Clone Name | rbah61m21 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-s... | 30 | 3.4 |
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>PGCA_CANFA (Q28343) Aggrecan core protein precursor (Cartilage-specific| proteoglycan core protein) (CSPCP) Length = 2333 Score = 30.4 bits (67), Expect = 3.4 Identities = 17/46 (36%), Positives = 27/46 (58%) Frame = +3 Query: 372 SPAISVTGRTSAHELLSALPTLITTTWSSAGTFHASFPSLASVATT 509 S A V+G +S E+ S+LP+ T+ +G FH +FP++ V T Sbjct: 1698 SGAAEVSGESSGAEVGSSLPS---GTYEGSGNFHPAFPTVFLVDRT 1740 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 67,348,891 Number of Sequences: 219361 Number of extensions: 1249418 Number of successful extensions: 3296 Number of sequences better than 10.0: 1 Number of HSP's better than 10.0 without gapping: 3218 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3296 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 4373119116 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)