Clone Name | rbah61m22 |
---|---|
Clone Library Name | barley_pub |
>emb|AJ131738.1|SCE131738 Secale cereale mRNA for hypothetical protein, clone 9 Length = 875 Score = 341 bits (172), Expect = 6e-91 Identities = 221/237 (93%), Gaps = 1/237 (0%) Strand = Plus / Minus Query: 19 tattgtataatattatgcgtacgtncatatacatagncaccgacagcattcacatacaag 78 |||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 830 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 771 Query: 79 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 138 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 770 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 711 Query: 139 ataagaaagataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcat 198 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct: 710 ataagaaagataaatggacaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 651 Query: 199 tggcactttatatgtggcccatcgcgcagtgagctttttatgccttgtcggactcct 255 |||||||||||||| ||||| | | | |||||||| ||||||||||| ||||||||| Sbjct: 650 tggcactttatatgcggcccgtggtg-agtgagctgtttatgccttgccggactcct 595
>emb|X00235.1|TARUB2 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39 ribulosebisphosphate carboxylase) clones 234 and 406 Length = 743 Score = 333 bits (168), Expect = 2e-88 Identities = 220/237 (92%), Gaps = 1/237 (0%) Strand = Plus / Minus Query: 19 tattgtataatattatgcgtacgtncatatacatagncaccgacagcattcacatacaag 78 |||||||||||||||||||| ||| ||||||||||| |||||| ||||||| ||||| || Sbjct: 709 tattgtataatattatgcgtccgttcatatacatagccaccgatagcattctcatacgag 650 Query: 79 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 138 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 649 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 590 Query: 139 ataagaaagataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcat 198 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 589 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 530 Query: 199 tggcactttatatgtggcccatcgcgcagtgagctttttatgccttgtcggactcct 255 ||||||||||||| ||||| ||| | |||||||| |||| |||||| ||||||||| Sbjct: 529 tggcactttatatatggcctgtcgtg-agtgagctgtttaggccttgccggactcct 474
>gb|K02324.1|WHTRBCC Wheat (T. aestivum) chloroplast ribulosebisphosphate carboxylase small subunit mRNA, clone pTS406, 3' end Length = 317 Score = 333 bits (168), Expect = 2e-88 Identities = 220/237 (92%), Gaps = 1/237 (0%) Strand = Plus / Minus Query: 19 tattgtataatattatgcgtacgtncatatacatagncaccgacagcattcacatacaag 78 |||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 283 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 224 Query: 79 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 138 |||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 223 catgctttctcgagccatgttcgtacatgaacatggacatacacatattcttaggaacaa 164 Query: 139 ataagaaagataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcat 198 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 163 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 104 Query: 199 tggcactttatatgtggcccatcgcgcagtgagctttttatgccttgtcggactcct 255 ||||||||||||| ||||| ||| | |||||||| |||| |||||| ||||||||| Sbjct: 103 tggcactttatatatggcctgtcgtg-agtgagctgtttaggccttgccggactcct 48
>emb|X83095.1|ASRBCSSS A.squarrosa mRNA for ribulose-1,5-bisphosphate carboxylase/oxygenase, small subunit Length = 837 Score = 317 bits (160), Expect = 9e-84 Identities = 181/189 (95%) Strand = Plus / Minus Query: 19 tattgtataatattatgcgtacgtncatatacatagncaccgacagcattcacatacaag 78 |||||||||||||||||||| ||| ||||||||||| |||||| ||||||||||||| || Sbjct: 790 tattgtataatattatgcgtccgtgcatatacatagccaccgatagcattcacatacgag 731 Query: 79 catgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 138 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 730 catgctttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaa 671 Query: 139 ataagaaagataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcat 198 ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| Sbjct: 670 ataagaaagataaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaa 611 Query: 199 tggcacttt 207 ||||||||| Sbjct: 610 tggcacttt 602
>emb|X00234.1|TARUB1 Wheat mRNA fragment for small subunit precursor of RuBPCase (EC 4.1.1.39) (ribulosebisphosphate carboxylase, clone 512) Length = 611 Score = 276 bits (139), Expect = 3e-71 Identities = 206/228 (90%), Gaps = 1/228 (0%) Strand = Plus / Minus Query: 28 atattatgcgtacgtncatatacatagncaccgacagcattcacatacaagcatgttttc 87 |||||||| | | || ||||||||||| |||||| |||||||||||| |||| | |||| Sbjct: 549 atattatgtgcatgtgcatatacatagccaccgattgcattcacatacgagcacgctttc 490 Query: 88 tcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaataagaaag 147 ||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 489 tcgagccatgttgttacatgaacatggacatacacatattcttaggaacaagtaagaaag 430 Query: 148 ataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcattggcacttt 207 | |||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct: 429 acaaatggagaaggaaaacccaaagcaatgtcagagttgacaaaactgcaatggcacttt 370 Query: 208 atatgtggcccatcgcgcagtgagctttttatgccttgtcggactcct 255 ||||||||||| | | | |||||||| |||| |||||| ||||||||| Sbjct: 369 atatgtggcccgtggtg-agtgagctgtttaggccttgccggactcct 323
>gb|U43493.1|HVU43493 Hordeum vulgare ribulose-1,5-bisphosphate carboxylase small subunit mRNA, complete cds Length = 816 Score = 167 bits (84), Expect = 2e-38 Identities = 207/236 (87%), Gaps = 11/236 (4%) Strand = Plus / Minus Query: 20 attgtataatattatgcgtacgtncatatacatagncaccgacagcattcacatacaagc 79 |||||||||||||||| | | || ||||||||||| |||||| ||||||||||||| ||| Sbjct: 753 attgtataatattatgtgcatgtgcatatacatagccaccgatagcattcacatacgagc 694 Query: 80 atgttttctcgagccatgttggtacatgaacatggacatacacatattcttaggaacaaa 139 ||| ||||||||| ||||||||||||||||||||| |||||| ||| |||||||| || Sbjct: 693 atgctttctcgag-catgttggtacatgaacatgggactacacacatt-ttaggaac-aa 637 Query: 140 taagaaagataaatggngaaggaaaacccaaagcaatgtcagagttgacaaaactgcatt 199 |||||||||| ||||| ||||||||||| |||| |||||||||||||| |||||||| | Sbjct: 636 taagaaagat-aatggagaaggaaaacc--aagc-atgtcagagttgac-aaactgcaat 582 Query: 200 ggcactttatatgtggcccatcgcgcagtgagctttttatgccttgtcggactcct 255 ||||| |||||||| |||||||| ||||||||| ||||||||||| | ||||||| Sbjct: 581 ggcac-ttatatgt-gcccatcg-tcagtgagctgtttatgccttgcccgactcct 529
>emb|BX572625.7| Zebrafish DNA sequence from clone CH211-192O15 in linkage group 12, complete sequence Length = 155592 Score = 46.1 bits (23), Expect = 0.053 Identities = 23/23 (100%) Strand = Plus / Minus Query: 101 gtacatgaacatggacatacaca 123 ||||||||||||||||||||||| Sbjct: 152158 gtacatgaacatggacatacaca 152136
>gb|AC113171.3| Homo sapiens chromosome 3 clone RP11-696A14, complete sequence Length = 183599 Score = 46.1 bits (23), Expect = 0.053 Identities = 28/30 (93%) Strand = Plus / Minus Query: 136 caaataagaaagataaatggngaaggaaaa 165 ||||||||||||| |||||| ||||||||| Sbjct: 97466 caaataagaaagaaaaatggagaaggaaaa 97437
>ref|NM_144845.2| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2 (Ugt3a2), mRNA Length = 2197 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
>gb|BC022134.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2, transcript variant 1, mRNA (cDNA clone MGC:37820 IMAGE:5098754), complete cds Length = 2196 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
>gb|BC034837.1| Mus musculus UDP glycosyltransferases 3 family, polypeptide A2, transcript variant 1, mRNA (cDNA clone MGC:37957 IMAGE:5134131), complete cds Length = 2192 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 849 aaaatccaaagcaaagtcagagttgacaaa 820
>emb|CR384085.5| Zebrafish DNA sequence from clone CH211-267K7 in linkage group 5, complete sequence Length = 140947 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 13 acatattattgtataatattat 34 |||||||||||||||||||||| Sbjct: 93606 acatattattgtataatattat 93627
>emb|BX572632.7| Zebrafish DNA sequence from clone CH211-162I20 in linkage group 5, complete sequence Length = 162716 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Minus Query: 13 acatattattgtataatattat 34 |||||||||||||||||||||| Sbjct: 75971 acatattattgtataatattat 75950
>gb|AC004138.3| Arabidopsis thaliana chromosome 2 clone T17M13 map CIC11A04, complete sequence Length = 104016 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 14 catattattgtataatattatg 35 |||||||||||||||||||||| Sbjct: 102439 catattattgtataatattatg 102460
>dbj|AK143815.1| Mus musculus 6 days neonate spleen cDNA, RIKEN full-length enriched library, clone:F430112M20 product:Hypothetical protein (Hypothetical UDP-glucoronosyl and UDP-glucosyl transferase containing protein), full insert sequence Length = 2284 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 883 aaaatccaaagcaaagtcagagttgacaaa 854
>dbj|AK052644.1| Mus musculus 0 day neonate kidney cDNA, RIKEN full-length enriched library, clone:D630011D02 product:HYPOTHETICAL 59.7 KDA PROTEIN [Mus musculus]; weakly similar to UDP-Glycosyltransferase/glycogen phosphorylase, full insert sequence Length = 1723 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 878 aaaatccaaagcaaagtcagagttgacaaa 849
>dbj|AK050128.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length enriched library, clone:C730018P11 product:hypothetical UDP-glucoronosyl and UDP-glucosyl transferase containing protein, full insert sequence Length = 2197 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 869 aaaatccaaagcaaagtcagagttgacaaa 840
>dbj|AK041045.1| Mus musculus adult male aorta and vein cDNA, RIKEN full-length enriched library, clone:A530069C13 product:hypothetical UDP-Glycosyltransferase/glycogen phosphorylase structure containing protein, full insert sequence Length = 1353 Score = 44.1 bits (22), Expect = 0.21 Identities = 28/30 (93%) Strand = Plus / Minus Query: 162 aaaacccaaagcaatgtcagagttgacaaa 191 |||| ||||||||| ||||||||||||||| Sbjct: 853 aaaatccaaagcaaagtcagagttgacaaa 824
>emb|BX005282.24| Zebrafish DNA sequence from clone DKEY-37M22 in linkage group 11, complete sequence Length = 153270 Score = 44.1 bits (22), Expect = 0.21 Identities = 22/22 (100%) Strand = Plus / Plus Query: 10 ttgacatattattgtataatat 31 |||||||||||||||||||||| Sbjct: 88645 ttgacatattattgtataatat 88666
>gb|AC108919.7| Mus musculus chromosome 6, clone RP23-52O21, complete sequence Length = 141653 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Minus Query: 125 attcttaggaacaaataagaaagat 149 ||||||||||||||| ||||||||| Sbjct: 131901 attcttaggaacaaaaaagaaagat 131877
>emb|AL022345.2|HSY738F9 Human DNA sequence from clone XX-Y738F9 on chromosome 10 Contains the ZNF37B pseudogene for zinc finger protein 37b (KOX 21), a eukaryotic translation initiation factor 3 subunit 6 interacting protein (EIF3S6IP) pseudogene, the 3' end of the ZNF11B gene for zinc finger protein 11b (KOX 2), a novel gene (FLJ23327) and two CpG Islands, complete sequence Length = 146328 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 171 agcaatgtcagagttgacaaa 191 ||||||||||||||||||||| Sbjct: 137861 agcaatgtcagagttgacaaa 137841
>emb|BX548171.4| Zebrafish DNA sequence from clone DKEY-152J20 in linkage group 14, complete sequence Length = 174366 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 14 catattattgtataatattat 34 ||||||||||||||||||||| Sbjct: 161920 catattattgtataatattat 161900
>gb|AC153916.2| Mus musculus 6 BAC RP23-93D20 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 221540 Score = 42.1 bits (21), Expect = 0.83 Identities = 24/25 (96%) Strand = Plus / Plus Query: 125 attcttaggaacaaataagaaagat 149 ||||||||||||||| ||||||||| Sbjct: 193767 attcttaggaacaaaaaagaaagat 193791
>gb|L11243.1|RATRSKM2X Rat skeletal muscle voltage-sensitive sodium channel subtype 2 (rSkM2) gene Length = 2825 Score = 42.1 bits (21), Expect = 0.83 Identities = 21/21 (100%) Strand = Plus / Minus Query: 105 atgaacatggacatacacata 125 ||||||||||||||||||||| Sbjct: 1420 atgaacatggacatacacata 1400
>gb|AC170993.2| Mus musculus chromosome 1, clone wi1-2059I11, complete sequence Length = 41406 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 gtacatgaacatggacatacacatattc 128 ||||||||||||| ||||| |||||||| Sbjct: 12032 gtacatgaacatgtacatatacatattc 12005
>gb|AC169498.2| Mus musculus chromosome 1, clone wi1-807J5, complete sequence Length = 45765 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 101 gtacatgaacatggacatacacatattc 128 ||||||||||||| ||||| |||||||| Sbjct: 41180 gtacatgaacatgtacatatacatattc 41153
>gb|AE017349.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 9, complete sequence Length = 1178688 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aaacccaaagcaatgtcaga 182 |||||||||||||||||||| Sbjct: 1130897 aaacccaaagcaatgtcaga 1130916
>gb|AC145381.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0024K17 map near S16403, complete sequence Length = 172238 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 4895 acatgaacatgaacatacacatat 4872
>gb|AC145811.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0088L13 map near C50029S, complete sequence Length = 129900 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 123589 acatgaacatgaacatacacatat 123566
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 24888607 acatgaacatgaacatacacatat 24888584
>ref|XM_572904.1| Cryptococcus neoformans var. neoformans JEC21 protein phosphatase (CNI04270) partial mRNA Length = 3071 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 163 aaacccaaagcaatgtcaga 182 |||||||||||||||||||| Sbjct: 80 aaacccaaagcaatgtcaga 99
>gb|AC132050.4| Rattus norvegicus 20 BAC CH230-118G13 (Children's Hospital Oakland Research Institute) complete sequence Length = 247624 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 13 acatattattgtataatatt 32 |||||||||||||||||||| Sbjct: 213642 acatattattgtataatatt 213623
>gb|AC073617.16| Homo sapiens Xp BAC RP11-413F15 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151302 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Minus Query: 119 acacatattcttaggaacaaataagaaa 146 |||||||||||||| |||||| |||||| Sbjct: 9178 acacatattcttagtaacaaaaaagaaa 9151
>gb|AC112800.6| Rattus norvegicus X BAC CH230-275F1 (Children's Hospital Oakland Research Institute) complete sequence Length = 147560 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 133 gaacaaataagaaagataaa 152 |||||||||||||||||||| Sbjct: 45388 gaacaaataagaaagataaa 45407
>gb|AC010377.7| Homo sapiens chromosome 5 clone CTD-2060J20, complete sequence Length = 139476 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 105 atgaacatggacatacacatattc 128 |||||||||| ||||||||||||| Sbjct: 31202 atgaacatgggcatacacatattc 31225
>gb|AC007976.4| Drosophila melanogaster, chromosome 2L, region 22C-22D, BAC clone BACR01K07, complete sequence Length = 175867 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 atattattgtataatattat 34 |||||||||||||||||||| Sbjct: 122920 atattattgtataatattat 122901
>dbj|AK054537.1| Mus musculus 2 days pregnant adult female ovary cDNA, RIKEN full-length enriched library, clone:E330038M22 product:unclassifiable, full insert sequence Length = 3845 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 gtacatgaacatggacatacacatattc 128 ||||||||||||| ||||| |||||||| Sbjct: 695 gtacatgaacatgtacatatacatattc 722
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 11682609 acatgaacatgaacatacacatat 11682586 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 10428734 acatgaacatgaacatacacatat 10428757
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 24979677 acatgaacatgaacatacacatat 24979654
>gb|AC009101.7|AC009101 Homo sapiens chromosome 16 clone RP11-439I14, complete sequence Length = 172293 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Plus Query: 15 atattattgtataatattat 34 |||||||||||||||||||| Sbjct: 17042 atattattgtataatattat 17061
>gb|AC096547.1| Homo sapiens BAC clone CTD-2016K1 from 2, complete sequence Length = 129164 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 atattattgtataatattat 34 |||||||||||||||||||| Sbjct: 31292 atattattgtataatattat 31273
>dbj|AP006860.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1026E06 Length = 162784 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Plus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 5348 acatgaacatgaacatacacatat 5371
>dbj|AP004583.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBb0005N06 Length = 140639 Score = 40.1 bits (20), Expect = 3.3 Identities = 23/24 (95%) Strand = Plus / Minus Query: 103 acatgaacatggacatacacatat 126 ||||||||||| |||||||||||| Sbjct: 31151 acatgaacatgaacatacacatat 31128
>gb|AE003584.5| Drosophila melanogaster chromosome 2L, section 7 of 83 of the complete sequence Length = 346734 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 atattattgtataatattat 34 |||||||||||||||||||| Sbjct: 324111 atattattgtataatattat 324092
>gb|AC004340.1|AC004340 Drosophila melanogaster DNA sequence (P1 DS07020 (D238)), complete sequence Length = 51050 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 15 atattattgtataatattat 34 |||||||||||||||||||| Sbjct: 2952 atattattgtataatattat 2933
>emb|AL671901.14| Mouse DNA sequence from clone RP23-238B14 on chromosome X, complete sequence Length = 201821 Score = 40.1 bits (20), Expect = 3.3 Identities = 20/20 (100%) Strand = Plus / Minus Query: 105 atgaacatggacatacacat 124 |||||||||||||||||||| Sbjct: 17489 atgaacatggacatacacat 17470
>gb|AC170749.6| Mus musculus chromosome 1, clone RP23-322G4, complete sequence Length = 208713 Score = 40.1 bits (20), Expect = 3.3 Identities = 26/28 (92%) Strand = Plus / Plus Query: 101 gtacatgaacatggacatacacatattc 128 ||||||||||||| ||||| |||||||| Sbjct: 68296 gtacatgaacatgtacatatacatattc 68323 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,441,403 Number of Sequences: 3902068 Number of extensions: 2441403 Number of successful extensions: 49226 Number of sequences better than 10.0: 47 Number of HSP's better than 10.0 without gapping: 47 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 49120 Number of HSP's gapped (non-prelim): 100 length of query: 255 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 233 effective length of database: 17,147,199,772 effective search space: 3995297546876 effective search space used: 3995297546876 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)