ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62c01
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_465037.1| Oryza sativa (japonica cultivar-group), mRNA 90 8e-15
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
3dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic D... 90 8e-15
4dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clon... 90 8e-15
5dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone... 46 0.11
6gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence 42 1.7
7emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chr... 42 1.7
8gb|AC102159.10| Mus musculus chromosome 19, clone RP23-398L11, c... 40 6.8
9emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chrom... 40 6.8
10gb|CP000284.1| Methylobacillus flagellatus KT, complete genome 40 6.8
11dbj|AK136904.1| Mus musculus adult male diencephalon cDNA, RIKEN... 40 6.8
12gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosom... 40 6.8
13ref|NM_009218.2| Mus musculus somatostatin receptor 3 (Sstr3), mRNA 40 6.8
14emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chr... 40 6.8
15emb|AL590144.10| Mouse DNA sequence from clone RP23-79F10 on chr... 40 6.8
16emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surroundi... 40 6.8 
>ref|XM_465037.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1034

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 402 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 461
           |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467

                                                    
Query: 462 tacgcatcgattatggcgcttgcccaagtgtgcaacacctc 502
           || ||||| |  || || || ||||||||||| || |||||
Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctc 426



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 atcacatgctacaatcactt 170
           ||||||||||||||||||||
Sbjct: 802 atcacatgctacaatcactt 783
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                            
Query: 402      attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 461
                |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 11065739 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 11065798

                                                         
Query: 462      tacgcatcgattatggcgcttgcccaagtgtgcaacacctc 502
                || ||||| |  || || || ||||||||||| || |||||
Sbjct: 11065799 tatgcatcaacaatagcactggcccaagtgtgtaatacctc 11065839



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 151      atcacatgctacaatcactt 170
                ||||||||||||||||||||
Sbjct: 11065463 atcacatgctacaatcactt 11065482
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>dbj|AP004229.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OJ1124_E11
          Length = 133524

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 87/101 (86%)
 Strand = Plus / Plus

                                                                         
Query: 402   attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 461
             |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 48433 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 48492

                                                      
Query: 462   tacgcatcgattatggcgcttgcccaagtgtgcaacacctc 502
             || ||||| |  || || || ||||||||||| || |||||
Sbjct: 48493 tatgcatcaacaatagcactggcccaagtgtgtaatacctc 48533



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 151   atcacatgctacaatcactt 170
             ||||||||||||||||||||
Sbjct: 48157 atcacatgctacaatcactt 48176
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>dbj|AK062800.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-107-C12, full
           insert sequence
          Length = 1034

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 87/101 (86%)
 Strand = Plus / Minus

                                                                       
Query: 402 attttagggttcatcaagtcccttgcctgcccaaggagagtgccttccctgctgctgtaa 461
           |||||||||||||||||||||||||| |||| ||||||||||||||| |||||| | |||
Sbjct: 526 attttagggttcatcaagtcccttgcttgcctaaggagagtgccttctctgctgttataa 467

                                                    
Query: 462 tacgcatcgattatggcgcttgcccaagtgtgcaacacctc 502
           || ||||| |  || || || ||||||||||| || |||||
Sbjct: 466 tatgcatcaacaatagcactggcccaagtgtgtaatacctc 426



 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 151 atcacatgctacaatcactt 170
           ||||||||||||||||||||
Sbjct: 802 atcacatgctacaatcactt 783
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>dbj|AP004534.1| Lotus japonicus genomic DNA, chromosome 4, clone:LjT14P20, TM0087,
             complete sequence
          Length = 124300

 Score = 46.1 bits (23), Expect = 0.11
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 391   ccctctttataattttagggttc 413
             |||||||||||||||||||||||
Sbjct: 22562 ccctctttataattttagggttc 22540
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>gb|U88165.1| Caenorhabditis elegans cosmid F54C1, complete sequence
          Length = 31433

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 63    cagaaggcaatctgcatacac 83
             |||||||||||||||||||||
Sbjct: 11356 cagaaggcaatctgcatacac 11376
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>emb|AL732569.5| Mouse DNA sequence from clone RP23-215O19 on chromosome 4, complete
              sequence
          Length = 177314

 Score = 42.1 bits (21), Expect = 1.7
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 78     atacactatctaattatctat 98
              |||||||||||||||||||||
Sbjct: 152094 atacactatctaattatctat 152114
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>gb|AC102159.10| Mus musculus chromosome 19, clone RP23-398L11, complete sequence
          Length = 197134

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 431   cccaaggagagtgccttccc 450
             ||||||||||||||||||||
Sbjct: 24151 cccaaggagagtgccttccc 24132
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>emb|BX323046.3| Human DNA sequence from clone RP11-11N7 on chromosome 1 Contains the
             FAM36A gene for member A of family with sequence
             similarity 36, the gene for a novel protein (FLJ37978,
             FLJ30202), the HNRPU gene for heterogeneous nuclear
             ribonucleoprotein U (scaffold attachment factor A) and
             three CpG islands, complete sequence
          Length = 124570

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 98    tggggaggttgggggagtaagaca 121
             ||||||||||||||||| ||||||
Sbjct: 70230 tggggaggttgggggaggaagaca 70253
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>gb|CP000284.1| Methylobacillus flagellatus KT, complete genome
          Length = 2971517

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 247    tgcgcagcaagcagagcgcc 266
              ||||||||||||||||||||
Sbjct: 305419 tgcgcagcaagcagagcgcc 305400
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>dbj|AK136904.1| Mus musculus adult male diencephalon cDNA, RIKEN full-length enriched
            library, clone:9330174K12 product:somatostatin receptor
            3, full insert sequence
          Length = 3930

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 39   tgtcntcttcagattctgcctga 61
            |||| ||||||||||||||||||
Sbjct: 2783 tgtcttcttcagattctgcctga 2761
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>gb|AC156799.2| Mus musculus BAC clone RP23-341L15 from chromosome 9, complete sequence
          Length = 214455

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 251   cagcaagcagagcgccatcc 270
             ||||||||||||||||||||
Sbjct: 85522 cagcaagcagagcgccatcc 85541
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>ref|NM_009218.2| Mus musculus somatostatin receptor 3 (Sstr3), mRNA
          Length = 3930

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 39   tgtcntcttcagattctgcctga 61
            |||| ||||||||||||||||||
Sbjct: 2783 tgtcttcttcagattctgcctga 2761
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>emb|CT033778.16| Mouse DNA sequence from clone RP23-424G4 on chromosome 14, complete
             sequence
          Length = 184788

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 45    cttcagattctgcctgagcagaaggcaa 72
             ||||||||||||||||  ||||||||||
Sbjct: 91900 cttcagattctgcctgcccagaaggcaa 91873
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>emb|AL590144.10| Mouse DNA sequence from clone RP23-79F10 on chromosome 15, complete
             sequence
          Length = 166677

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 39    tgtcntcttcagattctgcctga 61
             |||| ||||||||||||||||||
Sbjct: 39948 tgtcttcttcagattctgcctga 39926
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>emb|AJ343034.1|HSA343034 Homo sapiens genomic sequence surrounding NotI site, clone
           NL1-BG12R
          Length = 657

 Score = 40.1 bits (20), Expect = 6.8
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 98  tggggaggttgggggagtaagaca 121
           ||||||||||||||||| ||||||
Sbjct: 253 tggggaggttgggggaggaagaca 230


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,798,919
Number of Sequences: 3902068
Number of extensions: 3798919
Number of successful extensions: 67995
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 67931
Number of HSP's gapped (non-prelim): 64
length of query: 502
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 480
effective length of database: 17,147,199,772
effective search space: 8230655890560
effective search space used: 8230655890560
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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