Clone Information

BLAST Search Result

Clone Name	rbah62b19
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondri...	100	2e-21
2	GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondri...	97	2e-20
3	GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochond...	90	2e-18
4	GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochond...	89	5e-18
5	GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial...	89	5e-18
6	GLYM_HUMAN (P34897) Serine hydroxymethyltransferase, mitochondri...	37	0.014
7	ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation fa...	34	0.12
8	ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation ...	33	0.20
9	ARD1_HUMAN (P36406) GTP-binding protein ARD-1 (ADP-ribosylation ...	33	0.20
10	GLYM_RABIT (P14519) Serine hydroxymethyltransferase, mitochondri...	33	0.34
11	TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-a...	31	0.99
12	HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)	31	0.99
13	ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) ...	29	3.7
14	ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) ...	29	3.7
15	ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) ...	29	3.7
16	SNAP_DROME (Q23983) Soluble NSF attachment protein (SNAP) (N-eth...	29	3.7
17	NU4C_PSINU (Q8WHX8) NAD(P)H-quinone oxidoreductase chain 4, chlo...	29	3.7
18	ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) ...	29	3.7
19	VGLG_HRSV3 (P27022) Major surface glycoprotein G (Attachment gly...	29	3.7
20	VGLG_HRSV2 (P27021) Major surface glycoprotein G (Attachment gly...	29	3.7
21	MYO5A_RAT (Q9QYF3) Myosin-5A (Myosin Va) (Dilute myosin heavy ch...	29	4.9
22	VGLG_HRSVL (P20895) Major surface glycoprotein G (Attachment gly...	29	4.9
23	VGLG_HRSVA (P03423) Major surface glycoprotein G (Attachment gly...	29	4.9
24	VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment gly...	29	4.9
25	VGLG_HRSV6 (P27025) Major surface glycoprotein G (Attachment gly...	29	4.9
26	VGLG_HRSV4 (P27023) Major surface glycoprotein G (Attachment gly...	29	4.9
27	GLYC_RABIT (P07511) Serine hydroxymethyltransferase, cytosolic (...	28	6.4
28	TILS_HAEDU (Q7VPN7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-) (tR...	28	6.4
29	VGLG_HRSV8 (P23041) Major surface glycoprotein G (Attachment gly...	28	8.3
30	VGLG_HRSV1 (P20896) Major surface glycoprotein G (Attachment gly...	28	8.3
31	SOX4_MOUSE (Q06831) Transcription factor SOX-4	28	8.3
32	ARF5_RAT (P84083) ADP-ribosylation factor 5	28	8.3
33	ARF5_MOUSE (P84084) ADP-ribosylation factor 5	28	8.3
34	ARF5_HUMAN (P84085) ADP-ribosylation factor 5	28	8.3
35	ARF5_CHICK (P49702) ADP-ribosylation factor 5	28	8.3
36	ARF4_XENLA (P51644) ADP-ribosylation factor 4	28	8.3
37	ARF4_RAT (P61751) ADP-ribosylation factor 4	28	8.3
38	ARF4_PONPY (Q5RCF1) ADP-ribosylation factor 4	28	8.3
39	ARF4_MOUSE (P61750) ADP-ribosylation factor 4	28	8.3
40	ARF4_HUMAN (P18085) ADP-ribosylation factor 4	28	8.3
41	ARF2_DROME (P40945) ADP-ribosylation factor 2 (dARF II)	28	8.3

>GLYM_SOLTU (P50433) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 518

 Score =  100 bits (248), Expect = 2e-21
 Identities = 49/70 (70%), Positives = 55/70 (78%)
 Frame = -3

Query: 412 KVAEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           KVA+FFD+             GTKLKDFVATL+S + I++EIAKLRHDVEEYAKQFPTIG
Sbjct: 449 KVADFFDAAVKIAVKVKAETQGTKLKDFVATLESSAPIKSEIAKLRHDVEEYAKQFPTIG 508

Query: 232 FEKETMKYKN 203
           FEKETMKYKN
Sbjct: 509 FEKETMKYKN 518

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>GLYM_ARATH (Q9SZJ5) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 46/70 (65%), Positives = 53/70 (75%)
 Frame = -3

Query: 412 KVAEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           KVAE+FD              GTKLKDFV+ ++S S IQ+EIAKLRH+VEE+AKQFPTIG
Sbjct: 448 KVAEYFDKAVTIALKVKSEAQGTKLKDFVSAMESSSTIQSEIAKLRHEVEEFAKQFPTIG 507

Query: 232 FEKETMKYKN 203
           FEKETMKYKN
Sbjct: 508 FEKETMKYKN 517

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>GLYM_FLAPR (P49357) Serine hydroxymethyltransferase 1, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 89.7 bits (221), Expect = 2e-18
 Identities = 47/70 (67%), Positives = 51/70 (72%)
 Frame = -3

Query: 412 KVAEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           KVA FFD              GTKLKDFV  ++S S IQ+EI+KLRHDVEEYAKQFPTIG
Sbjct: 449 KVAYFFDLAVKLAVKIKGEAKGTKLKDFVTAMES-SAIQSEISKLRHDVEEYAKQFPTIG 507

Query: 232 FEKETMKYKN 203
           FEKETMKYKN
Sbjct: 508 FEKETMKYKN 517

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>GLYN_FLAPR (P49358) Serine hydroxymethyltransferase 2, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 517

 Score = 88.6 bits (218), Expect = 5e-18
 Identities = 47/70 (67%), Positives = 50/70 (71%)
 Frame = -3

Query: 412 KVAEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           KVA  FD              GTKLKDFVA +QS S  Q+EI+KLRHDVEEYAKQFPTIG
Sbjct: 449 KVAYLFDLAVKLAVKIKGEAQGTKLKDFVAAMQS-SAFQSEISKLRHDVEEYAKQFPTIG 507

Query: 232 FEKETMKYKN 203
           FEKETMKYKN
Sbjct: 508 FEKETMKYKN 517

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>GLYM_PEA (P34899) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 518

 Score = 88.6 bits (218), Expect = 5e-18
 Identities = 42/68 (61%), Positives = 50/68 (73%)
 Frame = -3

Query: 412 KVAEFFDSXXXXXXXXXXXXAGTKLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           KVAE+FD+             GTKLKDFV  LQ+ S +Q+EI+KL+HDVEE+AKQFPTIG
Sbjct: 449 KVAEYFDAAVSLALKVKAESKGTKLKDFVEALQTSSYVQSEISKLKHDVEEFAKQFPTIG 508

Query: 232 FEKETMKY 209
           FEK TMKY
Sbjct: 509 FEKATMKY 516

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>GLYM_HUMAN (P34897) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 504

 Score = 37.4 bits (85), Expect = 0.014
 Identities = 17/40 (42%), Positives = 25/40 (62%)
 Frame = -3

Query: 343 KLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGFEK 224
           KL+DF + L  DS     +A LR  VE++A+ FP  GF++
Sbjct: 464 KLQDFKSFLLKDSETSQRLANLRQRVEQFARAFPMPGFDE 503

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>ARD1_RAT (P36407) GTP-binding protein ARD-1 (ADP-ribosylation factor domain|
           protein 1) (Tripartite motif protein 23) (Fragment)
          Length = 554

 Score = 34.3 bits (77), Expect = 0.12
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYKN*ALLCFNSKE 173
           G K++  V TL  D   +  I  KL+ D  E+ +  PTIGF  ET++YKN   L F   +
Sbjct: 380 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 434

Query: 172 ANRKH 158
              KH
Sbjct: 435 VGEKH 439

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>ARD1_MOUSE (Q8BGX0) GTP-binding protein ARD-1 (ADP-ribosylation factor domain|
           protein 1) (Tripartite motif protein 23)
          Length = 574

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYKN*ALLCFNSKE 173
           G K++  V TL  D   +  I  KL+ D  E+ +  PTIGF  ET++YKN   L F   +
Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454

Query: 172 ANRKH 158
              KH
Sbjct: 455 VGGKH 459

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>ARD1_HUMAN (P36406) GTP-binding protein ARD-1 (ADP-ribosylation factor domain|
           protein 1) (Tripartite motif protein 23) (RING finger
           protein 46)
          Length = 574

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 25/65 (38%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
 Frame = -3

Query: 349 GTKLKDFVATLQSDSNIQAEIA-KLRHDVEEYAKQFPTIGFEKETMKYKN*ALLCFNSKE 173
           G K++  V TL  D   +  I  KL+ D  E+ +  PTIGF  ET++YKN   L F   +
Sbjct: 400 GPKMEIRVVTLGLDGAGKTTILFKLKQD--EFMQPIPTIGFNVETVEYKN---LKFTIWD 454

Query: 172 ANRKH 158
              KH
Sbjct: 455 VGGKH 459

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>GLYM_RABIT (P14519) Serine hydroxymethyltransferase, mitochondrial precursor|
           (EC 2.1.2.1) (Serine methylase) (Glycine
           hydroxymethyltransferase) (SHMT)
          Length = 504

 Score = 32.7 bits (73), Expect = 0.34
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 343 KLKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIGF 230
           KL+DF + L  D      +A LR  V+++A+ FP  GF
Sbjct: 464 KLQDFKSFLLKDPETSQHLADLRRRVQQFARAFPMPGF 501

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>TEP1_HUMAN (Q99973) Telomerase protein component 1 (Telomerase-associated|
           protein 1) (Telomerase protein 1) (p240) (p80 telomerase
           homolog)
          Length = 2627

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 23/81 (28%), Positives = 30/81 (37%)
 Frame = +3

Query: 165 LFASLLLKHSSA*FLYFMVSFSNPIVGNCFAYSSTSWRSFAISAWMLLSDCKVATKSFSL 344
           LF SL + H +   LY + +       NC      SWR+   S  + LS C +A KS S 
Sbjct: 127 LFQSLQISHMTQADLYRVNN------SNCLLSEPPSWRAQHFSKGLDLSTCPIALKSISA 180

Query: 345 VPXXXXXXXXXXXXXESKNSA 407
                          E K  A
Sbjct: 181 TETAQEATLGRWFDSEEKKGA 201

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>HST6_CANAL (P53706) ATP-dependent permease HST6 (STE6 homolog)|
          Length = 1323

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 16/49 (32%), Positives = 27/49 (55%)
 Frame = +2

Query: 257 IFLHIVAKLCNFSLDVAVGLQSGNKVLQFGTCCCSFNLQSQVHCRIEEF 403
           +F +  +KL + SLD ++GL S  K+LQ+     S  + + V   + EF
Sbjct: 694 VFSYCFSKLLSTSLDSSIGLNSTQKILQWSCISLSIAIFTGVTSYLSEF 742

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>ATRX_PONPY (Q7YQM3) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked helicase II) (X-linked nuclear
            protein) (XNP)
          Length = 2492

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247  IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 336
            +V+ + PH+ + +QF   CCC  + K ++SP
Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586

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>ATRX_PANTR (Q7YQM4) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked helicase II) (X-linked nuclear
            protein) (XNP)
          Length = 2492

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247  IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 336
            +V+ + PH+ + +QF   CCC  + K ++SP
Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586

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>ATRX_HUMAN (P46100) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked helicase II) (X-linked nuclear
            protein) (XNP) (Znf-HX)
          Length = 2492

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247  IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 336
            +V+ + PH+ + +QF   CCC  + K ++SP
Sbjct: 1556 MVIKLKPHQVDGVQFMWDCCCESVKKTKKSP 1586

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>SNAP_DROME (Q23983) Soluble NSF attachment protein (SNAP)|
           (N-ethylmaleimide-sensitive factor attachment protein)
          Length = 292

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 12/46 (26%), Positives = 28/46 (60%)
 Frame = -3

Query: 304 NIQAEIAKLRHDVEEYAKQFPTIGFEKETMKYKN*ALLCFNSKEAN 167
           ++  ++   +H +E+YA+Q+P     +++ ++K   +LC N +E N
Sbjct: 211 HLSVDLLNAQHAIEKYAQQYPAF---QDSREFKLIKVLCENLEEQN 253

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>NU4C_PSINU (Q8WHX8) NAD(P)H-quinone oxidoreductase chain 4, chloroplast (EC|
           1.6.5.-) (NAD(P)H dehydrogenase, chain 4)
           (NADH-plastoquinone oxidoreductase chain 4)
          Length = 498

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 1/68 (1%)
 Frame = +3

Query: 114 RFIMDLLFTWTCPQLCFLFASLLLKHSSA*FLYF-MVSFSNPIVGNCFAYSSTSWRSFAI 290
           R  M+LL     P   FLF+ LL+   +    Y  ++SFS P +    AYSS S   F I
Sbjct: 263 RINMELL-----PHAHFLFSPLLVTMGAVQIAYASLISFSLPNIKRRIAYSSVSHMGFVI 317

Query: 291 SAWMLLSD 314
                ++D
Sbjct: 318 IGISSITD 325

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>ATRX_MOUSE (Q61687) Transcriptional regulator ATRX (EC 3.6.1.-) (ATP-dependent|
            helicase ATRX) (X-linked nuclear protein)
            (Heterochromatin protein 2) (HP1 alpha-interacting
            protein) (HP1-BP38 protein)
          Length = 2476

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = +1

Query: 247  IVLHIPPHRGEALQFQLGCCCR-IAKWQQSP 336
            +V+ + PH+ + +QF   CCC  + K ++SP
Sbjct: 1541 MVIKLKPHQVDGVQFMWDCCCESVEKTKKSP 1571

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>VGLG_HRSV3 (P27022) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 222
           HF +    P   C  +P C  ICK IPN +  +R
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKR 197

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>VGLG_HRSV2 (P27021) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 222
           HF +    P   C  +P C  ICK IPN +  +R
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKKPGKR 197

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>MYO5A_RAT (Q9QYF3) Myosin-5A (Myosin Va) (Dilute myosin heavy chain,|
            non-muscle)
          Length = 1828

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
 Frame = -3

Query: 304  NIQAEIAKLRHDVEEYAKQFPTIGFEKETMKYKN*A-LLCFNSKEANRKHN*GQVHVNNR 128
            ++Q EIAKLR D+E+   +  +I  E+   KYK     L  N KE N         +   
Sbjct: 987  SLQEEIAKLRKDLEQTRSEKKSI--EERADKYKQETEQLVSNLKEEN-------TLLKQE 1037

Query: 127  SMMKRHLM*KESKHFTE 77
                 HLM +++K  TE
Sbjct: 1038 KETLNHLMVEQAKEMTE 1054

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>VGLG_HRSVL (P20895) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 298

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 234
           HF +    P   C  +P C  ICK IPN +
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193

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>VGLG_HRSVA (P03423) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 298

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 234
           HF +    P   C  +P C  ICK IPN +
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193

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>VGLG_HRSV7 (P27026) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 234
           HF +    P   C  +P C  ICK IPN +
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193

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>VGLG_HRSV6 (P27025) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 234
           HF +    P   C  +P C  ICK IPN +
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193

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>VGLG_HRSV4 (P27023) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 297

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNR 234
           HF +    P   C  +P C  ICK IPN +
Sbjct: 164 HFEVFNFVPCSICSNNPTCWAICKRIPNKK 193

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>GLYC_RABIT (P07511) Serine hydroxymethyltransferase, cytosolic (EC 2.1.2.1)|
           (Serine methylase) (Glycine hydroxymethyltransferase)
           (SHMT)
          Length = 483

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -3

Query: 340 LKDFVATLQSDSNIQAEIAKLRHDVEEYAKQFPTIG 233
           LK+F   L  D   Q  +  LR +VE +A  FP  G
Sbjct: 444 LKEFKEKLAGDEKHQRAVRALRQEVESFAALFPLPG 479

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>TILS_HAEDU (Q7VPN7) tRNA(Ile)-lysidine synthase (EC 6.3.4.-)|
           (tRNA(Ile)-lysidine synthetase)
           (tRNA(Ile)-2-lysyl-cytidine synthase)
          Length = 428

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
 Frame = +2

Query: 146 LSSVVLPVCFLAVETQQCLVLVLHGLFLESDCWELFCIFL----HIVAKLCNFSLDVAVG 313
           + SVVL   F    T    + + HGL   +D W  FC  L    +I   L   ++D + G
Sbjct: 28  IDSVVLLDLFSRTTTPLRAIYIHHGLSANADNWADFCEALCKQYNIPFILQKVTVDKSTG 87

Query: 314 LQSGNKVLQF 343
           +++G +  ++
Sbjct: 88  IEAGARTARY 97

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>VGLG_HRSV8 (P23041) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 292

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 222
           HF +    P   C  +  C  ICKTIP+N+ +++
Sbjct: 164 HFEVFNFVPCSICGNNQLCKSICKTIPSNKPKKK 197

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>VGLG_HRSV1 (P20896) Major surface glycoprotein G (Attachment glycoprotein G)|
          Length = 292

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 323 HFAIRQQHPS*NCKASPRCGGICKTIPNNRIRER 222
           HF +    P   C  +  C  ICKTIP+N+ +++
Sbjct: 164 HFEVFNFVPCSICGNNQLCKSICKTIPSNKPKKK 197

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>SOX4_MOUSE (Q06831) Transcription factor SOX-4|
          Length = 440

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 16/50 (32%), Positives = 22/50 (44%)
 Frame = -1

Query: 345 PN*RTLLPLCNPTATSKLKLQSFATMWRNMQNNSQQSDSRKRP*STRTKH 196
           P    LLPL  PTA  K++    AT   +   +S  +   K P   + KH
Sbjct: 214 PEQAALLPLGEPTAVYKVRTPQLATPAASSSPSSALATPAKHPADKKVKH 263

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>ARF5_RAT (P84083) ADP-ribosylation factor 5|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF5_MOUSE (P84084) ADP-ribosylation factor 5|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF5_HUMAN (P84085) ADP-ribosylation factor 5|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF5_CHICK (P49702) ADP-ribosylation factor 5|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF4_XENLA (P51644) ADP-ribosylation factor 4|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF4_RAT (P61751) ADP-ribosylation factor 4|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF4_PONPY (Q5RCF1) ADP-ribosylation factor 4|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF4_MOUSE (P61750) ADP-ribosylation factor 4|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF4_HUMAN (P18085) ADP-ribosylation factor 4|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62

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>ARF2_DROME (P40945) ADP-ribosylation factor 2 (dARF II)|
          Length = 179

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 262 EYAKQFPTIGFEKETMKYKN*ALLCF 185
           E     PTIGF  ET++YKN   +CF
Sbjct: 40  EIVTTIPTIGFNVETVEYKN---ICF 62


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,114,330
Number of Sequences: 219361
Number of extensions: 1120649
Number of successful extensions: 3365
Number of sequences better than 10.0: 41
Number of HSP's better than 10.0 without gapping: 3282
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3363
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result