatccttgat 374 ||||||||||||||| ||||||||| Sbjct: 582 agagtcagaggtatttatccttgat 558 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 atcacatgctacaatcactt 174 |||||||||||||||||||| Sbjct: 802 atcacatgctacaatcactt 783
>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete sequence Length = 177314 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 82 atacactatctaattatctat 102 ||||||||||||||||||||| Sbjct: 152094 atacactatctaattatctat 152114
>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the FAM36A gene for member A of family with sequence similarity 36, the gene for a novel protein (FLJ37978, FLJ30202), the HNRPU gene for heterogeneous nuclear ribonucleoprotein U (scaffold attachment factor A) and three CpG islands, complete sequence Length = 124570 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Plus Query: 102 tggggaggttgggggagtaagaca 125 ||||||||||||||||| |||||| Sbjct: 70230 tggggaggttgggggaggaagaca 70253
>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome Length = 2971517 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 251 tgcgcagcaagcagagcgcc 270 |||||||||||||||||||| Sbjct: 305419 tgcgcagcaagcagagcgcc 305400
>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence Length = 214455 Score = 40.1 bits (20), Expect = 5.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 cagcaagcagagcgccatcc 274 |||||||||||||||||||| Sbjct: 85522 cagcaagcagagcgccatcc 85541
>emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chromosome 14, complete sequence Length = 184788 Score = 40.1 bits (20), Expect = 5.2 Identities = 26/28 (92%) Strand = Plus / Minus Query: 49 cttcagattctgcctgagcagaaggcaa 76 |||||||||||||||| |||||||||| Sbjct: 91900 cttcagattctgcctgcccagaaggcaa 91873
>emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surrounding NotI site, clone NL1-BG12R Length = 657 Score = 40.1 bits (20), Expect = 5.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 102 tggggaggttgggggagtaagaca 125 ||||||||||||||||| |||||| Sbjct: 253 tggggaggttgggggaggaagaca 230 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,676,381 Number of Sequences: 3902068 Number of extensions: 2676381 Number of successful extensions: 47749 Number of sequences better than 10.0: 11 Number of HSP's better than 10.0 without gapping: 11 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 47710 Number of HSP's gapped (non-prelim): 39 length of query: 390 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 368 effective length of database: 17,147,199,772 effective search space: 6310169516096 effective search space used: 6310169516096 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
