Clone Name | rbah61m24 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_196510.1| Oryza sativa (japonica cultivar-group) putative epimerase/dehydratase (OSJNBa0061K21.15), mRNA Length = 1137 Score = 192 bits (97), Expect = 6e-46 Identities = 166/189 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1137 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1078 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 1077 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 1018 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggccca 410 ||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct: 1017 ctccttgatccagaagtaggtgaacctcagcccgtccttgagcttcattgtgggtgccca 958 Query: 411 gccaagctt 419 ||||||||| Sbjct: 957 gccaagctt 949
>dbj|AB193582.1| Oryza sativa (japonica cultivar-group) OsGME-1 mRNA for GDP-mannose-3'',5''-epimerase, complete cds Length = 1212 Score = 192 bits (97), Expect = 6e-46 Identities = 166/189 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1173 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1114 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 1113 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 1054 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggccca 410 ||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct: 1053 ctccttgatccagaagtaggtgaacctcagcccgtccttgagcttcattgtgggtgccca 994 Query: 411 gccaagctt 419 ||||||||| Sbjct: 993 gccaagctt 985
>dbj|AK104822.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-041-B04, full insert sequence Length = 1587 Score = 192 bits (97), Expect = 6e-46 Identities = 166/189 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1258 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1199 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 1198 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 1139 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggccca 410 ||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct: 1138 ctccttgatccagaagtaggtgaacctcagcccgtccttgagcttcattgtgggtgccca 1079 Query: 411 gccaagctt 419 ||||||||| Sbjct: 1078 gccaagctt 1070
>dbj|AK069385.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023012D14, full insert sequence Length = 1592 Score = 192 bits (97), Expect = 6e-46 Identities = 166/189 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 1263 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 1204 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 1203 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 1144 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggccca 410 ||||||||||||||||||||||||||| || || |||||||||||||||||||| ||||| Sbjct: 1143 ctccttgatccagaagtaggtgaacctcagcccgtccttgagcttcattgtgggtgccca 1084 Query: 411 gccaagctt 419 ||||||||| Sbjct: 1083 gccaagctt 1075
>gb|AY104279.1| Zea mays PCO103545 mRNA sequence Length = 1547 Score = 186 bits (94), Expect = 4e-44 Identities = 163/186 (87%) Strand = Plus / Minus Query: 234 ctccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 293 |||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 1253 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 1194 Query: 294 cttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctgctc 353 |||||| || |||||| |||| ||| ||||| ||| ||||||||||||||||||| Sbjct: 1193 cttggacgacccgtacgccgcgatgtcgaccccctgcgtcttctccttctcgatctgctc 1134 Query: 354 cttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggcccagcc 413 |||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| Sbjct: 1133 tttgatccagaagtaggtgaaccgcagcccatccttgagcttcatcgtcggggcccagcc 1074 Query: 414 aagctt 419 |||||| Sbjct: 1073 aagctt 1068
>gb|BT016578.1| Zea mays clone Contig411 mRNA sequence Length = 1538 Score = 155 bits (78), Expect = 1e-34 Identities = 159/186 (85%) Strand = Plus / Minus Query: 234 ctccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 293 |||||||||||| || | ||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 1251 ctccttgccgtcggcggggcggagggagcccagctgcacgggcgcctgggtggacaccac 1192 Query: 294 cttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctgctc 353 |||||| || |||||| |||| ||| ||||| || ||||||| |||||||| || Sbjct: 1191 cttggacgacccgtacgccgcgatgtcgaccccctgcgtgttctccttgtcgatctggtc 1132 Query: 354 cttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggcccagcc 413 |||||||||||||||||||||| || ||||||||||||||||| || ||||||||||| Sbjct: 1131 tttgatccagaagtaggtgaaccgcagcccatccttgagcttcatcgtcggggcccagcc 1072 Query: 414 aagctt 419 |||||| Sbjct: 1071 aagctt 1066
>gb|DQ207723.1| Zea mays cultivar inbred line Mo17 IDP512 marker Length = 473 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 234 ctccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 293 |||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 115 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 174 Query: 294 cttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctgctc 353 |||||| || |||||| |||| ||| ||||| ||| ||||||||||||||||||| Sbjct: 175 cttggacgacccgtacgccgcgatgtcgaccccctgcgtcttctccttctcgatctgctc 234 Query: 354 cttgatccagaagtaggtgaacc 376 |||||||||||||||||||||| Sbjct: 235 tttgatccagaagtaggtgaacc 257 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||| || ||||||||||||||||| Sbjct: 359 ccttgagcttcatcgtcggggcccagccaagctt 392
>gb|DQ207722.1| Zea mays cultivar B73 IDP512 marker Length = 527 Score = 141 bits (71), Expect = 2e-30 Identities = 125/143 (87%) Strand = Plus / Plus Query: 234 ctccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacaccac 293 |||||||||||| || ||||||||||||||||||||||| || ||||| ||||||||||| Sbjct: 107 ctccttgccgtcggcggcgcggagggagcccagctgcacgggcgcctgggtggacaccac 166 Query: 294 cttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctgctc 353 |||||| || |||||| |||| ||| ||||| ||| ||||||||||||||||||| Sbjct: 167 cttggacgacccgtacgccgcgatgtcgaccccctgcgtcttctccttctcgatctgctc 226 Query: 354 cttgatccagaagtaggtgaacc 376 |||||||||||||||||||||| Sbjct: 227 tttgatccagaagtaggtgaacc 249 Score = 52.0 bits (26), Expect = 0.001 Identities = 32/34 (94%) Strand = Plus / Plus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||| || ||||||||||||||||| Sbjct: 351 ccttgagcttcatcgtcggggcccagccaagctt 384
>gb|AC016780.6| Genomic Sequence For Oryza sativa (japonica cultivar-group) cultivar Nipponbare Clone OSJNBa0061K21 From Chromosome 10, complete sequence Length = 112721 Score = 141 bits (71), Expect = 2e-30 Identities = 128/147 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 68476 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 68417 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 68416 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 68357 Query: 351 ctccttgatccagaagtaggtgaacct 377 ||||||||||||||||||||||||||| Sbjct: 68356 ctccttgatccagaagtaggtgaacct 68330 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||||||||| |||||||||||||| Sbjct: 68188 ccttgagcttcattgtgggtgcccagccaagctt 68155
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 141 bits (71), Expect = 2e-30 Identities = 128/147 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 14128838 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 14128779 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 14128778 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 14128719 Query: 351 ctccttgatccagaagtaggtgaacct 377 ||||||||||||||||||||||||||| Sbjct: 14128718 ctccttgatccagaagtaggtgaacct 14128692 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||||||||| |||||||||||||| Sbjct: 14128550 ccttgagcttcattgtgggtgcccagccaagctt 14128517
>gb|AC027658.1| Oryza sativa (japonica cultivar-group) BAC nbxb0006I13 chromosome 10, complete sequence Length = 142737 Score = 141 bits (71), Expect = 2e-30 Identities = 128/147 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 911 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 852 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 851 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 792 Query: 351 ctccttgatccagaagtaggtgaacct 377 ||||||||||||||||||||||||||| Sbjct: 791 ctccttgatccagaagtaggtgaacct 765 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||||||||| |||||||||||||| Sbjct: 623 ccttgagcttcattgtgggtgcccagccaagctt 590
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 141 bits (71), Expect = 2e-30 Identities = 128/147 (87%) Strand = Plus / Minus Query: 231 ttactccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacac 290 |||||||||||| || || || ||||||||||||||||| ||||| ||||| |||||||| Sbjct: 14137080 ttactccttgccatcggcagcacggagggagcccagctgaaccggggcctgggtggacac 14137021 Query: 291 caccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctg 350 |||||||||||| ||||| | |||| ||| |||| |||| |||||||||| ||||| Sbjct: 14137020 caccttggatgagccgtaacccgcgatgtcgacgccctgggtcttctccttctctatctg 14136961 Query: 351 ctccttgatccagaagtaggtgaacct 377 ||||||||||||||||||||||||||| Sbjct: 14136960 ctccttgatccagaagtaggtgaacct 14136934 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 386 ccttgagcttcattgtgggggcccagccaagctt 419 ||||||||||||||||||| |||||||||||||| Sbjct: 14136792 ccttgagcttcattgtgggtgcccagccaagctt 14136759
>dbj|AK102348.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091C16, full insert sequence Length = 1533 Score = 101 bits (51), Expect = 2e-18 Identities = 156/189 (82%), Gaps = 4/189 (2%) Strand = Plus / Minus Query: 233 actccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 292 ||||||| || ||||| || ||||||||||| ||||||||||| ||||| || ||| | Sbjct: 1189 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 1130 Query: 293 ccttggatgatccgtaccgggcgac--gtccttcccctcggtcctctccttctcgatctg 350 |||||||||| ||||| || |||| ||| ||||||| | |||||||||||| ||| Sbjct: 1129 ccttggatgacccgta--ggccgacaagtcgacgccctcggccttctccttctcgagctg 1072 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggccca 410 |||||||||||||||||| |||| ||| || |||||||| ||| |||| || || ||||| Sbjct: 1071 ctccttgatccagaagtatgtgatcctcagaccatccttcagcctcatggttggagccca 1012 Query: 411 gccaagctt 419 ||||||||| Sbjct: 1011 gccaagctt 1003
>gb|AY106775.1| Zea mays PCO117540 mRNA sequence Length = 541 Score = 101 bits (51), Expect = 2e-18 Identities = 153/187 (81%) Strand = Plus / Minus Query: 233 actccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 292 |||||||||| ||||| |||||||||||||| ||||| ||||| |||||||| ||| | Sbjct: 317 actccttgccatcagcggcgcggagggagccgagctgaaccggggcctgtgtctgcacga 258 Query: 293 ccttggatgatccgtaccgggcgacgtccttcccctcggtcctctccttctcgatctgct 352 |||||||||||||||| | | ||| | ||||||| | |||||||||| | ||||| Sbjct: 257 ccttggatgatccgtagaccgacagatccatgccctcggccttctccttctcaagctgct 198 Query: 353 ccttgatccagaagtaggtgaaccttaggccatccttgagcttcattgtgggggcccagc 412 ||||||||||| |||| |||| ||| || || ||||| ||| |||| || || ||||||| Sbjct: 197 ccttgatccaggagtacgtgatcctcagcccgtccttcagcctcatagtcggagcccagc 138 Query: 413 caagctt 419 ||||||| Sbjct: 137 caagctt 131
>gb|AC146334.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone B1356F10, complete sequence Length = 170681 Score = 79.8 bits (40), Expect = 7e-12 Identities = 130/158 (82%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 233 actccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 292 ||||||| || ||||| || ||||||||||| ||||||||||| ||||| || ||| | Sbjct: 129761 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 129820 Query: 293 ccttggatgatccgtaccgggcgac--gtccttcccctcggtcctctccttctcgatctg 350 |||||||||| ||||| || |||| ||| ||||||| | |||||||||||| ||| Sbjct: 129821 ccttggatgacccgta--ggccgacaagtcgacgccctcggccttctccttctcgagctg 129878 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatcct 388 |||||||||||||||||| |||| ||| || ||||||| Sbjct: 129879 ctccttgatccagaagtatgtgatcctcagaccatcct 129916
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 79.8 bits (40), Expect = 7e-12 Identities = 130/158 (82%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 233 actccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 292 ||||||| || ||||| || ||||||||||| ||||||||||| ||||| || ||| | Sbjct: 21606242 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 21606301 Query: 293 ccttggatgatccgtaccgggcgac--gtccttcccctcggtcctctccttctcgatctg 350 |||||||||| ||||| || |||| ||| ||||||| | |||||||||||| ||| Sbjct: 21606302 ccttggatgacccgta--ggccgacaagtcgacgccctcggccttctccttctcgagctg 21606359 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatcct 388 |||||||||||||||||| |||| ||| || ||||||| Sbjct: 21606360 ctccttgatccagaagtatgtgatcctcagaccatcct 21606397
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 79.8 bits (40), Expect = 7e-12 Identities = 130/158 (82%), Gaps = 4/158 (2%) Strand = Plus / Plus Query: 233 actccttgccgtcagccgcgcggagggagcccagctgcaccggtgcctgtgtggacacca 292 ||||||| || ||||| || ||||||||||| ||||||||||| ||||| || ||| | Sbjct: 21916441 actcctttccatcagcagcacggagggagccaagctgcaccggcgcctgagtctgcacta 21916500 Query: 293 ccttggatgatccgtaccgggcgac--gtccttcccctcggtcctctccttctcgatctg 350 |||||||||| ||||| || |||| ||| ||||||| | |||||||||||| ||| Sbjct: 21916501 ccttggatgacccgta--ggccgacaagtcgacgccctcggccttctccttctcgagctg 21916558 Query: 351 ctccttgatccagaagtaggtgaaccttaggccatcct 388 |||||||||||||||||| |||| ||| || ||||||| Sbjct: 21916559 ctccttgatccagaagtatgtgatcctcagaccatcct 21916596
>gb|DQ268848.1| Solanum tuberosum clone 155B09 NAD-dependent epimerase/dehydratase family protein-like protein mRNA, complete cds Length = 1521 Score = 60.0 bits (30), Expect = 6e-06 Identities = 33/34 (97%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctccttgatccagaagta 368 |||| ||||||||||||||||||||||||||||| Sbjct: 1051 tctctttctcgatctgctccttgatccagaagta 1018
>ref|NM_122767.2| Arabidopsis thaliana GDP-mannose 3,5-epimerase/ catalytic AT5G28840 mRNA, complete cds Length = 1611 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctccttgatccagaagtaggt 371 |||| ||||||||||| ||||| |||||||||||||| Sbjct: 1208 tctctttctcgatctgttcctttatccagaagtaggt 1172 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcagccgcgcggagggagcccagctgcaccggtgc 278 |||||||||||||| ||||| ||||| |||||||| Sbjct: 1299 tcagccgcgcggagtgagcctagctgaaccggtgc 1265
>gb|AY116953.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds Length = 1134 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctccttgatccagaagtaggt 371 |||| ||||||||||| ||||| |||||||||||||| Sbjct: 1030 tctctttctcgatctgttcctttatccagaagtaggt 994 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcagccgcgcggagggagcccagctgcaccggtgc 278 |||||||||||||| ||||| ||||| |||||||| Sbjct: 1121 tcagccgcgcggagtgagcctagctgaaccggtgc 1087
>gb|AY057694.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds Length = 1404 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctccttgatccagaagtaggt 371 |||| ||||||||||| ||||| |||||||||||||| Sbjct: 1093 tctctttctcgatctgttcctttatccagaagtaggt 1057 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcagccgcgcggagggagcccagctgcaccggtgc 278 |||||||||||||| ||||| ||||| |||||||| Sbjct: 1184 tcagccgcgcggagtgagcctagctgaaccggtgc 1150
>gb|AY057660.1| Arabidopsis thaliana AT5g28840/F7P1_20 mRNA, complete cds Length = 1452 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctccttgatccagaagtaggt 371 |||| ||||||||||| ||||| |||||||||||||| Sbjct: 1093 tctctttctcgatctgttcctttatccagaagtaggt 1057 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Minus Query: 244 tcagccgcgcggagggagcccagctgcaccggtgc 278 |||||||||||||| ||||| ||||| |||||||| Sbjct: 1184 tcagccgcgcggagtgagcctagctgaaccggtgc 1150
>gb|AF272706.1|F7P1 Arabidopsis thaliana BAC F7P1 Length = 110714 Score = 50.1 bits (25), Expect = 0.006 Identities = 34/37 (91%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctccttgatccagaagtaggt 371 |||| ||||||||||| ||||| |||||||||||||| Sbjct: 18762 tctctttctcgatctgttcctttatccagaagtaggt 18798 Score = 46.1 bits (23), Expect = 0.091 Identities = 32/35 (91%) Strand = Plus / Plus Query: 244 tcagccgcgcggagggagcccagctgcaccggtgc 278 |||||||||||||| ||||| ||||| |||||||| Sbjct: 18671 tcagccgcgcggagtgagcctagctgaaccggtgc 18705
>ref|XM_848981.1| PREDICTED: Canis familiaris similar to NACHT, LRR and PYD containing protein 10 (LOC611323), mRNA Length = 2061 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Minus Query: 338 ccttctcgatctgctccttgatccag 363 ||||||| |||||||||||||||||| Sbjct: 1108 ccttctccatctgctccttgatccag 1083
>gb|AC010708.10|AC010708 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone BACR10E05, complete sequence Length = 188766 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctccttgatc 360 ||||||||||||||| |||||||||| Sbjct: 176972 tctccttctcgatctcctccttgatc 176997
>gb|AC012098.9|AC012098 Drosophila melanogaster, chromosome X, region 17A-17B, BAC clone BACR03K10, complete sequence Length = 188489 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctccttgatc 360 ||||||||||||||| |||||||||| Sbjct: 92349 tctccttctcgatctcctccttgatc 92374
>gb|AE003509.5| Drosophila melanogaster chromosome X, section 61 of 74 of the complete sequence Length = 315109 Score = 44.1 bits (22), Expect = 0.36 Identities = 25/26 (96%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctccttgatc 360 ||||||||||||||| |||||||||| Sbjct: 16361 tctccttctcgatctcctccttgatc 16386
>gb|AC135720.8| Mus musculus chromosome 15, clone RP24-298F20, complete sequence Length = 156107 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 56 acaatgataataattaatggg 76 ||||||||||||||||||||| Sbjct: 81568 acaatgataataattaatggg 81548
>gb|AC018489.7| Drosophila melanogaster clone BACR19G19, complete sequence Length = 179077 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 170228 tctccttctcgatctgctcct 170208
>gb|AC022349.3| Drosophila melanogaster clone BACR33D04, complete sequence Length = 177576 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 96592 tctccttctcgatctgctcct 96572
>gb|AC118414.9| Rattus norvegicus 3 BAC CH230-223K21 (Children's Hospital Oakland Research Institute) complete sequence Length = 217330 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 50 gttgacacaatgataataatt 70 ||||||||||||||||||||| Sbjct: 83558 gttgacacaatgataataatt 83578
>gb|AY121637.1| Drosophila melanogaster HL04344 full insert cDNA Length = 1953 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 483 tctccttctcgatctgctcct 463
>ref|NM_206767.1| Drosophila melanogaster CG9132-PB, isoform B (CG9132) mRNA, complete cds Length = 1934 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 482 tctccttctcgatctgctcct 462
>ref|NM_206768.1| Drosophila melanogaster CG9132-PA, isoform A (CG9132) mRNA, complete cds Length = 1837 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Minus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 385 tctccttctcgatctgctcct 365
>gb|AE003503.4| Drosophila melanogaster chromosome X, section 55 of 74 of the complete sequence Length = 300468 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctcct 355 ||||||||||||||||||||| Sbjct: 161797 tctccttctcgatctgctcct 161817
>gb|AE014291.4| Brucella suis 1330 chromosome I, complete sequence Length = 2107794 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tccttgccgtcagccgcgcg 254 |||||||||||||||||||| Sbjct: 2074200 tccttgccgtcagccgcgcg 2074181
>gb|AC150687.3| Bos taurus BAC CH240-243M2 (Children's Hospital Oakland Research Institute Bovine BAC Library (male)) complete sequence Length = 144223 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 274 ggtgcctgtgtggacaccac 293 |||||||||||||||||||| Sbjct: 63885 ggtgcctgtgtggacaccac 63866
>ref|XM_368123.1| Magnaporthe grisea 70-15 chromosome VI hypothetical protein (MG01121.4) partial mRNA Length = 879 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 342 ctcgatctgctccttgatcc 361 |||||||||||||||||||| Sbjct: 855 ctcgatctgctccttgatcc 836
>gb|AC091324.10| Mus musculus chromosome 7, clone RP23-7G1, complete sequence Length = 225556 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 129 agggcaggctgtgcaattct 148 |||||||||||||||||||| Sbjct: 76656 agggcaggctgtgcaattct 76637
>emb|AL591783.1|SME591783 Sinorhizobium meliloti 1021 complete chromosome; segment 2/12 Length = 306650 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 342 ctcgatctgctccttgatcc 361 |||||||||||||||||||| Sbjct: 44978 ctcgatctgctccttgatcc 44997
>emb|AL353619.9| Human DNA sequence from clone RP11-563G12 on chromosome 9q21.33-22.33 Contains the 5' end of a novel gene and the DIRAS2 gene for DIRAS family GTP-binding RAS-like 2, complete sequence Length = 143299 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 44 aattctgttgacacaatgataataatta 71 |||||| ||| ||||||||||||||||| Sbjct: 47397 aattctattgtcacaatgataataatta 47370
>gb|AC021583.11| Homo sapiens chromosome 9, clone RP11-1026H23, complete sequence Length = 143857 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 44 aattctgttgacacaatgataataatta 71 |||||| ||| ||||||||||||||||| Sbjct: 91014 aattctattgtcacaatgataataatta 90987
>gb|AC104119.2| Homo sapiens chromosome 5 clone RP11-34D23, complete sequence Length = 168108 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 335 tctccttctcgatctgctcc 354 |||||||||||||||||||| Sbjct: 92147 tctccttctcgatctgctcc 92166
>gb|AC021582.13| Homo sapiens chromosome 9, clone RP11-687K5, complete sequence Length = 199612 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Minus Query: 44 aattctgttgacacaatgataataatta 71 |||||| ||| ||||||||||||||||| Sbjct: 23481 aattctattgtcacaatgataataatta 23454
>gb|AE009631.1| Brucella melitensis 16M chromosome I, section 188 of 195 of the complete sequence Length = 14375 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 235 tccttgccgtcagccgcgcg 254 |||||||||||||||||||| Sbjct: 2431 tccttgccgtcagccgcgcg 2450
>gb|AE017223.1| Brucella abortus biovar 1 str. 9-941 chromosome I, complete sequence Length = 2124241 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tccttgccgtcagccgcgcg 254 |||||||||||||||||||| Sbjct: 2090669 tccttgccgtcagccgcgcg 2090650
>gb|AC150680.7| Monodelphis domestica, clone XX-28D5, complete sequence Length = 154058 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 gcctgtgtggacaccacctt 296 |||||||||||||||||||| Sbjct: 141342 gcctgtgtggacaccacctt 141361
>gb|AE015924.1| Porphyromonas gingivalis W83, complete genome Length = 2343476 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 295 ttggatgatccgtaccgggc 314 |||||||||||||||||||| Sbjct: 1701234 ttggatgatccgtaccgggc 1701215
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 tctcgatctgctccttgatc 360 |||||||||||||||||||| Sbjct: 3780769 tctcgatctgctccttgatc 3780788
>dbj|AK113577.1| Ciona intestinalis cDNA, clone:ciad076a06, full insert sequence Length = 1443 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 344 cgatctgctccttgatccag 363 |||||||||||||||||||| Sbjct: 798 cgatctgctccttgatccag 817
>emb|AM040264.1| Brucella melitensis biovar Abortus chromosome I, complete sequence, strain 2308 Length = 2121359 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 235 tccttgccgtcagccgcgcg 254 |||||||||||||||||||| Sbjct: 2087788 tccttgccgtcagccgcgcg 2087769
>gb|DQ079316.1| Drosophila mulleri strain 15081-1371.00 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392
>gb|DQ079315.1| Drosophila mojavensis strain 15081-1352.02 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079314.1| Drosophila mojavensis strain 15081-1352.01 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079313.1| Drosophila mojavensis strain 15081-1352.00 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392
>gb|DQ079312.1| Drosophila mojavensis strain 15081-1351.09 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079311.1| Drosophila mojavensis strain 15081-1351.03 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079310.1| Drosophila mojavensis strain 15081-1351.14 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079309.1| Drosophila mojavensis strain 15081-1351.12 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079307.1| Drosophila arizonae strain 15081-1271.13 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079306.1| Drosophila arizonae strain 15081-1271.12 Tes33 (Tes33) gene, partial cds Length = 536 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 423 ttctcgatctgctccttgat 404
>gb|DQ079305.1| Drosophila arizonae strain 15081-1271.08 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392
>gb|DQ079304.1| Drosophila arizonae strain 15081-1271.05 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392
>gb|DQ079303.1| Drosophila arizonae strain 15081-1271.04 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392
>gb|DQ079302.1| Drosophila arizonae strain 15081-1271.00 Tes33 (Tes33) gene, partial cds Length = 524 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 ttctcgatctgctccttgat 359 |||||||||||||||||||| Sbjct: 411 ttctcgatctgctccttgat 392 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,371,224 Number of Sequences: 3902068 Number of extensions: 3371224 Number of successful extensions: 62556 Number of sequences better than 10.0: 65 Number of HSP's better than 10.0 without gapping: 65 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62317 Number of HSP's gapped (non-prelim): 236 length of query: 419 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 397 effective length of database: 17,147,199,772 effective search space: 6807438309484 effective search space used: 6807438309484 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)