ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62b17
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome... 119 5e-24
2gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome... 119 5e-24
3dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 119 5e-24
4dbj|AK064349.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
5dbj|AK063757.1| Oryza sativa (japonica cultivar-group) cDNA clon... 119 5e-24
6ref|NM_196116.1| Oryza sativa (japonica cultivar-group) putative... 94 3e-16
7gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar N... 94 3e-16
8dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 94 3e-16
9dbj|AK122082.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
10dbj|AK060558.1| Oryza sativa (japonica cultivar-group) cDNA clon... 94 3e-16
11gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 94 3e-16
12gb|AY112424.1| Zea mays CL11845_1 mRNA sequence 54 2e-04
13ref|NM_196110.1| Oryza sativa (japonica cultivar-group) putative... 52 0.001
14gb|AC113335.1| Genomic sequence for Oryza sativa (japonica culti... 52 0.001
15dbj|AK065000.1| Oryza sativa (japonica cultivar-group) cDNA clon... 52 0.001
16ref|XM_419798.1| PREDICTED: Gallus gallus similar to armadillo r... 42 0.93
17gb|DQ160091.1| Taraxacum officinale TO67a-1 (To67a-1) mRNA, part... 42 0.93
18emb|Z93015.9|HS169I5 Human DNA sequence from clone RP1-169I5 on ... 42 0.93
19emb|CR387080.1| Gallus gallus finished cDNA, clone ChEST495g13 42 0.93
20gb|AC137969.9| Mus musculus chromosome 7, clone RP23-267N11, com... 40 3.7
21gb|AY425004.1| Homo sapiens estrogen receptor 1 (ESR1) gene, com... 40 3.7
22emb|AL590993.14| Human DNA sequence from clone RP11-450E24 on ch... 40 3.7
23gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete s... 40 3.7
24gb|AC008473.6| Homo sapiens chromosome 5 clone CTC-375J15, compl... 40 3.7
25ref|NM_001029312.1| Caenorhabditis elegans C52B9.2b (C52B9.2) mR... 40 3.7
26gb|AF326912.1|AF326912 Homo sapiens estrogen receptor 1 (ESR1) g... 40 3.7
27gb|U64598.2| Caenorhabditis elegans cosmid C52B9, complete sequence 40 3.7
28emb|BX511105.8| Zebrafish DNA sequence from clone DKEY-73J8 in l... 40 3.7
29gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, comple... 40 3.7
30gb|AC147559.5| Mus musculus BAC clone RP23-391P1 from 3, complet... 40 3.7 
>gb|AC119290.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
            OSJNBa0037H06, complete sequence
          Length = 144457

 Score =  119 bits (60), Expect = 5e-24
 Identities = 101/115 (87%)
 Strand = Plus / Plus

                                                                        
Query: 58   ttttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacat 117
            |||||||||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||
Sbjct: 1869 ttttcaaggagatgtagccattgttgatcatccactctagattccagtggttgttaacat 1928

                                                                   
Query: 118  tcttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
            |||||||||| ||||| | ||||||||| || ||||  ||||| |||||||||||
Sbjct: 1929 tcttgagagtccaataggaccatccaaaggtggcctgcccataaacatccatctg 1983



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                        
Query: 195  tcttccttcgttgcattgggcacctgccactcagccacccattc 238
            |||||||| ||||||||||| ||   ||||||||||||||||||
Sbjct: 2006 tcttcctttgttgcattgggtactctccactcagccacccattc 2049
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>gb|AC137624.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0680F01,
             complete sequence
          Length = 156691

 Score =  119 bits (60), Expect = 5e-24
 Identities = 101/115 (87%)
 Strand = Plus / Plus

                                                                         
Query: 58    ttttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacat 117
             |||||||||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||
Sbjct: 77850 ttttcaaggagatgtagccattgttgatcatccactctagattccagtggttgttaacat 77909

                                                                    
Query: 118   tcttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
             |||||||||| ||||| | ||||||||| || ||||  ||||| |||||||||||
Sbjct: 77910 tcttgagagtccaataggaccatccaaaggtggcctgcccataaacatccatctg 77964



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                         
Query: 195   tcttccttcgttgcattgggcacctgccactcagccacccattc 238
             |||||||| ||||||||||| ||   ||||||||||||||||||
Sbjct: 77987 tcttcctttgttgcattgggtactctccactcagccacccattc 78030
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score =  119 bits (60), Expect = 5e-24
 Identities = 101/115 (87%)
 Strand = Plus / Plus

                                                                           
Query: 58      ttttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacat 117
               |||||||||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||
Sbjct: 8669427 ttttcaaggagatgtagccattgttgatcatccactctagattccagtggttgttaacat 8669486

                                                                      
Query: 118     tcttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
               |||||||||| ||||| | ||||||||| || ||||  ||||| |||||||||||
Sbjct: 8669487 tcttgagagtccaataggaccatccaaaggtggcctgcccataaacatccatctg 8669541



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 39/44 (88%)
 Strand = Plus / Plus

                                                           
Query: 195     tcttccttcgttgcattgggcacctgccactcagccacccattc 238
               |||||||| ||||||||||| ||   ||||||||||||||||||
Sbjct: 8669564 tcttcctttgttgcattgggtactctccactcagccacccattc 8669607
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>dbj|AK064349.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-108-A03, full
            insert sequence
          Length = 1837

 Score =  119 bits (60), Expect = 5e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                        
Query: 58   ttttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacat 117
            |||||||||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||
Sbjct: 1614 ttttcaaggagatgtagccattgttgatcatccactctagattccagtggttgttaacat 1555

                                                                   
Query: 118  tcttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
            |||||||||| ||||| | ||||||||| || ||||  ||||| |||||||||||
Sbjct: 1554 tcttgagagtccaataggaccatccaaaggtggcctgcccataaacatccatctg 1500



 Score = 67.9 bits (34), Expect = 2e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                        
Query: 195  tcttccttcgttgcattgggcacctgccactcagccacccattcgcctacaaaggtgaga 254
            |||||||| ||||||||||| ||   |||||||||||||||||| || ||||||||||||
Sbjct: 1477 tcttcctttgttgcattgggtactctccactcagccacccattctcccacaaaggtgaga 1418

              
Query: 255  gg 256
            ||
Sbjct: 1417 gg 1416
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>dbj|AK063757.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-121-A08, full
           insert sequence
          Length = 495

 Score =  119 bits (60), Expect = 5e-24
 Identities = 101/115 (87%)
 Strand = Plus / Minus

                                                                       
Query: 58  ttttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacat 117
           |||||||||||||||| ||||| |||||||||||||| | | ||||||||||||| ||||
Sbjct: 131 ttttcaaggagatgtagccattgttgatcatccactctagattccagtggttgttaacat 72

                                                                  
Query: 118 tcttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
           |||||||||| ||||| | ||||||||| || ||||  ||||| |||||||||||
Sbjct: 71  tcttgagagtccaataggaccatccaaaggtggcctgcccataaacatccatctg 17
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>ref|NM_196116.1| Oryza sativa (japonica cultivar-group) putative Glucan
            1,3-beta-glucosidase precursor (OJ1208D02.11), mRNA
          Length = 4350

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 65   ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
            ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 2892 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 2833

                                                  
Query: 125  agtncaataagcccatccaaacgttgcctttccataca 162
             || ||||| | ||||||||| || || || |||||||
Sbjct: 2832 tgtccaataggaccatccaaaagtagctttcccataca 2795



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                   
Query: 221  ccactcagccacccattcgcctacaaaggtgagaggaccgttctgctttgtgaca 275
            |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||
Sbjct: 1305 ccactcagccacccattcccctacatatgtgagaggcccgttctgctttgtgaca 1251



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 221  ccactcagccacccattcgcctacaaaggtgagaggaccgttctgctttgtgac 274
            |||||| ||||||||||| || ||||| || |||||| ||||||||||||||||
Sbjct: 2736 ccactcggccacccattctccgacaaatgttagaggaacgttctgctttgtgac 2683



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 66   gagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgaga 125
            |||||||| ||||||||||||||||||||||  ||||| ||||| |  |||| |||||  
Sbjct: 1460 gagatgtaaccattcttgatcatccactccaagctccaatggttctggacatgcttgaag 1401

                                
Query: 126  gtncaataagcccatccaaa 145
             | ||||| |||||||||||
Sbjct: 1400 ctccaataggcccatccaaa 1381



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 57   attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
            |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 4346 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 4287

                                      
Query: 117  ttcttgagagtncaataagcccatcc 142
            |||||||   | || |||||||||||
Sbjct: 4286 ttcttgaagttccagtaagcccatcc 4261
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>gb|AC107314.1| Oryza sativa (japonica cultivar-group) cultivar Nipponbare clone
             OJ1208D02 from chromosome 10, complete sequence
          Length = 120132

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                         
Query: 65    ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
             ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 55521 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 55580

                                                   
Query: 125   agtncaataagcccatccaaacgttgcctttccataca 162
              || ||||| | ||||||||| || || || |||||||
Sbjct: 55581 tgtccaataggaccatccaaaagtagctttcccataca 55618



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                         
Query: 66    gagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgaga 125
             |||||||| ||||||||||||||||||||||  ||||| ||||| |  |||| |||||  
Sbjct: 59404 gagatgtaaccattcttgatcatccactccaagctccaatggttctggacatgcttgaag 59463

                                 
Query: 126   gtncaataagcccatccaaa 145
              | ||||| |||||||||||
Sbjct: 59464 ctccaataggcccatccaaa 59483



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                         
Query: 74    cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
             |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 19485 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 19544

                      
Query: 134   agcccatcc 142
              ||||||||
Sbjct: 19545 ggcccatcc 19553



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                 
Query: 240   cctacaaaggtgagaggaccgttctgctttgtgaca 275
             |||||| | |||||||| ||||||||||||||||||
Sbjct: 60030 cctacatatgtgagaggcccgttctgctttgtgaca 60065



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                         
Query: 57    attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
             |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 51698 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 51757

                    
Query: 117   ttcttga 123
             |||||||
Sbjct: 51758 ttcttga 51764



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                             
Query: 243   acaaaggtgagaggaccgttctgctttgtgac 274
             ||||| || |||||| ||||||||||||||||
Sbjct: 55947 acaaatgttagaggaacgttctgctttgtgac 55978
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                            
Query: 65       ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
                ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 11187401 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 11187460

                                                      
Query: 125      agtncaataagcccatccaaacgttgcctttccataca 162
                 || ||||| | ||||||||| || || || |||||||
Sbjct: 11187461 tgtccaataggaccatccaaaagtagctttcccataca 11187498



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       gagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgaga 125
                |||||||| ||||||||||||||||||||||  ||||| ||||| |  |||| |||||  
Sbjct: 11191284 gagatgtaaccattcttgatcatccactccaagctccaatggttctggacatgcttgaag 11191343

                                    
Query: 126      gtncaataagcccatccaaa 145
                 | ||||| |||||||||||
Sbjct: 11191344 ctccaataggcccatccaaa 11191363



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                            
Query: 74       cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
                |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 11151365 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 11151424

                         
Query: 134      agcccatcc 142
                 ||||||||
Sbjct: 11151425 ggcccatcc 11151433



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 240      cctacaaaggtgagaggaccgttctgctttgtgaca 275
                |||||| | |||||||| ||||||||||||||||||
Sbjct: 11191910 cctacatatgtgagaggcccgttctgctttgtgaca 11191945



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 57       attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
                |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 11183578 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 11183637

                       
Query: 117      ttcttga 123
                |||||||
Sbjct: 11183638 ttcttga 11183644



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 243      acaaaggtgagaggaccgttctgctttgtgac 274
                ||||| || |||||| ||||||||||||||||
Sbjct: 11187827 acaaatgttagaggaacgttctgctttgtgac 11187858
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>dbj|AK122082.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033121I23, full
            insert sequence
          Length = 4705

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                        
Query: 65   ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
            ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 2969 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 2910

                                                  
Query: 125  agtncaataagcccatccaaacgttgcctttccataca 162
             || ||||| | ||||||||| || || || |||||||
Sbjct: 2909 tgtccaataggaccatccaaaagtagctttcccataca 2872



 Score = 77.8 bits (39), Expect = 2e-11
 Identities = 51/55 (92%)
 Strand = Plus / Minus

                                                                   
Query: 221  ccactcagccacccattcgcctacaaaggtgagaggaccgttctgctttgtgaca 275
            |||||||||||||||||| |||||| | |||||||| ||||||||||||||||||
Sbjct: 1382 ccactcagccacccattcccctacatatgtgagaggcccgttctgctttgtgaca 1328



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                  
Query: 221  ccactcagccacccattcgcctacaaaggtgagaggaccgttctgctttgtgac 274
            |||||| ||||||||||| || ||||| || |||||| ||||||||||||||||
Sbjct: 2813 ccactcggccacccattctccgacaaatgttagaggaacgttctgctttgtgac 2760



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 67/80 (83%)
 Strand = Plus / Minus

                                                                        
Query: 66   gagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgaga 125
            |||||||| ||||||||||||||||||||||  ||||| ||||| |  |||| |||||  
Sbjct: 1537 gagatgtaaccattcttgatcatccactccaagctccaatggttctggacatgcttgaag 1478

                                
Query: 126  gtncaataagcccatccaaa 145
             | ||||| |||||||||||
Sbjct: 1477 ctccaataggcccatccaaa 1458



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 57   attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
            |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 4423 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 4364

                                      
Query: 117  ttcttgagagtncaataagcccatcc 142
            |||||||   | || |||||||||||
Sbjct: 4363 ttcttgaagttccagtaagcccatcc 4338
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>dbj|AK060558.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-022-E05, full
           insert sequence
          Length = 2283

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Minus

                                                                       
Query: 65  ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
           ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 547 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 488

                                                 
Query: 125 agtncaataagcccatccaaacgttgcctttccataca 162
            || ||||| | ||||||||| || || || |||||||
Sbjct: 487 tgtccaataggaccatccaaaagtagctttcccataca 450



 Score = 60.0 bits (30), Expect = 4e-06
 Identities = 48/54 (88%)
 Strand = Plus / Minus

                                                                 
Query: 221 ccactcagccacccattcgcctacaaaggtgagaggaccgttctgctttgtgac 274
           |||||| ||||||||||| || ||||| || |||||| ||||||||||||||||
Sbjct: 391 ccactcggccacccattctccgacaaatgttagaggaacgttctgctttgtgac 338



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 70/86 (81%)
 Strand = Plus / Minus

                                                                        
Query: 57   attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
            |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 2001 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 1942

                                      
Query: 117  ttcttgagagtncaataagcccatcc 142
            |||||||   | || |||||||||||
Sbjct: 1941 ttcttgaagttccagtaagcccatcc 1916
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 93.7 bits (47), Expect = 3e-16
 Identities = 85/98 (86%)
 Strand = Plus / Plus

                                                                            
Query: 65       ggagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgag 124
                ||||||||||||||||||||||||||||||||| ||||||||||| || || ||||||| 
Sbjct: 11193841 ggagatgtacccattcttgatcatccactccatgctccagtggttcttgacgttcttgaa 11193900

                                                      
Query: 125      agtncaataagcccatccaaacgttgcctttccataca 162
                 || ||||| | ||||||||| || || || |||||||
Sbjct: 11193901 tgtccaataggaccatccaaaagtagctttcccataca 11193938



 Score = 58.0 bits (29), Expect = 2e-05
 Identities = 67/80 (83%)
 Strand = Plus / Plus

                                                                            
Query: 66       gagatgtacccattcttgatcatccactccatactccagtggttgtttacattcttgaga 125
                |||||||| ||||||||||||||||||||||  ||||| ||||| |  |||| |||||  
Sbjct: 11197724 gagatgtaaccattcttgatcatccactccaagctccaatggttctggacatgcttgaag 11197783

                                    
Query: 126      gtncaataagcccatccaaa 145
                 | ||||| |||||||||||
Sbjct: 11197784 ctccaataggcccatccaaa 11197803



 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Plus

                                                                            
Query: 74       cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
                |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 11157805 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 11157864

                         
Query: 134      agcccatcc 142
                 ||||||||
Sbjct: 11157865 ggcccatcc 11157873



 Score = 48.1 bits (24), Expect = 0.015
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                                    
Query: 240      cctacaaaggtgagaggaccgttctgctttgtgaca 275
                |||||| | |||||||| ||||||||||||||||||
Sbjct: 11198350 cctacatatgtgagaggcccgttctgctttgtgaca 11198385



 Score = 46.1 bits (23), Expect = 0.060
 Identities = 56/67 (83%)
 Strand = Plus / Plus

                                                                            
Query: 57       attttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttaca 116
                |||||||  ||||| ||||| |||||||||||||| ||||  ||||| ||||| || || 
Sbjct: 11190018 attttcagtgagatatacccgttcttgatcatccattccaagctccaatggttattgacg 11190077

                       
Query: 117      ttcttga 123
                |||||||
Sbjct: 11190078 ttcttga 11190084



 Score = 40.1 bits (20), Expect = 3.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                                
Query: 243      acaaaggtgagaggaccgttctgctttgtgac 274
                ||||| || |||||| ||||||||||||||||
Sbjct: 11194267 acaaatgttagaggaacgttctgctttgtgac 11194298
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>gb|AY112424.1| Zea mays CL11845_1 mRNA sequence
          Length = 613

 Score = 54.0 bits (27), Expect = 2e-04
 Identities = 92/114 (80%)
 Strand = Plus / Plus

                                                                       
Query: 59  tttcaaggagatgtacccattcttgatcatccactccatactccagtggttgtttacatt 118
           |||||| |||||||| |||||  | ||||||||||| | |  ||| ||||||||  ||||
Sbjct: 274 tttcaacgagatgtatccatttctaatcatccactcgagatcccaatggttgttggcatt 333

                                                                 
Query: 119 cttgagagtncaataagcccatccaaacgttgcctttccatacacatccatctg 172
           ||||   || ||||| ||||| |||||||| |||| ||||||||| | ||||||
Sbjct: 334 cttggccgtccaataggcccacccaaacgtggcctgtccatacacgttcatctg 387
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>ref|NM_196110.1| Oryza sativa (japonica cultivar-group) putative Glucan
            1,3-beta-glucosidase precursor (OJ1003C07.1), mRNA
          Length = 1533

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 74   cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
            |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 1512 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 1453

                     
Query: 134  agcccatcc 142
             ||||||||
Sbjct: 1452 ggcccatcc 1444
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>gb|AC113335.1| Genomic sequence for Oryza sativa (japonica cultivar-group) cultivar
            Nipponbare clone OJ1003C07, from chromosome 10, complete
            sequence
          Length = 115188

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 74   cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
            |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 7692 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 7633

                     
Query: 134  agcccatcc 142
             ||||||||
Sbjct: 7632 ggcccatcc 7624
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>dbj|AK065000.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E03, full
            insert sequence
          Length = 1817

 Score = 52.0 bits (26), Expect = 0.001
 Identities = 58/69 (84%)
 Strand = Plus / Minus

                                                                        
Query: 74   cccattcttgatcatccactccatactccagtggttgtttacattcttgagagtncaata 133
            |||||||| |||  |||||| ||| |||||||||||||| || ||||||  ||| |||||
Sbjct: 1549 cccattctggatattccactgcatgctccagtggttgttgacgttcttgtaagtccaata 1490

                     
Query: 134  agcccatcc 142
             ||||||||
Sbjct: 1489 ggcccatcc 1481
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>ref|XM_419798.1| PREDICTED: Gallus gallus similar to armadillo repeat containing 2
           (LOC421768), mRNA
          Length = 1064

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 253 gaggaccgttctgctttgtga 273
           |||||||||||||||||||||
Sbjct: 667 gaggaccgttctgctttgtga 687
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>gb|DQ160091.1| Taraxacum officinale TO67a-1 (To67a-1) mRNA, partial cds
          Length = 260

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                        
Query: 219 tgccactcagccacccattcgcctacaaa 247
           ||||| |||||||||||||| ||||||||
Sbjct: 108 tgccattcagccacccattcccctacaaa 80
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>emb|Z93015.9|HS169I5 Human DNA sequence from clone RP1-169I5 on chromosome Xp11 Contains the
              3' end of the DDX3 gene for DEAD/H (Asp-Glu-Ala-Asp/His)
              box polypeptide 3, the NYX gene for  nyctalopin, a gem
              (nuclear organelle) associated protein 7 (GEMIN7)
              pseudogene and two CpG islands, complete sequence
          Length = 133568

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 74     cccattcttgatcatccactc 94
              |||||||||||||||||||||
Sbjct: 100712 cccattcttgatcatccactc 100732
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>emb|CR387080.1| Gallus gallus finished cDNA, clone ChEST495g13
          Length = 1064

 Score = 42.1 bits (21), Expect = 0.93
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 253 gaggaccgttctgctttgtga 273
           |||||||||||||||||||||
Sbjct: 667 gaggaccgttctgctttgtga 687
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>gb|AC137969.9| Mus musculus chromosome 7, clone RP23-267N11, complete sequence
          Length = 176711

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 229   ccacccattcgcctacaaag 248
             ||||||||||||||||||||
Sbjct: 90570 ccacccattcgcctacaaag 90589
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>gb|AY425004.1| Homo sapiens estrogen receptor 1 (ESR1) gene, complete cds
          Length = 299637

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    ccattcttgatcatccactccata 98
             |||||||||||||||| |||||||
Sbjct: 35895 ccattcttgatcatcctctccata 35918
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>emb|AL590993.14| Human DNA sequence from clone RP11-450E24 on chromosome 6 Contains the
             part of the ESR1 gene for estrogen receptor 1 and a CpG
             island, complete sequence
          Length = 139687

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 75    ccattcttgatcatccactccata 98
             |||||||||||||||| |||||||
Sbjct: 17821 ccattcttgatcatcctctccata 17844
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>gb|AC147959.18| Medicago truncatula clone mth2-11c16, complete sequence
          Length = 132878

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 129   caataagcccatccaaacgttgcc 152
             ||||||||||||||||| ||||||
Sbjct: 24756 caataagcccatccaaatgttgcc 24779
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>gb|AC008473.6| Homo sapiens chromosome 5 clone CTC-375J15, complete sequence
          Length = 98360

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 75    ccattcttgatcatccactccata 98
             |||||||||||||||| |||||||
Sbjct: 72914 ccattcttgatcatcctctccata 72891
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>ref|NM_001029312.1| Caenorhabditis elegans C52B9.2b (C52B9.2) mRNA, complete cds
          Length = 1191

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                   
Query: 177  tttgcaaacattntgagatcttc 199
            |||||||||||| ||||||||||
Sbjct: 1151 tttgcaaacattgtgagatcttc 1129
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>gb|AF326912.1|AF326912 Homo sapiens estrogen receptor 1 (ESR1) gene, exon 2 and partial
           cds
          Length = 1372

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 75  ccattcttgatcatccactccata 98
           |||||||||||||||| |||||||
Sbjct: 206 ccattcttgatcatcctctccata 229
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>gb|U64598.2| Caenorhabditis elegans cosmid C52B9, complete sequence
          Length = 48227

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 177   tttgcaaacattntgagatcttc 199
             |||||||||||| ||||||||||
Sbjct: 28381 tttgcaaacattgtgagatcttc 28359
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>emb|BX511105.8| Zebrafish DNA sequence from clone DKEY-73J8 in linkage group 1,
             complete sequence
          Length = 154448

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 169   tctgtgtatttgcaaacatt 188
             ||||||||||||||||||||
Sbjct: 82554 tctgtgtatttgcaaacatt 82535
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>gb|AC132438.3| Mus musculus BAC clone RP23-234G15 from 3, complete sequence
          Length = 180660

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 83   gatcatccactccatactccagtg 106
            |||||||||||| |||||||||||
Sbjct: 5031 gatcatccactcaatactccagtg 5008
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>gb|AC147559.5| Mus musculus BAC clone RP23-391P1 from 3, complete sequence
          Length = 188305

 Score = 40.1 bits (20), Expect = 3.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 83     gatcatccactccatactccagtg 106
              |||||||||||| |||||||||||
Sbjct: 177623 gatcatccactcaatactccagtg 177600


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,103,762
Number of Sequences: 3902068
Number of extensions: 2103762
Number of successful extensions: 33565
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 33466
Number of HSP's gapped (non-prelim): 99
length of query: 282
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 260
effective length of database: 17,147,199,772
effective search space: 4458271940720
effective search space used: 4458271940720
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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