ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61m22
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GALT_CLOPE (Q8XKP8) Galactose-1-phosphate uridylyltransferase (E... 28 6.2
2AMGO2_PONPY (Q5R7M3) Amphoterin-induced protein 2 precursor (AMI... 28 8.1
3AMGO2_HUMAN (Q86SJ2) Amphoterin-induced protein 2 precursor (AMI... 28 8.1

>GALT_CLOPE (Q8XKP8) Galactose-1-phosphate uridylyltransferase (EC 2.7.7.12)|
           (Gal-1-P uridylyltransferase)
           (UDP-glucose--hexose-1-phosphate uridylyltransferase)
          Length = 498

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +3

Query: 24  YNIMRTXIYIXTDSIHIQACFLEPCWYMNMDIHIFLGTNKKD 149
           Y++ ++  YI TD I     F  P  Y  MDI I L   +KD
Sbjct: 115 YSLSKSSNYIRTDRIAKNINFKAPSKYGTMDITINLSKPEKD 156



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>AMGO2_PONPY (Q5R7M3) Amphoterin-induced protein 2 precursor (AMIGO-2)|
          Length = 522

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 153 IYLSYLFLRICVCPCSCTNMARENML 76
           I L  L+L +  CPC C    ++NML
Sbjct: 410 IVLVLLYLYLTPCPCKCKTKRQKNML 435



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>AMGO2_HUMAN (Q86SJ2) Amphoterin-induced protein 2 precursor (AMIGO-2)|
           (Alivin-1) (Differentially expressed in gastric
           adenocarcinomas) (DEGA)
          Length = 522

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = -1

Query: 153 IYLSYLFLRICVCPCSCTNMARENML 76
           I L  L+L +  CPC C    ++NML
Sbjct: 410 IVLVLLYLYLTPCPCKCKTKRQKNML 435


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,009,292
Number of Sequences: 219361
Number of extensions: 633260
Number of successful extensions: 1563
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1518
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1561
length of database: 80,573,946
effective HSP length: 60
effective length of database: 67,412,286
effective search space used: 1617894864
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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