ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61m21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 60 8e-06
2gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 60 8e-06
3emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa... 60 8e-06
4gb|AY105872.1| Zea mays PCO079046 mRNA sequence 50 0.008
5gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, comple... 46 0.12
6emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chr... 44 0.47
7emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chr... 44 0.47
8gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, compl... 44 0.47
9gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, compl... 44 0.47
10ref|NM_101374.2| Arabidopsis thaliana unknown protein AT1G15040 ... 42 1.9
11gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8... 42 1.9
12emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on ch... 42 1.9
13emb|AL590673.6| Human DNA sequence from clone RP11-202K9 on chro... 42 1.9
14gb|AF332456.1| Arabidopsis thaliana clone C00162 (e) unknown pro... 42 1.9
15emb|BX817147.1|CNS0AD8C Arabidopsis thaliana Full-length cDNA Co... 42 1.9
16dbj|AB205497.1| Uncultured bacterium gene for putative aminotran... 42 1.9
17gb|AC106819.3| Homo sapiens chromosome 16 clone RP11-696P19, com... 42 1.9
18gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D2... 42 1.9
19ref|NM_214275.1| Sus scrofa formiminotransferase-cyclodeaminase ... 42 1.9
20gb|L16507.1|PIGFORM Sus scrofa formiminotransferase-cyclodeamina... 42 1.9
21gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome 40 7.4
22gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, comple... 40 7.4
23gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and T... 40 7.4
24gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence 40 7.4
25gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, co... 40 7.4
26gb|BC044759.2| Mus musculus progesterone receptor membrane compo... 40 7.4
27ref|XM_543948.2| PREDICTED: Canis familiaris similar to GSK-3 bi... 40 7.4
28ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor m... 40 7.4
29ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor m... 40 7.4
30ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor m... 40 7.4
31gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, com... 40 7.4
32gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosom... 40 7.4
33gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, comp... 40 7.4
34gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, comple... 40 7.4
35gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, co... 40 7.4
36gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, compl... 40 7.4
37emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on ch... 40 7.4
38gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence 40 7.4
39gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate syntha... 40 7.4
40emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23... 40 7.4
41gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full... 40 7.4
42emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromos... 40 7.4
43gb|AC127387.3| Homo sapiens BAC clone RP11-28J3 from UL, complet... 40 7.4
44dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDN... 40 7.4
45dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN fu... 40 7.4
46gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, comp... 40 7.4
47dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full... 40 7.4
48gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, com... 40 7.4
49gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromo... 40 7.4
50dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome 40 7.4
51emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chro... 40 7.4
52gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, co... 40 7.4
53gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete... 40 7.4
54gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate ... 40 7.4
55emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on ch... 40 7.4 
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
                sequence
          Length = 27566993

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 505      ccaccggcgtcgcgttcatgtagaacatgtagag 538
                ||||||||||||||||||||||||||| ||||||
Sbjct: 17343809 ccaccggcgtcgcgttcatgtagaacacgtagag 17343842
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>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Plus

                                                  
Query: 505      ccaccggcgtcgcgttcatgtagaacatgtagag 538
                ||||||||||||||||||||||||||| ||||||
Sbjct: 17298180 ccaccggcgtcgcgttcatgtagaacacgtagag 17298213
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>emb|AL713927.3|CNS07YP4 Oryza sativa chromosome 12, . BAC OSJNBa0021B03 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 154826

 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 33/34 (97%)
 Strand = Plus / Minus

                                               
Query: 505   ccaccggcgtcgcgttcatgtagaacatgtagag 538
             ||||||||||||||||||||||||||| ||||||
Sbjct: 59560 ccaccggcgtcgcgttcatgtagaacacgtagag 59527
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>gb|AY105872.1| Zea mays PCO079046 mRNA sequence
          Length = 1346

 Score = 50.1 bits (25), Expect = 0.008
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 505 ccaccggcgtcgcgttcatgtagaacatgtagaggaccatc 545
           |||||||||||  |||||||||||||| |||||| ||||||
Sbjct: 902 ccaccggcgtcttgttcatgtagaacacgtagagcaccatc 862
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>gb|CP000248.1| Novosphingobium aromaticivorans DSM 12444, complete genome
          Length = 3561584

 Score = 46.1 bits (23), Expect = 0.12
 Identities = 29/31 (93%)
 Strand = Plus / Plus

                                              
Query: 424     ccttgccgacgttgatcacgacgacgtggtc 454
               ||||| || ||||||||||||||||||||||
Sbjct: 3505081 ccttgtcggcgttgatcacgacgacgtggtc 3505111
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>emb|BX005072.20| Human DNA sequence from clone XXyac-59F3 on chromosome 10 Contains the
             5' end of a novel gene, a novel gene (MGC35285) and a CpG
             island, complete sequence
          Length = 97407

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 466   ccttccatgcctctttcccctccttg 491
             |||||||| |||||||||||||||||
Sbjct: 44275 ccttccatacctctttcccctccttg 44250
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>emb|AL450334.15| Human DNA sequence from clone RP11-556L1 on chromosome 10 Contains gene
             DKFZP566K0524, the gene for a novel protein similar to
             tyrosine phosphatase (MGC35285), the 3' end of a KIAA0187
             pseudogene, the 3' end of a novel gene, the gene for a
             novel protein similar to ARF GTPase-activating protein
             (MRIP2) and a CpG island, complete sequence
          Length = 171930

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 466   ccttccatgcctctttcccctccttg 491
             |||||||| |||||||||||||||||
Sbjct: 63794 ccttccatacctctttcccctccttg 63769
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>gb|AC013284.9| Homo sapiens chromosome 10 clone RP11-13E1, complete sequence
          Length = 154259

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                       
Query: 466   ccttccatgcctctttcccctccttg 491
             |||||||| |||||||||||||||||
Sbjct: 97949 ccttccatacctctttcccctccttg 97974
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>gb|AC026739.7| Homo sapiens chromosome 5 clone CTD-2580L4, complete sequence
          Length = 186308

 Score = 44.1 bits (22), Expect = 0.47
 Identities = 25/26 (96%)
 Strand = Plus / Minus

                                       
Query: 466   ccttccatgcctctttcccctccttg 491
             |||||||| |||||||||||||||||
Sbjct: 61153 ccttccatacctctttcccctccttg 61128
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>ref|NM_101374.2| Arabidopsis thaliana unknown protein AT1G15040 transcript variant
            AT1G15040.2 mRNA, complete cds
          Length = 1753

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gtttgttttacatacatacag 159
            |||||||||||||||||||||
Sbjct: 992  gtttgttttacatacatacag 1012
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>gb|AE014843.1| Plasmodium falciparum 3D7 chromosome 11 section 8 of 8 of the complete
             sequence
          Length = 271546

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 190   aatattatttttcttggaaaa 210
             |||||||||||||||||||||
Sbjct: 37263 aatattatttttcttggaaaa 37243
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>emb|AL590995.14| Human DNA sequence from clone RP11-475B22 on chromosome 6, complete
           sequence
          Length = 113362

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 137 tagtttgttttacatacatacagta 161
           |||||||||||||||| ||||||||
Sbjct: 402 tagtttgttttacataaatacagta 378
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>emb|AL590673.6| Human DNA sequence from clone RP11-202K9 on chromosome 6, complete
              sequence
          Length = 123236

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 137    tagtttgttttacatacatacagta 161
              |||||||||||||||| ||||||||
Sbjct: 121638 tagtttgttttacataaatacagta 121614
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>gb|AF332456.1| Arabidopsis thaliana clone C00162 (e) unknown protein (At1g15045)
           mRNA, complete cds
          Length = 1002

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 139 gtttgttttacatacatacag 159
           |||||||||||||||||||||
Sbjct: 933 gtttgttttacatacatacag 953
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>emb|BX817147.1|CNS0AD8C Arabidopsis thaliana Full-length cDNA Complete sequence from clone
            GSLTPGH89ZF09 of Hormone Treated Callus of strain col-0
            of Arabidopsis thaliana (thale cress)
          Length = 1446

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 139  gtttgttttacatacatacag 159
            |||||||||||||||||||||
Sbjct: 988  gtttgttttacatacatacag 1008
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>dbj|AB205497.1| Uncultured bacterium gene for putative aminotransferase, partial
           cds, clone:sd2
          Length = 303

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 502 ccaccaccggcgtcgcgttca 522
           |||||||||||||||||||||
Sbjct: 56  ccaccaccggcgtcgcgttca 36
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>gb|AC106819.3| Homo sapiens chromosome 16 clone RP11-696P19, complete sequence
          Length = 122793

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 109   gaatcatacggaatcatcatc 129
             |||||||||||||||||||||
Sbjct: 61198 gaatcatacggaatcatcatc 61218



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 109  gaatcatacggaatcatcatc 129
            |||||||||||||||||||||
Sbjct: 1912 gaatcatacggaatcatcatc 1892



 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 109   gaatcatacggaatcatcat 128
             ||||||||||||||||||||
Sbjct: 59837 gaatcatacggaatcatcat 59856
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>gb|AC012189.3|T15D22 Arabidopsis thaliana chromosome 1 BAC T15D22 sequence, complete
             sequence
          Length = 23652

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 139   gtttgttttacatacatacag 159
             |||||||||||||||||||||
Sbjct: 19365 gtttgttttacatacatacag 19345
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>ref|NM_214275.1| Sus scrofa formiminotransferase-cyclodeaminase (FTCD), mRNA
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  agcccgcccccggggccgccg 345
            |||||||||||||||||||||
Sbjct: 1099 agcccgcccccggggccgccg 1079
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>gb|L16507.1|PIGFORM Sus scrofa formiminotransferase-cyclodeaminase mRNA, complete cds
          Length = 1843

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 325  agcccgcccccggggccgccg 345
            |||||||||||||||||||||
Sbjct: 1099 agcccgcccccggggccgccg 1079
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>gb|CP000031.1| Silicibacter pomeroyi DSS-3, complete genome
          Length = 4109442

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 383    ctcggtgaccgggcgcacctcggc 406
              |||| |||||||||||||||||||
Sbjct: 976390 ctcgatgaccgggcgcacctcggc 976367
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>gb|AC121851.4| Mus musculus chromosome 8 clone RP24-92F5, complete sequence
          Length = 184603

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 33     ttgcgaacattgatgggctg 52
              ||||||||||||||||||||
Sbjct: 127907 ttgcgaacattgatgggctg 127926
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>gb|DQ213674.1| Taeniopygia guttata clone 0058P0016A03 Traf and Tnf receptor
           associated protein-like mRNA, complete sequence
          Length = 1381

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 37  gaacattgatgggctggatc 56
           ||||||||||||||||||||
Sbjct: 275 gaacattgatgggctggatc 294
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>gb|CP000152.1| Burkholderia sp. 383 chromosome 2, complete sequence
          Length = 3587082

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 509     cggcgtcgcgttcatgtaga 528
               ||||||||||||||||||||
Sbjct: 2170327 cggcgtcgcgttcatgtaga 2170308
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>gb|CP000125.1| Burkholderia pseudomallei 1710b chromosome II, complete sequence
          Length = 3181762

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 509     cggcgtcgcgttcatgtaga 528
               ||||||||||||||||||||
Sbjct: 2300040 cggcgtcgcgttcatgtaga 2300059
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>gb|BC044759.2| Mus musculus progesterone receptor membrane component 2, mRNA (cDNA
            clone IMAGE:5061936), partial cds
          Length = 2951

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1580 atttttcttggaaaagaaaa 1561
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>ref|XM_543948.2| PREDICTED: Canis familiaris similar to GSK-3 binding protein FRAT1
           (LOC486819), mRNA
          Length = 708

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 329 cgcccccggggccgccgcctcagc 352
           ||||||||||||||||||| ||||
Sbjct: 230 cgcccccggggccgccgccgcagc 253
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>ref|XM_987808.1| PREDICTED: Mus musculus progesterone receptor membrane component 2
            (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>ref|XM_130859.8| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 1 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>ref|XM_911696.2| PREDICTED: Mus musculus progesterone receptor membrane component 2,
            transcript variant 3 (Pgrmc2), mRNA
          Length = 3017

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1649 atttttcttggaaaagaaaa 1630
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>gb|AC102769.11| Mus musculus chromosome 17, clone RP23-89A3, complete sequence
          Length = 162417

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 56     cgtggtctataaacacacagaata 79
              |||||| |||||||||||||||||
Sbjct: 105757 cgtggtatataaacacacagaata 105734
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>gb|AC124434.3| Mus musculus BAC clone RP24-250K22 from chromosome 8, complete sequence
          Length = 167741

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 33    ttgcgaacattgatgggctg 52
             ||||||||||||||||||||
Sbjct: 55387 ttgcgaacattgatgggctg 55406
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>gb|AC146133.3| Pan troglodytes BAC clone RP43-38C10 from 7, complete sequence
          Length = 168763

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 109    gaatcatacggaatcatcat 128
              ||||||||||||||||||||
Sbjct: 143265 gaatcatacggaatcatcat 143284
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>gb|AC006044.2| Homo sapiens BAC clone RP11-539B24 from 7, complete sequence
          Length = 141509

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 247   ctcatgcatgagccatgcat 266
             ||||||||||||||||||||
Sbjct: 65253 ctcatgcatgagccatgcat 65234
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>gb|AC100511.12| Mus musculus chromosome 3, clone RP23-144N19, complete sequence
          Length = 200790

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 196   atttttcttggaaaagaaaa 215
             ||||||||||||||||||||
Sbjct: 40220 atttttcttggaaaagaaaa 40239
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>gb|AC117573.9| Mus musculus chromosome 3, clone RP23-30D1, complete sequence
          Length = 239439

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 140    tttgttttacatacatacag 159
              ||||||||||||||||||||
Sbjct: 216401 tttgttttacatacatacag 216382
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>emb|AL356953.17| Human DNA sequence from clone RP11-572A16 on chromosome 1 Contains the
             3' end of a pseudogene similar to Mus musculus protein
             tyrosine phosphatase receptor type V Ptprv, the LGR6 gene
             for leucine-rich repeat-containing G protein-coupled
             receptor 6, the gene for a ubiquitin conjugating enzyme,
             the 5' end of the PPP1R12B gene for protein phosphatase 1
             regulatory (inhibitor) subunit 12B and four CpG islands,
             complete sequence
          Length = 177344

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 327   cccgcccccggggccgccgc 346
             ||||||||||||||||||||
Sbjct: 31515 cccgcccccggggccgccgc 31534
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>gb|AC116459.8| Mus musculus, clone RP23-35F4, complete sequence
          Length = 215030

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 140   tttgttttacatacatacag 159
             ||||||||||||||||||||
Sbjct: 25848 tttgttttacatacatacag 25829
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>gb|AF542968.1| Triticum aestivum myo-inositol 1-phosphate synthase-like mRNA,
           partial sequence
          Length = 819

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 ttgatcacgacgacgtggtc 454
           ||||||||||||||||||||
Sbjct: 377 ttgatcacgacgacgtggtc 358
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>emb|AL022149.2|HS122K23 Human DNA sequence from clone RP1-122K23 on chromosome Xq21.21-22.1,
             complete sequence
          Length = 122777

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   gaatattatttttcttggaa 208
             ||||||||||||||||||||
Sbjct: 58941 gaatattatttttcttggaa 58922
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>gb|BT009043.1| Triticum aestivum clone wdk5c.pk006.i16:fis, full insert mRNA
           sequence
          Length = 790

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 435 ttgatcacgacgacgtggtc 454
           ||||||||||||||||||||
Sbjct: 54  ttgatcacgacgacgtggtc 35
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>emb|BX571966.1| Burkholderia pseudomallei strain K96243, chromosome 2, complete sequence
          Length = 3173005

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 509    cggcgtcgcgttcatgtaga 528
              ||||||||||||||||||||
Sbjct: 461518 cggcgtcgcgttcatgtaga 461537
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>gb|AC127387.3| Homo sapiens BAC clone RP11-28J3 from UL, complete sequence
          Length = 47702

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 109   gaatcatacggaatcatcat 128
             ||||||||||||||||||||
Sbjct: 18340 gaatcatacggaatcatcat 18321
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>dbj|AK140064.1| Mus musculus adult male corpora quadrigemina cDNA, RIKEN full-length
            enriched library, clone:B230117D02 product:progesterone
            receptor membrane component 2, full insert sequence
          Length = 2972

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1619 atttttcttggaaaagaaaa 1600
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>dbj|AK165560.1| Mus musculus brain CRL-1443 BC3H1 cDNA, RIKEN full-length enriched
           library, clone:G430007N18 product:progesterone receptor
           membrane component 2, full insert sequence
          Length = 1019

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 196 atttttcttggaaaagaaaa 215
           ||||||||||||||||||||
Sbjct: 822 atttttcttggaaaagaaaa 803
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>gb|CP000011.2| Burkholderia mallei ATCC 23344 chromosome 2, complete sequence
          Length = 2325379

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 509     cggcgtcgcgttcatgtaga 528
               ||||||||||||||||||||
Sbjct: 1527026 cggcgtcgcgttcatgtaga 1527007
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>dbj|AK014543.1| Mus musculus 0 day neonate skin cDNA, RIKEN full-length enriched
            library, clone:4631434O19 product:MEMBRANE ASSOCIATED
            PROGESTERONE RECEPTOR COMPONENT 2 (PROGESTERONE MEMBRANE
            BINDING PROTEIN) (STEROID RECEPTOR PROTEIN DG6) homolog
            [Homo sapiens], full insert sequence
          Length = 2558

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 196  atttttcttggaaaagaaaa 215
            ||||||||||||||||||||
Sbjct: 1538 atttttcttggaaaagaaaa 1519
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>gb|AC007600.6| Homo sapiens chromosome 16 clone RP11-264A16, complete sequence
          Length = 183088

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   ttttcttggaaaagaaaaac 217
             ||||||||||||||||||||
Sbjct: 27202 ttttcttggaaaagaaaaac 27183
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>gb|AC147274.3| Pan troglodytes BAC clone RP43-113D16 from chromosome 7, complete
              sequence
          Length = 168606

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 191    atattatttttcttggaaaagaaa 214
              |||||||||||||| |||||||||
Sbjct: 164789 atattatttttctttgaaaagaaa 164812
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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 319     gggcaaagcccgcccccggggccg 342
               ||||||||||||||||||| ||||
Sbjct: 2551700 gggcaaagcccgcccccggcgccg 2551677
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>emb|BX842238.2| Mouse DNA sequence from clone RP24-159M2 on chromosome 2, complete
             sequence
          Length = 86221

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 471   catgcctctttcccctcctt 490
             ||||||||||||||||||||
Sbjct: 77280 catgcctctttcccctcctt 77261
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>gb|CP000085.1| Burkholderia thailandensis E264 chromosome II, complete sequence
          Length = 2914771

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 509     cggcgtcgcgttcatgtaga 528
               ||||||||||||||||||||
Sbjct: 2522300 cggcgtcgcgttcatgtaga 2522281
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>gb|AE000513.1| Deinococcus radiodurans R1 chromosome 1, complete sequence
          Length = 2648638

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 412     agctcttgtcggccttgccg 431
               ||||||||||||||||||||
Sbjct: 2085171 agctcttgtcggccttgccg 2085152
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>gb|AF056325.1|AF056325 Hordeum vulgare myo-inositol 1-phosphate synthase mRNA, complete cds
          Length = 2152

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 435  ttgatcacgacgacgtggtc 454
            ||||||||||||||||||||
Sbjct: 1302 ttgatcacgacgacgtggtc 1283
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>emb|CT025641.10| Mouse DNA sequence from clone RP24-322A17 on chromosome 17, complete
             sequence
          Length = 122522

 Score = 40.1 bits (20), Expect = 7.4
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 56    cgtggtctataaacacacagaata 79
             |||||| |||||||||||||||||
Sbjct: 23715 cgtggtatataaacacacagaata 23692


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,311,272
Number of Sequences: 3902068
Number of extensions: 5311272
Number of successful extensions: 109240
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 108586
Number of HSP's gapped (non-prelim): 654
length of query: 545
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 522
effective length of database: 17,143,297,704
effective search space: 8948801401488
effective search space used: 8948801401488
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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