Clone Name | rbah61m19 |
---|---|
Clone Library Name | barley_pub |
>gb|AC135418.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0035J16, complete sequence Length = 170233 Score = 147 bits (74), Expect = 4e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 313 aaaatcactgggaagaaatgaatctggccttcgggttttgtttgggtctctttgaagtaa 372 |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct: 69447 aaaatcacagggaagaaatgaatttgcccttcgggttttgtttgggtctccttgaaataa 69506 Query: 373 acaaggataggaaattgtggccaccatagttcccagttcacaaaggttgagtac 426 || | ||||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 69507 accaagataggaaattgtggccaccacagttcccaattcacaaatgttgagtac 69560 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 428 tccaacggttcttgccaccaacaaatacgttctcacctgactcctgcagctgattgccca 487 ||||||| ||||||||||| |||||||| || ||||||||||||| | ||||| ||||| Sbjct: 69800 tccaacgattcttgccaccgacaaatacattttcacctgactcctctaactgatcgccca 69859 Query: 488 ctttcacttcc 498 ||||||||||| Sbjct: 69860 ctttcacttcc 69870 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 259 gtttccgacggtccagcacgctccaccataatatcatagagttgtcggcc 308 |||||||| ||||||||||||||||||||| |||||| || |||||||| Sbjct: 69317 gtttccgaaggtccagcacgctccaccatagcatcataaagctgtcggcc 69366
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 147 bits (74), Expect = 4e-32 Identities = 104/114 (91%) Strand = Plus / Plus Query: 313 aaaatcactgggaagaaatgaatctggccttcgggttttgtttgggtctctttgaagtaa 372 |||||||| |||||||||||||| || ||||||||||||||||||||||| ||||| ||| Sbjct: 19366098 aaaatcacagggaagaaatgaatttgcccttcgggttttgtttgggtctccttgaaataa 19366157 Query: 373 acaaggataggaaattgtggccaccatagttcccagttcacaaaggttgagtac 426 || | ||||||||||||||||||||| |||||||| |||||||| ||||||||| Sbjct: 19366158 accaagataggaaattgtggccaccacagttcccaattcacaaatgttgagtac 19366211 Score = 77.8 bits (39), Expect = 3e-11 Identities = 63/71 (88%) Strand = Plus / Plus Query: 428 tccaacggttcttgccaccaacaaatacgttctcacctgactcctgcagctgattgccca 487 ||||||| ||||||||||| |||||||| || ||||||||||||| | ||||| ||||| Sbjct: 19366451 tccaacgattcttgccaccgacaaatacattttcacctgactcctctaactgatcgccca 19366510 Query: 488 ctttcacttcc 498 ||||||||||| Sbjct: 19366511 ctttcacttcc 19366521 Score = 60.0 bits (30), Expect = 7e-06 Identities = 45/50 (90%) Strand = Plus / Plus Query: 259 gtttccgacggtccagcacgctccaccataatatcatagagttgtcggcc 308 |||||||| ||||||||||||||||||||| |||||| || |||||||| Sbjct: 19365968 gtttccgaaggtccagcacgctccaccatagcatcataaagctgtcggcc 19366017 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||||||||||||||||||| | |||||| Sbjct: 7033735 ccgtagcaacgcacgggcattcaactagt 7033707
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagttg 131 ||||||||||||||||||| ||||||||||| Sbjct: 1824468 ccgtagcaacgcacgggcaccctactagttg 1824498 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 10394861 ccgtagcaacgcacgggcat 10394880
>dbj|AP005563.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1227_D07 Length = 118358 Score = 54.0 bits (27), Expect = 5e-04 Identities = 30/31 (96%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagttg 131 ||||||||||||||||||| ||||||||||| Sbjct: 63130 ccgtagcaacgcacgggcaccctactagttg 63160
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 3497326 ccgtagcaacgcacgggcaccctactagtt 3497297 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 14625437 ccgtagcaacgcacgggcaccctactagt 14625409 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 8733067 ccgtagcaacgcacgggcaccctactagt 8733039 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 3308119 ccgtagcaacgcacgggcaccctactagt 3308091 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 27637223 gtagcaacgcacgggcaccctactagt 27637197
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 26054447 ccgtagcaacgcacgggcaccctactagtt 26054418
>dbj|AP002910.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0707D10 Length = 172003 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 150514 ccgtagcaacgcacgggcaccctactagtt 150485
>dbj|AP003234.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0038D11 Length = 156465 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 58022 ccgtagcaacgcacgggcaccctactagtt 57993
>dbj|AP004664.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0428D12 Length = 141678 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 137146 ccgtagcaacgcacgggcaccctactagtt 137117
>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0039H02 Length = 169162 Score = 52.0 bits (26), Expect = 0.002 Identities = 29/30 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||||| |||||||||| Sbjct: 35276 ccgtagcaacgcacgggcaccctactagtt 35247
>gb|AC078839.4| Oryza sativa (japonica cultivar-group) chromosome X clone OSJNBa0094J09, complete sequence Length = 168192 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 136830 ccgtagcaacgcacgggcaccctactagt 136858
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 6142845 ccgtagcaacgcacgggcaccctactagt 6142817 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ggaacggaggaagtattaat 31 |||||||||||||||||||| Sbjct: 22392138 ggaacggaggaagtattaat 22392157
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 12337674 ccgtagcaacgcacgggcaccctactagt 12337702 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 2952445 ccgtagcaacgcacgggcat 2952426
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 6142058 ccgtagcaacgcacgggcaccctactagt 6142030 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 12 ggaacggaggaagtattaat 31 |||||||||||||||||||| Sbjct: 22385167 ggaacggaggaagtattaat 22385186
>gb|AC105732.3| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0090D11, complete sequence Length = 174865 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 136321 ccgtagcaacgcacgggcaccctactagt 136293
>dbj|AP005768.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0039C01 Length = 151054 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 91708 ccgtagcaacgcacgggcaccctactagt 91680
>dbj|AP005783.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0095H08 Length = 140777 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 138702 ccgtagcaacgcacgggcaccctactagt 138674
>dbj|AP005101.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0026I22 Length = 143302 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 18435 ccgtagcaacgcacgggcaccctactagt 18407
>dbj|AP003847.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1714_H10 Length = 191580 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 117812 ccgtagcaacgcacgggcaccctactagt 117784
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 50.1 bits (25), Expect = 0.007 Identities = 28/29 (96%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 ||||||||||||||||||| ||||||||| Sbjct: 12345014 ccgtagcaacgcacgggcaccctactagt 12345042 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 2952366 ccgtagcaacgcacgggcat 2952347
>emb|CR626929.1| Triticum aestivum Length = 20745 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagttga 132 |||||||||||||||||||| |||||||||| Sbjct: 9800 ccgtagcaacgcacgggcattttactagttga 9769
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||| |||||||||| Sbjct: 13465904 gtagcaacgcacgggcaccctactagtt 13465877 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 100 tccgtagcaacgcacgggcatcctactagtt 130 |||||||||||||||||||| || ||||||| Sbjct: 15805197 tccgtagcaacgcacgggcacccgactagtt 15805167 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 21757180 ccgttgcaacgcacgggcatcatactagt 21757208
>dbj|AP004177.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1116_E03 Length = 126845 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagtt 130 ||||||||||||||||| |||||||||| Sbjct: 51833 gtagcaacgcacgggcaccctactagtt 51806
>gb|AY664413.1| Zea mays cultivar B73 locus 9002, complete sequence Length = 317137 Score = 48.1 bits (24), Expect = 0.028 Identities = 30/32 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagttga 132 |||||||||||||||||||| | ||||||||| Sbjct: 199759 ccgtagcaacgcacgggcattcaactagttga 199790
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 24826735 gtagcaacgcacgggcaccctactagt 24826761 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 4046684 gtagcaacgcacgggcaccctactagt 4046658 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 575224 ccgtagcaacgcacgggcat 575243
>dbj|AP005184.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0047B07 Length = 157797 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 94216 gtagcaacgcacgggcaccctactagt 94190
>dbj|AP003833.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1477_F01 Length = 158792 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 16325 gtagcaacgcacgggcaccctactagt 16299
>dbj|AP004850.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1342_D02 Length = 125460 Score = 46.1 bits (23), Expect = 0.11 Identities = 29/31 (93%) Strand = Plus / Minus Query: 100 tccgtagcaacgcacgggcatcctactagtt 130 |||||||||||||||||||| || ||||||| Sbjct: 63137 tccgtagcaacgcacgggcacccgactagtt 63107
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 24754941 gtagcaacgcacgggcaccctactagt 24754967 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 4046671 gtagcaacgcacgggcaccctactagt 4046645 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 575224 ccgtagcaacgcacgggcat 575243
>emb|AL954829.6|CNS08CD5 Oryza sativa chromosome 12, . BAC OSJNBa0044E20 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 140383 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Plus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 133892 gtagcaacgcacgggcaccctactagt 133918
>emb|AL731882.2|CNS08C8M Oryza sativa chromosome 12, . BAC OSJNBb0028H07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 132682 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 103 gtagcaacgcacgggcatcctactagt 129 ||||||||||||||||| ||||||||| Sbjct: 83105 gtagcaacgcacgggcaccctactagt 83079
>dbj|AP004547.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT31L24, TM0228a, complete sequence Length = 65103 Score = 44.1 bits (22), Expect = 0.44 Identities = 28/30 (93%) Strand = Plus / Minus Query: 2 cttatataaaggaacggaggaagtattaat 31 |||||||| ||||||||||| ||||||||| Sbjct: 56396 cttatatataggaacggagggagtattaat 56367
>dbj|AP004488.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT02F05, TM0020, complete sequence Length = 80920 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 2 cttatataaaggaacggaggaagtat 27 ||||||| |||||||||||||||||| Sbjct: 22683 cttatattaaggaacggaggaagtat 22658
>gb|AC150391.2| Branchiostoma floridae clone CH302-119J21, complete sequence Length = 157607 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 138 tttcttcaaataatgcatggagatt 162 ||||||||||||| ||||||||||| Sbjct: 107960 tttcttcaaataaagcatggagatt 107936
>gb|AY534123.1|SEG_AY534122S2 Aegilops tauschii transposons Caspar, XJ, Angela, and XJ, complete sequence; LRR protein WM1.7 (WM1.7) and LRR protein WM1.12 (WM1.12) genes, complete cds; transposons Ophelia2, Angela3s, and XJ3, complete sequence; LRR protein WM1.3 (WM1.3) gene, complete cds; Stowaway MITE, transposons XJ1, Jody, Angela, and XJ and Stowaway MITE, complete sequence; LRR protein WM1.2 (WM1.2) and LLR protein WM1.1 (WM1.1) genes, complete cds; transposons XJ, XA, Angela, and Fred and WM1.11 gene, complete sequence; RPM1-like sequence and LRR protein WM1.10 (WM1.10) genes, complete cds; and transposon XJ, complete sequence Length = 198649 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||| |||||||| Sbjct: 62807 ccgtggcaacgcacgggcattctactagt 62835
>gb|AC133608.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0085G12, complete sequence Length = 121470 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 22391 ccgttgcaacgcacgggcatcatactagt 22363
>gb|AC135121.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0089M05, complete sequence Length = 131308 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 123415 ccgttgcaacgcacgggcatcatactagt 123387
>gb|AC136226.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBb0067H15, complete sequence Length = 184316 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||||||||||||||||||| | |||||| Sbjct: 158658 ccgtagcaacgcacgggcattcaactagt 158630
>gb|AC169375.4| Sorghum bicolor clone SB_BBc0020O07, complete sequence Length = 117931 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 100 tccgtagcaacgcacgggcat 120 ||||||||||||||||||||| Sbjct: 104055 tccgtagcaacgcacgggcat 104035
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||||| |||||| Sbjct: 5882427 ccgttgcaacgcacgggcatccaactagt 5882455
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 16955669 ccgttgcaacgcacgggcatcatactagt 16955641 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 15531600 ccgtagcaacgcacgggcat 15531619
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||| ||||||||| Sbjct: 18138940 ccgttgcaacgcacgggcaccctactagt 18138912
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||||| |||||| Sbjct: 9820762 ccgttgcaacgcacgggcatccaactagt 9820734 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 1129803 ccgtagcaacgcacgggcat 1129822
>gb|AY182007.1| Monoblepharella sp. JEL15 mitochondrion, complete genome Length = 60432 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Plus Query: 200 gattttggctcctggaactta 220 ||||||||||||||||||||| Sbjct: 1134 gattttggctcctggaactta 1154 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 200 gattttggctcctggaactt 219 |||||||||||||||||||| Sbjct: 232 gattttggctcctggaactt 213
>dbj|AP005822.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0456E06 Length = 164353 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||||| |||||| Sbjct: 111004 ccgttgcaacgcacgggcatccaactagt 110976
>dbj|AP005695.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:OSJNBa0063H02 Length = 152326 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||||| |||||| Sbjct: 17397 ccgttgcaacgcacgggcatccaactagt 17369
>dbj|AP006069.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0025F02 Length = 156545 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 138577 ccgttgcaacgcacgggcatcatactagt 138605
>dbj|AP005835.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0008E01 Length = 156856 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 49579 ccgttgcaacgcacgggcatcatactagt 49607
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||||| ||||||| Sbjct: 17049436 ccgttgcaacgcacgggcatcatactagt 17049408 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 15619216 ccgtagcaacgcacgggcat 15619235
>emb|AL663018.4|OSJN00219 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0045O17, complete sequence Length = 137981 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| ||||||||||||||||| |||||| Sbjct: 25664 ccgttgcaacgcacgggcatccaactagt 25692
>dbj|AP006677.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT46E19, TM0371b, complete sequence Length = 67552 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 2 cttatataaaggaacggaggaagta 26 |||||||| |||||||||||||||| Sbjct: 42651 cttatatataggaacggaggaagta 42627
>dbj|AP005795.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1090H08 Length = 200720 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcatcctactagt 129 |||| |||||||||||||| ||||||||| Sbjct: 142736 ccgttgcaacgcacgggcaccctactagt 142708
>gb|AC107734.13| Mus musculus chromosome 7, clone RP23-399E4, complete sequence Length = 198485 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 347 gttttgtttgggtctctttg 366 |||||||||||||||||||| Sbjct: 160216 gttttgtttgggtctctttg 160235
>ref|XM_630278.1| Dictyostelium discoideum hypothetical protein (DDB0189286), partial mRNA Length = 4728 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 aacaattatttgattcatct 88 |||||||||||||||||||| Sbjct: 2744 aacaattatttgattcatct 2763
>gb|AC112953.15| Mus musculus chromosome 7, clone RP23-44J21, complete sequence Length = 205513 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 373 acaaggataggaaattgtgg 392 |||||||||||||||||||| Sbjct: 135797 acaaggataggaaattgtgg 135816
>gb|BT016304.1| Zea mays clone Contig137 mRNA sequence Length = 1191 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 1094 ccgtagcaacgcacgggcat 1075
>gb|AC137586.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0054A16, complete sequence Length = 164605 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 150080 ccgtagcaacgcacgggcat 150099
>gb|AC135512.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0057M06, complete sequence Length = 147673 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 37107 ccgtagcaacgcacgggcat 37126
>gb|AC097276.9| Oryza sativa chromosome 3 BAC OJ1519_A12 genomic sequence, complete sequence Length = 73070 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 12 ggaacggaggaagtattaat 31 |||||||||||||||||||| Sbjct: 20306 ggaacggaggaagtattaat 20287
>gb|AC122923.4| Mus musculus BAC clone RP23-36G5 from 10, complete sequence Length = 242112 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aaaatcactgggaagaaatg 332 |||||||||||||||||||| Sbjct: 62657 aaaatcactgggaagaaatg 62676
>gb|AC127319.4| Mus musculus BAC clone RP23-229N3 from 5, complete sequence Length = 188794 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 134 gtagtttcttcaaataatgcatgg 157 |||||||||| ||||||||||||| Sbjct: 39049 gtagtttcttaaaataatgcatgg 39072
>gb|AC124120.5| Mus musculus chromosome 1, clone RP24-64M13, complete sequence Length = 242227 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aacacacttaatgaagacac 195 |||||||||||||||||||| Sbjct: 160322 aacacacttaatgaagacac 160303
>gb|AC135604.29| Medicago truncatula clone mth2-32p10, complete sequence Length = 136735 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 11 aggaacggaggaagtattaa 30 |||||||||||||||||||| Sbjct: 18610 aggaacggaggaagtattaa 18629
>gb|AC144517.7| Medicago truncatula clone mth2-13k17, complete sequence Length = 107710 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaggaacggaggaagtatt 28 |||||||||||||||||||| Sbjct: 33721 aaaggaacggaggaagtatt 33702
>gb|AC146751.10| Medicago truncatula clone mth2-60a22, complete sequence Length = 119297 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 9 aaaggaacggaggaagtatt 28 |||||||||||||||||||| Sbjct: 16317 aaaggaacggaggaagtatt 16298
>emb|AL591804.5| Human DNA sequence from clone RP11-457O1 on chromosome X, complete sequence Length = 112366 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 37 tacatcatgttggatataca 56 |||||||||||||||||||| Sbjct: 60979 tacatcatgttggatataca 60998
>gb|AC161432.5| Mus musculus chromosome 1, clone RP23-453N14, complete sequence Length = 199303 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 176 aacacacttaatgaagacac 195 |||||||||||||||||||| Sbjct: 67457 aacacacttaatgaagacac 67438
>emb|AL645599.14| Mouse DNA sequence from clone RP23-285F4 on chromosome 11 Contains the 5' end of a novel gene, a ribosomal protein L7A (Rpl7a) pseudogene and a CpG island, complete sequence Length = 127405 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 481 ttgcccactttcacttccagggca 504 ||||||||||||||||||| |||| Sbjct: 82859 ttgcccactttcacttccatggca 82882
>emb|BX510946.18| Zebrafish DNA sequence from clone CH211-9F9 in linkage group 13, complete sequence Length = 103700 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagtagtttcttcaaataat 151 |||||||||||||||||||| Sbjct: 92683 aagtagtttcttcaaataat 92664
>gb|AC005185.1| Homo sapiens Xp22 BAC GSHB-383H3 (Genome Systems Human BAC Library) complete sequence Length = 124351 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 312 gaaaatcactgggaagaaat 331 |||||||||||||||||||| Sbjct: 86021 gaaaatcactgggaagaaat 86002
>emb|CR762498.10| Zebrafish DNA sequence from clone DKEY-4J1 in linkage group 13, complete sequence Length = 169361 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 aagtagtttcttcaaataat 151 |||||||||||||||||||| Sbjct: 83977 aagtagtttcttcaaataat 83958
>gb|AC090108.15| Homo sapiens 12q BAC RP11-395D5 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 168837 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 479 gattgcccactttcacttcc 498 |||||||||||||||||||| Sbjct: 55127 gattgcccactttcacttcc 55146
>gb|AC116364.2| Homo sapiens chromosome 5 clone RP11-767I1, complete sequence Length = 188887 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 tagttgaagtagtttcttca 145 |||||||||||||||||||| Sbjct: 67685 tagttgaagtagtttcttca 67704
>gb|AC019188.6| Homo sapiens BAC clone RP11-309H6 from 4, complete sequence Length = 207835 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 145 aaataatgcatggagatttc 164 |||||||||||||||||||| Sbjct: 134091 aaataatgcatggagatttc 134072
>gb|AC084884.2| Oryza sativa chromosome 10 clone OSJNBa0031A07, complete sequence Length = 134553 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 40867 ccgtagcaacgcacgggcat 40848
>gb|AC092331.2| Homo sapiens chromosome 5 clone RP11-163B12, complete sequence Length = 162153 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 tagttgaagtagtttcttca 145 |||||||||||||||||||| Sbjct: 129264 tagttgaagtagtttcttca 129245
>emb|CR388026.3| Mouse DNA sequence from clone RP23-39L16 on chromosome 2, complete sequence Length = 26069 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 336 ctggccttcgggttttgttt 355 |||||||||||||||||||| Sbjct: 22243 ctggccttcgggttttgttt 22262
>gb|AC158543.2| Mus musculus BAC clone RP23-425C23 from chromosome 13, complete sequence Length = 201777 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 agttgaagtagtttcttcaa 146 |||||||||||||||||||| Sbjct: 22763 agttgaagtagtttcttcaa 22744
>gb|AY627662.1| Sus scrofa microsatellite Ki 010 sequence Length = 525 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 33 aatatacatcatgttggata 52 |||||||||||||||||||| Sbjct: 106 aatatacatcatgttggata 125
>gb|AC158680.4| Mus musculus 6 BAC RP23-112F6 (Roswell Park Cancer Institute (C57BL/6J Female) Mouse BAC Library) complete sequence Length = 206705 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 311 tgaaaatcactgggaagaaatgaa 334 |||||||||||| ||||||||||| Sbjct: 120089 tgaaaatcactgagaagaaatgaa 120066
>gb|AC022345.2|AC022345 Drosophila melanogaster, chromosome X, region 12F-13A, BAC clone BACR10J19, complete sequence Length = 182416 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 acacttccaaataagaacaattat 77 |||||||||| ||||||||||||| Sbjct: 175202 acacttccaattaagaacaattat 175225
>gb|AC018488.7|AC018488 Drosophila melanogaster, chromosome X, region 13A-13B, BAC clone BACR09F03, complete sequence Length = 165118 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 acacttccaaataagaacaattat 77 |||||||||| ||||||||||||| Sbjct: 26328 acacttccaattaagaacaattat 26351
>gb|AC154702.2| Mus musculus BAC clone RP24-348D9 from chromosome 13, complete sequence Length = 157775 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 127 agttgaagtagtttcttcaa 146 |||||||||||||||||||| Sbjct: 96724 agttgaagtagtttcttcaa 96705
>dbj|AP005091.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1104_G11 Length = 140093 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 102566 ccgtagcaacgcacgggcat 102585
>dbj|AP003457.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0660D08 Length = 146915 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 106026 ccgtagcaacgcacgggcat 106045
>gb|AC116469.13| Mus musculus chromosome 5, clone RP23-171F16, complete sequence Length = 207364 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Minus Query: 134 gtagtttcttcaaataatgcatgg 157 |||||||||| ||||||||||||| Sbjct: 15795 gtagtttcttaaaataatgcatgg 15772
>gb|AE003498.5| Drosophila melanogaster chromosome X, section 50 of 74 of the complete sequence Length = 341520 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 54 acacttccaaataagaacaattat 77 |||||||||| ||||||||||||| Sbjct: 27083 acacttccaattaagaacaattat 27106
>gb|AC079681.38| Mus musculus strain C57BL/6J chromosome 10 clone rp23-310n21, complete sequence Length = 216807 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 313 aaaatcactgggaagaaatg 332 |||||||||||||||||||| Sbjct: 199396 aaaatcactgggaagaaatg 199415
>emb|BX000510.1|CNS08CE0 Oryza sativa chromosome 12, . BAC OJ1769_D07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 115859 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 101 ccgtagcaacgcacgggcat 120 |||||||||||||||||||| Sbjct: 73619 ccgtagcaacgcacgggcat 73600
>emb|AL831757.5| Mouse DNA sequence from clone RP23-279A21 on chromosome X, complete sequence Length = 85948 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 307 ccattgaaaatcactgggaa 326 |||||||||||||||||||| Sbjct: 70860 ccattgaaaatcactgggaa 70879 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,935,637 Number of Sequences: 3902068 Number of extensions: 4935637 Number of successful extensions: 91809 Number of sequences better than 10.0: 90 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90008 Number of HSP's gapped (non-prelim): 1801 length of query: 507 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 485 effective length of database: 17,147,199,772 effective search space: 8316391889420 effective search space used: 8316391889420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)