Clone Name | rbah61n02 |
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Clone Library Name | barley_pub |
>RCAA_HORVU (Q40073) Ribulose bisphosphate carboxylase/oxygenase activase A,| chloroplast precursor (RuBisCO activase A) (RA A) Length = 464 Score = 86.3 bits (212), Expect(2) = 1e-36 Identities = 38/38 (100%), Positives = 38/38 (100%) Frame = -3 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF Sbjct: 427 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 464 Score = 85.5 bits (210), Expect(2) = 1e-36 Identities = 41/41 (100%), Positives = 41/41 (100%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG Sbjct: 387 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 427
>RCA1_LARTR (Q7X9A0) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) (RubisCO activase alpha form) Length = 476 Score = 69.7 bits (169), Expect(2) = 5e-26 Identities = 33/41 (80%), Positives = 37/41 (90%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 G MLVQEQ+NVKRVQLAD YMS+AALGDAN DA+K G+FYG Sbjct: 397 GGMLVQEQENVKRVQLADKYMSEAALGDANNDAIKRGTFYG 437 Score = 66.6 bits (161), Expect(2) = 5e-26 Identities = 30/40 (75%), Positives = 33/40 (82%), Gaps = 1/40 (2%) Frame = -3 Query: 261 GGKGAQQ-GTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GG+ AQQ G +PVPEGCTD A NYDPTARSDDGSC+Y F Sbjct: 437 GGQAAQQVGNVPVPEGCTDPQATNYDPTARSDDGSCVYKF 476
>RCA_ARATH (P10896) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 474 Score = 67.8 bits (164), Expect(2) = 2e-25 Identities = 29/38 (76%), Positives = 33/38 (86%) Frame = -3 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLYTF 145 GKGAQQ LPVPEGCTD A+N+DPTARSDDG+C+Y F Sbjct: 437 GKGAQQVNLPVPEGCTDPVAENFDPTARSDDGTCVYNF 474 Score = 66.6 bits (161), Expect(2) = 2e-25 Identities = 31/41 (75%), Positives = 37/41 (90%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 G+MLV EQ+NVKRVQLA+TY+SQAALGDAN DA+ G+FYG Sbjct: 397 GNMLVMEQENVKRVQLAETYLSQAALGDANADAIGRGTFYG 437
>RCA_SPIOL (P10871) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 472 Score = 66.6 bits (161), Expect(2) = 2e-24 Identities = 31/41 (75%), Positives = 37/41 (90%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 G+MLVQEQ+NVKRVQLAD YMS AALGDAN+DA+ G+F+G Sbjct: 395 GNMLVQEQENVKRVQLADQYMSSAALGDANKDAIDRGTFFG 435 Score = 63.9 bits (154), Expect(2) = 2e-24 Identities = 28/36 (77%), Positives = 30/36 (83%) Frame = -3 Query: 258 GKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGSCLY 151 GK AQQ +LPV +GCTD AKNYDPTARSDDGSC Y Sbjct: 435 GKAAQQVSLPVAQGCTDPEAKNYDPTARSDDGSCTY 470
>RCAB_HORVU (Q42450) Ribulose bisphosphate carboxylase/oxygenase activase B,| chloroplast precursor (RuBisCO activase B) (RA B) Length = 425 Score = 73.9 bits (180), Expect = 1e-13 Identities = 34/41 (82%), Positives = 38/41 (92%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 GHMLVQEQ+NVKRVQLAD Y+S+AALG AN DAMKTG+FYG Sbjct: 384 GHMLVQEQENVKRVQLADKYLSEAALGQANDDAMKTGAFYG 424
>RCA_ORYSA (P93431) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 432 Score = 72.0 bits (175), Expect = 6e-13 Identities = 33/41 (80%), Positives = 39/41 (95%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 G+MLV+EQ+NVKRVQLA+ Y+S+AALGDAN DAMKTGSFYG Sbjct: 387 GYMLVKEQENVKRVQLAEQYLSEAALGDANSDAMKTGSFYG 427
>RCA_MALDO (Q40281) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 437 Score = 71.6 bits (174), Expect = 7e-13 Identities = 33/41 (80%), Positives = 38/41 (92%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFYG 306 G+MLVQEQ+NVKRVQLAD Y+S+AALGDAN DAM TG+FYG Sbjct: 397 GNMLVQEQENVKRVQLADKYLSEAALGDANSDAMNTGTFYG 437
>RCA_MAIZE (Q9ZT00) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 433 Score = 69.3 bits (168), Expect = 4e-12 Identities = 31/40 (77%), Positives = 38/40 (95%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 309 GHMLV EQ+NVKRVQLAD Y+++AALG+AN+DAMKTGSF+ Sbjct: 393 GHMLVAEQENVKRVQLADKYLNEAALGEANEDAMKTGSFF 432
>RCA2_LARTR (Q7X999) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) (RubisCO activase beta form) Length = 435 Score = 66.6 bits (161), Expect = 2e-11 Identities = 31/39 (79%), Positives = 37/39 (94%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 312 G+MLV+EQ+NVKRVQLAD YMS+AALGDANQDA+K G+F Sbjct: 397 GNMLVEEQENVKRVQLADKYMSEAALGDANQDAIKRGTF 435
>RCA_PHAAU (O98997) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 439 Score = 65.5 bits (158), Expect = 5e-11 Identities = 29/40 (72%), Positives = 39/40 (97%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 309 G+MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 399 GNMLVQEQENVKRVQLADKYLNEAALGNANEDAIKSGSFF 438
>RCA2_TOBAC (Q40565) Ribulose bisphosphate carboxylase/oxygenase activase 2,| chloroplast precursor (RuBisCO activase 2) (RA 2) Length = 439 Score = 63.9 bits (154), Expect = 2e-10 Identities = 29/39 (74%), Positives = 36/39 (92%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSF 312 G+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG+F Sbjct: 401 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTGNF 439
>RCA1_TOBAC (Q40460) Ribulose bisphosphate carboxylase/oxygenase activase 1,| chloroplast precursor (RuBisCO activase 1) (RA 1) Length = 442 Score = 63.5 bits (153), Expect = 2e-10 Identities = 29/40 (72%), Positives = 35/40 (87%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 309 G+MLVQEQ+NVKRVQLAD Y+ +AALGDAN DA+ GSF+ Sbjct: 401 GNMLVQEQENVKRVQLADKYLKEAALGDANADAINNGSFF 440
>RCA_PHAVU (O64981) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 441 Score = 62.8 bits (151), Expect = 3e-10 Identities = 28/38 (73%), Positives = 37/38 (97%) Frame = -1 Query: 422 MLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTGSFY 309 MLVQEQ+NVKRVQLAD Y+++AALG+AN+DA+K+GSF+ Sbjct: 403 MLVQEQENVKRVQLADQYLNEAALGNANEDAIKSGSFF 440
>RCA_LYCPN (O49074) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 459 Score = 61.2 bits (147), Expect = 1e-09 Identities = 28/37 (75%), Positives = 34/37 (91%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAALGDANQDAMKTG 318 G+MLVQEQ+NVKRVQLA+TY+ +AALGDAN DA+ TG Sbjct: 396 GNMLVQEQENVKRVQLAETYLKEAALGDANADAINTG 432
>RCA_CHLRE (P23489) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 408 Score = 37.4 bits (85), Expect = 0.015 Identities = 18/26 (69%), Positives = 20/26 (76%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQLADTYMSQAAL 351 G LV EQ+NVKRVQLAD Y+S A L Sbjct: 369 GKSLVDEQENVKRVQLADAYLSGAEL 394
>TFE2_XENLA (Q01978) Transcription factor E2-alpha (Transcription factor| XE12/XE47) Length = 658 Score = 28.9 bits (63), Expect = 5.4 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 2/55 (3%) Frame = -3 Query: 318 FLLRLENSPYTPTI--SCCIGGGKGAQQGTLPVPEGCTDQNAKNYDPTARSDDGS 160 F L + N PT S GGG G ++ T P G D N +D DG+ Sbjct: 26 FPLPVANGKTRPTTLASTQFGGGSGLEERTGSAPWGTEDHNGSTFDQGRGYGDGT 80
>LAMA5_HUMAN (O15230) Laminin alpha-5 chain precursor| Length = 3695 Score = 28.5 bits (62), Expect = 7.1 Identities = 12/21 (57%), Positives = 12/21 (57%) Frame = +3 Query: 162 CRRRSLPLGRSSWHFGRCNLP 224 CRR P GR H GRCN P Sbjct: 2114 CRRCQCPGGRCDPHTGRCNCP 2134
>RCA_CUCSA (Q01587) Ribulose bisphosphate carboxylase/oxygenase activase,| chloroplast precursor (RuBisCO activase) (RA) Length = 413 Score = 28.1 bits (61), Expect = 9.2 Identities = 12/16 (75%), Positives = 15/16 (93%) Frame = -1 Query: 428 GHMLVQEQDNVKRVQL 381 G+MLV EQ+NVKRV+L Sbjct: 394 GNMLVMEQENVKRVKL 409
>CORIN_HUMAN (Q9Y5Q5) Atrial natriuteric peptide-converting enzyme (EC 3.4.21.-)| (pro-ANP-converting enzyme) (Corin) (Heart-specific serine proteinase ATC2) (Transmembrane protease, serine 10) Length = 1042 Score = 28.1 bits (61), Expect = 9.2 Identities = 15/39 (38%), Positives = 23/39 (58%) Frame = +3 Query: 276 RWWVCMENFLTVEGTSLHRILVSITQSCLAHVGVSKLHT 392 RW N+ ++ GT+LH +LV+ QSC + +S L T Sbjct: 749 RWLTLHSNWESLNGTTLHELLVN-GQSCESRSKISLLCT 786 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 62,671,455 Number of Sequences: 219361 Number of extensions: 1262378 Number of successful extensions: 3205 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 3123 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3204 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2395157885 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)