ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah62b23 |
|---|---|
| Clone Library Name | barley_pub |
>YNIA_ENTAE (P46381) Hypothetical protein in tonB 3'region (Fragment)| Length = 118 Score = 33.5 bits (75), Expect = 0.22 Identities = 22/78 (28%), Positives = 36/78 (46%), Gaps = 6/78 (7%) Frame = +3 Query: 57 IDNTIEQTQQQLDSTFSVQHLPRPALMNHQFYLGSSTIDRPRNWI*RPSC-TSDNRC--- 224 IDN +E QQ+L S H P+P+L++ + G+ + +I P+C D C Sbjct: 2 IDNIVESVQQRLSS-----HQPQPSLLHGDLWSGNCALGPNGPYIFDPACYWGDRECDLA 56 Query: 225 --RCHQQEQSTVAPGYPS 272 H ++ + GY S Sbjct: 57 MLPLHPEQPPQIYDGYQS 74
>GLP1R_HUMAN (P43220) Glucagon-like peptide 1 receptor precursor (GLP-1| receptor) (GLP-1-R) (GLP-1R) Length = 463 Score = 32.0 bits (71), Expect = 0.65 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 313 ILCHGTLHTALASPDGYPGATVDCSCWWHRHLLSLVHEGRQIQF 182 + C+ T PDG PG+ V+ SC W+ S V +G +F Sbjct: 60 LFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRF 103
>GLP1R_RAT (P32301) Glucagon-like peptide 1 receptor precursor (GLP-1| receptor) (GLP-1-R) (GLP-1R) Length = 463 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 313 ILCHGTLHTALASPDGYPGATVDCSCWWHRHLLSLVHEGRQIQF 182 + C+ T PDG PG+ V+ SC W+ S V +G +F Sbjct: 60 LFCNRTFDDYACWPDGPPGSFVNVSCPWYLPWASSVLQGHVYRF 103
>GLP1R_MOUSE (O35659) Glucagon-like peptide 1 receptor precursor (GLP-1| receptor) (GLP-1-R) (GLP-1R) Length = 489 Score = 31.2 bits (69), Expect = 1.1 Identities = 15/44 (34%), Positives = 22/44 (50%) Frame = -2 Query: 313 ILCHGTLHTALASPDGYPGATVDCSCWWHRHLLSLVHEGRQIQF 182 + C+ T PDG PG+ V+ SC W+ S V +G +F Sbjct: 60 LFCNRTFDDYACWPDGPPGSFVNVSCPWYLPWASSVLQGHVYRF 103
>ATP9A_MOUSE (O70228) Probable phospholipid-transporting ATPase IIA (EC 3.6.3.1)| (ATPase class II type 9A) Length = 1047 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/65 (24%), Positives = 35/65 (53%) Frame = -3 Query: 360 HLVCMPTKLLLFKDAIFCAMAHCTPHWLLQMDTLVPLSIALAGGTDICCHLYMKVVRSSS 181 H+V + L+ + + A+ T HWL+ + L+ L+ +A + + H ++ V ++ Sbjct: 952 HIVAISFTSLILTELLMVALTIQTWHWLMTVAELLSLACYIA--SLVFLHEFIDVYFIAT 1009 Query: 180 LAYLW 166 L++LW Sbjct: 1010 LSFLW 1014
>ATP9A_HUMAN (O75110) Probable phospholipid-transporting ATPase IIA (EC 3.6.3.1)| (ATPase class II type 9A) (ATPase IIA) Length = 1047 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/65 (24%), Positives = 35/65 (53%) Frame = -3 Query: 360 HLVCMPTKLLLFKDAIFCAMAHCTPHWLLQMDTLVPLSIALAGGTDICCHLYMKVVRSSS 181 H+V + L+ + + A+ T HWL+ + L+ L+ +A + + H ++ V ++ Sbjct: 952 HIVAISFTSLILTELLMVALTIQTWHWLMTVAELLSLACYIA--SLVFLHEFIDVYFIAT 1009 Query: 180 LAYLW 166 L++LW Sbjct: 1010 LSFLW 1014
>RRMJ_BRUSU (Q8FVY1) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 240 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 181 GTGSDDLHVQVTTDVGATSKSNRQWHQGIHLEKP 282 G GS +LHV+V G +S+R+W + HL P Sbjct: 18 GAGSSNLHVRVKKKAGTIKESSRRWLER-HLNDP 50
>RRMJ_BRUME (Q8YCD5) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 240 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 181 GTGSDDLHVQVTTDVGATSKSNRQWHQGIHLEKP 282 G GS +LHV+V G +S+R+W + HL P Sbjct: 18 GAGSSNLHVRVKKKAGTIKESSRRWLER-HLNDP 50
>RRMJ_BRUAB (Q578H4) Ribosomal RNA large subunit methyltransferase J (EC| 2.1.1.-) (rRNA (uridine-2'-O-)-methyltransferase) (23S rRNA m2U2552 methyltransferase) Length = 240 Score = 30.0 bits (66), Expect = 2.5 Identities = 14/34 (41%), Positives = 20/34 (58%) Frame = +1 Query: 181 GTGSDDLHVQVTTDVGATSKSNRQWHQGIHLEKP 282 G GS +LHV+V G +S+R+W + HL P Sbjct: 18 GAGSSNLHVRVKKKAGTIKESSRRWLER-HLNDP 50
>DLK_MOUSE (Q09163) Delta-like protein precursor (DLK) (Preadipocyte factor 1)| (Pref-1) (Adipocyte differentiation inhibitor protein) [Contains: Fetal antigen 1 (FA1)] Length = 385 Score = 30.0 bits (66), Expect = 2.5 Identities = 16/43 (37%), Positives = 19/43 (44%), Gaps = 6/43 (13%) Frame = +3 Query: 204 CTSDNRCRCHQQ------EQSTVAPGYPSGEANAVCSVPWHKI 314 C +DN CRCH ++ APG N VC PW I Sbjct: 37 CEADNVCRCHVGWEGPLCDKCVTAPGC----VNGVCKEPWQCI 75
>YNIA_ECOLI (P77739) Hypothetical protein yniA| Length = 286 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +3 Query: 57 IDNTIEQTQQQLDSTFSVQHLPRPALMNHQFYLGSSTIDRPRNWI*RPSC-TSDNRC--- 224 ID +E QQ+L S H P+P+L++ + G+ + +I P+C D C Sbjct: 169 IDAIVEHIQQRLAS-----HQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLA 223 Query: 225 --RCHQQEQSTVAPGYPS 272 H ++ + GY S Sbjct: 224 MLPLHTEQPPQIYDGYQS 241
>YNIA_ECO57 (P58065) Hypothetical protein yniA| Length = 286 Score = 29.6 bits (65), Expect = 3.2 Identities = 21/78 (26%), Positives = 35/78 (44%), Gaps = 6/78 (7%) Frame = +3 Query: 57 IDNTIEQTQQQLDSTFSVQHLPRPALMNHQFYLGSSTIDRPRNWI*RPSC-TSDNRC--- 224 ID +E QQ+L S H P+P+L++ + G+ + +I P+C D C Sbjct: 169 IDAIVEHIQQRLAS-----HQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLA 223 Query: 225 --RCHQQEQSTVAPGYPS 272 H ++ + GY S Sbjct: 224 MLPLHTEQPPQIYDGYQS 241
>ZFP27_MOUSE (P10077) Zinc finger protein 27 (Zfp-27) (mKR4 protein)| Length = 819 Score = 29.6 bits (65), Expect = 3.2 Identities = 15/24 (62%), Positives = 15/24 (62%), Gaps = 1/24 (4%) Frame = +1 Query: 232 TSKSNRQWHQGIHL-EKPMRCAVC 300 T KS Q HQ IH EKP RCA C Sbjct: 747 TKKSQLQVHQRIHTGEKPYRCAEC 770
>CUL1_ARATH (Q94AH6) Cullin-1| Length = 738 Score = 29.3 bits (64), Expect = 4.2 Identities = 11/13 (84%), Positives = 13/13 (100%) Frame = -1 Query: 431 RDKENPNVYRYLA 393 RDKENPN++RYLA Sbjct: 726 RDKENPNMFRYLA 738
>YNIA_KLEPN (P46382) Hypothetical protein in tonB 3'region (Fragment)| Length = 123 Score = 28.9 bits (63), Expect = 5.5 Identities = 19/78 (24%), Positives = 34/78 (43%), Gaps = 6/78 (7%) Frame = +3 Query: 57 IDNTIEQTQQQLDSTFSVQHLPRPALMNHQFYLGSSTIDRPRNWI*RPSC-TSDNRC--- 224 ID ++ QQ+L H P+P+L++ + G+ + +I P+C D C Sbjct: 2 IDTLVDMVQQRL-----ANHQPQPSLLHGDLWSGNCALGPDGPYIFDPACYWGDRECDLA 56 Query: 225 --RCHQQEQSTVAPGYPS 272 H ++ + GY S Sbjct: 57 MLPMHPEQPPQIYDGYQS 74
>ZN235_HUMAN (Q14590) Zinc finger protein 235 (Zinc finger protein 93 homolog)| (Zfp-93) (Zinc finger protein HZF6) (Fragment) Length = 209 Score = 28.9 bits (63), Expect = 5.5 Identities = 14/26 (53%), Positives = 17/26 (65%), Gaps = 1/26 (3%) Frame = +1 Query: 226 GATSKSNRQWHQGIHL-EKPMRCAVC 300 G +S S+ Q HQ +H EKP RC VC Sbjct: 40 GFSSASSFQSHQRVHTGEKPFRCNVC 65
>ERG7_MOUSE (Q8BLN5) Lanosterol synthase (EC 5.4.99.7)| (Oxidosqualene--lanosterol cyclase) (2,3-epoxysqualene--lanosterol cyclase) (OSC) Length = 733 Score = 28.9 bits (63), Expect = 5.5 Identities = 20/70 (28%), Positives = 26/70 (37%), Gaps = 8/70 (11%) Frame = -1 Query: 368 FGNIWCVCLPSYCY--LRMLYFVPWHTAHRIGFSRWIP------WCHCRLLLLVAPTSVV 213 +G W L Y + L L+ W F W+P WCHCR + L Sbjct: 193 WGKFWLAVLNVYSWEGLNTLFPEMWL------FPEWVPAHPSTLWCHCRQVYLPMSYCYA 246 Query: 212 TCT*RSSDPV 183 T S DP+ Sbjct: 247 TRLSASEDPL 256
>GP123_HUMAN (Q86SQ6) Probable G-protein coupled receptor 123| Length = 1280 Score = 28.5 bits (62), Expect = 7.2 Identities = 14/39 (35%), Positives = 18/39 (46%) Frame = -2 Query: 268 GYPGATVDCSCWWHRHLLSLVHEGRQIQFLGLSMVELPR 152 G P +T +CWW H GR FLG ++L R Sbjct: 101 GLPVSTRVAACWWQH------HPGRDSGFLGPGFIDLLR 133
>EPHB4_MOUSE (P54761) Ephrin type-B receptor 4 precursor (EC 2.7.10.1)| (Tyrosine-protein kinase receptor MDK-2) (Developmental kinase 2) (Tyrosine kinase MYK-1) Length = 987 Score = 25.8 bits (55), Expect(2) = 8.6 Identities = 11/30 (36%), Positives = 15/30 (50%) Frame = +3 Query: 204 CTSDNRCRCHQQEQSTVAPGYPSGEANAVC 293 C D + Q + APGY + E+N VC Sbjct: 239 CREDGQWAEQQVTGCSCAPGYEAAESNKVC 268 Score = 20.8 bits (42), Expect(2) = 8.6 Identities = 8/13 (61%), Positives = 8/13 (61%) Frame = +2 Query: 392 KPSIGRRSGSPCP 430 KP IG S PCP Sbjct: 277 KPQIGDESCLPCP 289
>ZN227_HUMAN (Q86WZ6) Zinc finger protein 227| Length = 799 Score = 28.1 bits (61), Expect = 9.4 Identities = 14/30 (46%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = +1 Query: 214 TTDVGATSKSNRQWHQGIHL-EKPMRCAVC 300 T G + S Q HQ +H EKP RC VC Sbjct: 524 TCGKGFSQSSKLQTHQRVHTGEKPYRCDVC 553
>CY15A_PANTR (Q6GVM5) Putative testis protein CYorf15A homolog| Length = 131 Score = 28.1 bits (61), Expect = 9.4 Identities = 17/47 (36%), Positives = 25/47 (53%) Frame = +3 Query: 156 GSSTIDRPRNWI*RPSCTSDNRCRCHQQEQSTVAPGYPSGEANAVCS 296 GS I + R+W+ CT ++R +QE VAP PSG+ C+ Sbjct: 46 GSDFITKNRSWVSPVHCTQESRKELPEQE---VAP--PSGQQALQCN 87 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 69,480,716 Number of Sequences: 219361 Number of extensions: 1541766 Number of successful extensions: 3948 Number of sequences better than 10.0: 21 Number of HSP's better than 10.0 without gapping: 3848 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3948 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2453576370 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
