>GME1_ORYSA (Q338B5) GDP-mannose 3,5-epimerase 1 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 1) (OsGME-1)
          Length = 378

 Score =  120 bits (300), Expect = 2e-27
 Identities = 57/62 (91%), Positives = 60/62 (96%)
 Frame = -1

Query: 419 KLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADG 240
           KLGWAPTMKLKDGLRFTYFWIKEQIEKE+T+G D+A YGSSKVVSTQAPVQLGSLRAADG
Sbjct: 317 KLGWAPTMKLKDGLRFTYFWIKEQIEKEKTQGVDIAGYGSSKVVSTQAPVQLGSLRAADG 376

Query: 239 KE 234
           KE
Sbjct: 377 KE 378

>GME2_ORYSA (Q2R1V8) GDP-mannose 3,5-epimerase 2 (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase 2)
          Length = 371

 Score =  112 bits (279), Expect = 5e-25
 Identities = 52/62 (83%), Positives = 57/62 (91%)
 Frame = -1

Query: 419 KLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADG 240
           KLGWAPTM+LKDGLR TYFWIKEQ+EKE+ EG D++ YGSSKVV TQAPVQLGSLRAADG
Sbjct: 310 KLGWAPTMRLKDGLRITYFWIKEQLEKEKAEGVDLSAYGSSKVVQTQAPVQLGSLRAADG 369

Query: 239 KE 234
           KE
Sbjct: 370 KE 371

>GME_ARATH (Q93VR3) GDP-mannose 3,5-epimerase (EC 5.1.3.18) (GDP-Man|
           3,5-epimerase)
          Length = 377

 Score =  109 bits (272), Expect = 3e-24
 Identities = 51/62 (82%), Positives = 56/62 (90%)
 Frame = -1

Query: 419 KLGWAPTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADG 240
           KLGWAP M+LK+GLR TYFWIKEQIEKE+ +G DV+ YGSSKVV TQAPVQLGSLRAADG
Sbjct: 316 KLGWAPNMRLKEGLRITYFWIKEQIEKEKAKGSDVSLYGSSKVVGTQAPVQLGSLRAADG 375

Query: 239 KE 234
           KE
Sbjct: 376 KE 377

>FCL2_ARATH (Q9LMU0) Putative GDP-L-fucose synthase 2 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           2) (AtGER2)
          Length = 328

 Score = 33.9 bits (76), Expect = 0.16
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -1

Query: 416 LGWAPTMKLKDGLRFTYFWIKEQIEKER 333
           LGW P + LKDGL  TY W  E + +++
Sbjct: 300 LGWTPKISLKDGLSQTYEWYLENVVQKK 327

>GFRA3_MOUSE (O35118) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 397

 Score = 30.8 bits (68), Expect = 1.4
 Identities = 17/51 (33%), Positives = 20/51 (39%)
 Frame = -1

Query: 191 PNCPPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSLCQQNSS 39
           PNC  + SF          C A P+C S       HCHP  +L  C    S
Sbjct: 243 PNCLDLRSF----------CRADPLCRSRLMDFQTHCHPMDILGTCATEQS 283

>FCL1_ARATH (O49213) GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1) (AtGER1) (AtFX)
          Length = 312

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = -1

Query: 416 LGWAPTMKLKDGLRFTYFWIKEQI 345
           LGW P + L+DGL  TY W  + +
Sbjct: 286 LGWTPKVSLRDGLSQTYDWYLKNV 309

>RY44_DROME (Q24498) Ryanodine receptor 44F|
          Length = 5127

 Score = 30.4 bits (67), Expect = 1.8
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +3

Query: 192  QWHNRPGVDMHSCLLLAVSRAEGAQLHRCLCGHHL 296
            Q   R G D H   LL +  AEGA+L  C   HHL
Sbjct: 1974 QAFEREGKDEHRKGLLTMKMAEGAKLQMCYLLHHL 2008

>PANC_NEIMA (P57035) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 16/45 (35%), Positives = 24/45 (53%)
 Frame = -1

Query: 368 YFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 234
           Y W+ + +E  R +  +VAR G  K+V   A  +LG+ R  D  E
Sbjct: 231 YGWVVDYVEIRRVDTLEVARAGDKKLV-VLAAARLGTTRLIDNLE 274

>GFRA3_HUMAN (O60609) GDNF family receptor alpha-3 precursor (GFR-alpha-3)|
          Length = 400

 Score = 30.0 bits (66), Expect = 2.3
 Identities = 18/53 (33%), Positives = 22/53 (41%), Gaps = 2/53 (3%)
 Frame = -1

Query: 191 PNC--PPIGSFVAKTLENCTACPAYPMCDSADSSAPVHCHPH*LLSLCQQNSS 39
           PNC  PP+       LE    C + P+C S       HCHP  +L  C    S
Sbjct: 237 PNCALPPVAP---NCLELRRLCFSDPLCRSRLVDFQTHCHPMDILGTCATEQS 286

>FCL1_ORYSA (Q67WR2) Probable GDP-L-fucose synthase 1 (EC 1.1.1.271)|
           (GDP-4-keto-6-deoxy-D-mannose-3, 5-epimerase-4-reductase
           1)
          Length = 328

 Score = 29.6 bits (65), Expect = 3.0
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = -1

Query: 419 KLGWAPTMKLKDGLRFTYFWIKEQI 345
           ++GW P + LK+GL  TY W  E +
Sbjct: 299 EMGWKPKVPLKEGLVETYKWYVENV 323

>EMR1_MOUSE (Q61549) EGF-like module-containing mucin-like hormone|
           receptor-like 1 precursor (Cell surface glycoprotein
           EMR1) (EMR1 hormone receptor) (Cell surface glycoprotein
           F4/80)
          Length = 931

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = +3

Query: 114 THGVGRAGCAILKCFRNEGSDRWAIGQWHNRPGVDMHSCLLLAV 245
           T+ +GRA C+ L+ F +     W +G   N    D+  CL + +
Sbjct: 99  TNILGRAKCSCLRGFSSSTGKDWILGSLDNFLCADVDECLTIGI 142

>ARLY_PROMA (Q7VEK0) Argininosuccinate lyase (EC 4.3.2.1) (Arginosuccinase)|
           (ASAL)
          Length = 462

 Score = 29.3 bits (64), Expect = 3.9
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 407 APTMKLKDGLRFTYFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQL 264
           A T+ L++GL F+   +KE +E + +   DVA Y  SK +  +   Q+
Sbjct: 341 AMTILLEEGLEFSLERLKETVEADFSNATDVADYLVSKNIPFREAYQI 388

>YQAK_BACSU (P45908) Hypothetical protein yqaK|
          Length = 284

 Score = 28.9 bits (63), Expect = 5.2
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -1

Query: 416 LGWAPTMKLKDGLRFTYFWIKEQIEKER 333
           +G+A   +L +G R T +W K Q+EK +
Sbjct: 158 IGYAAYFELINGFRKTVYWTKAQVEKHK 185

>NOTC1_BRARE (P46530) Neurogenic locus notch homolog protein 1 precursor|
          Length = 2437

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
 Frame = -2

Query: 277 HRCSWAPSARLTARSKQLCISTPG-LLCHCPIAHRSDPSLRKHLRIAQPALPTPC 116
           + C+ +PS     R+   CI+  G  LC CP  + + P  +   R+ QP LP+PC
Sbjct: 179 NECAVSPSP---CRNGGTCINEVGSYLCRCPPEY-TGPHCQ---RLYQPCLPSPC 226

>ALCR_EMENI (P21228) Regulatory protein alcR|
          Length = 821

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = -2

Query: 169 PSLRKHLRIAQPALPTPCVIQQILVLLFIVTPI 71
           P    H +I+QPA   PC  +Q    L   TP+
Sbjct: 566 PDHESHTQISQPAARWPCTYEQAAAALSSATPV 598

>MBHS_RHOCA (P15283) Uptake hydrogenase small subunit precursor (EC 1.12.99.6)|
           (Hydrogenlyase) (Membrane-bound hydrogenase small
           subunit)
          Length = 358

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 4/51 (7%)
 Frame = -1

Query: 314 ARYGSSKVVSTQAPVQLGSLRAA--DGKE*TTMH--INPRPIMPLPNCPPI 174
           A  G+  ++S  A    G ++AA  +  + T +H  I  +PI+ +P CPPI
Sbjct: 147 AAEGAKAIISWGACASYGCVQAAAPNPTQATPVHKVITDKPIIKVPGCPPI 197

>PANC_NEIMB (P57036) Pantoate--beta-alanine ligase (EC 6.3.2.1) (Pantothenate|
           synthetase) (Pantoate-activating enzyme)
          Length = 278

 Score = 28.5 bits (62), Expect = 6.7
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = -1

Query: 368 YFWIKEQIEKERTEGKDVARYGSSKVVSTQAPVQLGSLRAADGKE 234
           Y W+ + +E  R +  +VAR G  K+V   A   LG+ R  D  E
Sbjct: 231 YGWVVDYVEIRRADTLEVARAGDKKLV-VLAAACLGTTRLIDNLE 274

>UL87_SHV21 (Q01007) Gene 24 protein|
          Length = 731

 Score = 28.1 bits (61), Expect = 8.8
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 95  APVHCHPH*LLSLCQQNS 42
           A VH HPH ++ LC QN+
Sbjct: 246 AAVHSHPHIVIKLCSQNA 263


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 56,632,178
Number of Sequences: 219361
Number of extensions: 1043191
Number of successful extensions: 3388
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 3266
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3383
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2286875994
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)