Clone Name | rbah61m14 |
---|---|
Clone Library Name | barley_pub |
>gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit mRNA, complete cds Length = 3487 Score = 178 bits (90), Expect = 4e-42 Identities = 103/108 (95%) Strand = Plus / Minus Query: 26 gggggtacagaggntacaggagaaggtggcatctgaggagaatatatacagnccatgagg 85 ||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||| Sbjct: 3321 gggggtacagaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagg 3262 Query: 86 gatttagaagcaagcatgcttccctcctacaggaagcatcataacttc 133 ||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 3261 gatttagaagcaagcatgcttccctcctacaggaagcatgataacttc 3214
>emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putative glycine decarboxylase P subunit (gly1 gene) Length = 297 Score = 161 bits (81), Expect = 1e-36 Identities = 94/99 (94%) Strand = Plus / Minus Query: 35 gaggntacaggagaaggtggcatctgaggagaatatatacagnccatgagggatttagaa 94 |||| |||||||||||||||||| |||||||||||||||||| |||||||||||||||| Sbjct: 296 gaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagggatttagaa 237 Query: 95 gcaagcatgcttccctcctacaggaagcatcataacttc 133 |||||||||||||||||||||||||||||| |||||||| Sbjct: 236 gcaagcatgcttccctcctacaggaagcatgataacttc 198
>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds Length = 3408 Score = 139 bits (70), Expect = 4e-30 Identities = 93/101 (92%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggagaatatatacagnccatgagggatttagaagcaag 99 ||||||||| ||||||||||||||||||||||||||| |||||| |||| ||||||||| Sbjct: 3304 tacaggagagggtggcatctgaggagaatatatacagtacatgagagattgagaagcaag 3245 Query: 100 catgcttccctcctacaggaagcatcataacttcttgacac 140 ||||||||||||||||||||||||| ||||||||| |||| Sbjct: 3244 catgcttccctcctacaggaagcattgtaacttctttacac 3204
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 7e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 98 agcatgcttccctcctacaggaagcatcataacttcttg 136 ||||||||||||||||||||||||||| || |||||||| Sbjct: 29559699 agcatgcttccctcctacaggaagcattatgacttcttg 29559661 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 29559787 tacaggagaaggtggcagctgaggaga 29559761
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 61.9 bits (31), Expect = 7e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 98 agcatgcttccctcctacaggaagcatcataacttcttg 136 ||||||||||||||||||||||||||| || |||||||| Sbjct: 29519 agcatgcttccctcctacaggaagcattatgacttcttg 29481 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 29607 tacaggagaaggtggcagctgaggaga 29581
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 61.9 bits (31), Expect = 7e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 98 agcatgcttccctcctacaggaagcatcataacttcttg 136 ||||||||||||||||||||||||||| || |||||||| Sbjct: 125973 agcatgcttccctcctacaggaagcattatgacttcttg 125935 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 126061 tacaggagaaggtggcagctgaggaga 126035
>dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B09, full insert sequence Length = 1194 Score = 61.9 bits (31), Expect = 7e-07 Identities = 37/39 (94%) Strand = Plus / Minus Query: 98 agcatgcttccctcctacaggaagcatcataacttcttg 136 ||||||||||||||||||||||||||| || |||||||| Sbjct: 1051 agcatgcttccctcctacaggaagcattatgacttcttg 1013 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 1139 tacaggagaaggtggcagctgaggaga 1113
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Plus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 24016130 atgcttccctcctacaggaagcat 24016153 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Plus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 24016044 tacaggagaaggtggcagctgaggaga 24016070
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Plus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 145741 atgcttccctcctacaggaagcat 145764 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Plus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 145655 tacaggagaaggtggcagctgaggaga 145681
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Plus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 25823 atgcttccctcctacaggaagcat 25846 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Plus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 25737 tacaggagaaggtggcagctgaggaga 25763
>dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E12, full insert sequence Length = 823 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 670 atgcttccctcctacaggaagcat 647 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 756 tacaggagaaggtggcagctgaggaga 730
>dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F05, full insert sequence Length = 1836 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 1600 atgcttccctcctacaggaagcat 1577 Score = 46.1 bits (23), Expect = 0.040 Identities = 26/27 (96%) Strand = Plus / Minus Query: 40 tacaggagaaggtggcatctgaggaga 66 ||||||||||||||||| ||||||||| Sbjct: 1686 tacaggagaaggtggcagctgaggaga 1660
>gb|AY103920.1| Zea mays PCO082698 mRNA sequence Length = 2092 Score = 48.1 bits (24), Expect = 0.010 Identities = 24/24 (100%) Strand = Plus / Minus Query: 101 atgcttccctcctacaggaagcat 124 |||||||||||||||||||||||| Sbjct: 1845 atgcttccctcctacaggaagcat 1822
>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence Length = 160517 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ttagaagcaagcatgcttccctcct 113 ||||||||| ||||||||||||||| Sbjct: 56383 ttagaagcatgcatgcttccctcct 56407
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 42.1 bits (21), Expect = 0.62 Identities = 24/25 (96%) Strand = Plus / Plus Query: 89 ttagaagcaagcatgcttccctcct 113 ||||||||| ||||||||||||||| Sbjct: 125962 ttagaagcatgcatgcttccctcct 125986
>ref|XM_513692.1| PREDICTED: Pan troglodytes similar to D-3-phosphoglycerate dehydrogenase (3-PGDH) (LOC457168), mRNA Length = 3045 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atggggaggcagcgtggggg 30 |||||||||||||||||||| Sbjct: 2555 atggggaggcagcgtggggg 2536
>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence Length = 167586 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 agaagcaagcatgcttccct 110 |||||||||||||||||||| Sbjct: 146573 agaagcaagcatgcttccct 146554
>emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on chromosome 13 Contains the 3' end of the gene for androgen-induced prostate proliferative shutoff associated protein (AS3) (CG008, FLJ23236, KIAA0979), complete sequence Length = 137246 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 acaggagaaggtggcatctg 60 |||||||||||||||||||| Sbjct: 19254 acaggagaaggtggcatctg 19235
>emb|AL589734.5| Human DNA sequence from clone RP4-683H9 on chromosome 1 Contains the 3' end of the PHGDH gene for phosphoglycerate dehydrogenase and the HMGCS2 gene for 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial), complete sequence Length = 65882 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 11 atggggaggcagcgtggggg 30 |||||||||||||||||||| Sbjct: 17240 atggggaggcagcgtggggg 17221
>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the 5' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), a ribosomal protein L32 (RPL32) pseudogene and five CpG islands, complete sequence Length = 159096 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 43 aggagaaggtggcatctgag 62 |||||||||||||||||||| Sbjct: 77172 aggagaaggtggcatctgag 77191
>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the 3' end of the KIAA0979 gene and part of a novel gene, complete sequence Length = 168487 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 41 acaggagaaggtggcatctg 60 |||||||||||||||||||| Sbjct: 18740 acaggagaaggtggcatctg 18721
>gb|AC010562.5| Drosophila melanogaster 3L BAC RP98-21K18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181528 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 1 tcaaatgggaatggggaggc 20 |||||||||||||||||||| Sbjct: 45578 tcaaatgggaatggggaggc 45559
>gb|AE003560.3| Drosophila melanogaster chromosome 3L, section 25 of 83 of the complete sequence Length = 285494 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 1 tcaaatgggaatggggaggc 20 |||||||||||||||||||| Sbjct: 183151 tcaaatgggaatggggaggc 183170
>emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, complete sequence Length = 38464 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gaagcatcataacttcttga 137 |||||||||||||||||||| Sbjct: 29884 gaagcatcataacttcttga 29903
>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence Length = 179805 Score = 40.1 bits (20), Expect = 2.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 agaagcaagcatgcttccct 110 |||||||||||||||||||| Sbjct: 31467 agaagcaagcatgcttccct 31448
>gb|AC156992.13| Mus musculus chromosome 7, clone RP23-474C17, complete sequence Length = 178169 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 94 agcaagcatgcttccctcc 112 ||||||||||||||||||| Sbjct: 143117 agcaagcatgcttccctcc 143099
>gb|AC125192.3| Mus musculus BAC clone RP23-266B4 from chromosome 8, complete sequence Length = 199459 Score = 38.2 bits (19), Expect = 9.7 Identities = 22/23 (95%) Strand = Plus / Minus Query: 42 caggagaaggtggcatctgagga 64 |||| |||||||||||||||||| Sbjct: 40375 caggggaaggtggcatctgagga 40353
>emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chromosome 1 Contains a processed pseudogene for nuclear receptor binding factor 2 (NRBF2), a processed pseudogene similar to part of olfactory receptor, family 11, subfamily H, member 6 (OR11H6) and the 5' end of the CD53 gene for CD53 antigen, complete sequence Length = 138370 Score = 38.2 bits (19), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 gaggntacaggagaaggtggca 56 |||| ||||||||||||||||| Sbjct: 18625 gaggatacaggagaaggtggca 18604
>emb|AL137066.15| Human DNA sequence from clone RP11-10I9 on chromosome 9 Contains the 5' end of the gene for a novel protein similar to spermatid WD-repeat protein (FLJ90410, FLJ35921), the gene for a novel protein similar to B-box and SPRY-domain containing protein (BSPRY) (FLJ20150), a novel gene (FLJ39748), a novel gene, the ALAD gene for aminolevulinate delta- dehydratase (ALADH), the POLE3 gene for the polymerase (DNA directed) epsilon 3 (p17 subunit) (p17, YBL1, Ybl1, CHRAC17, CHARAC17), the 5' end of the RGS3 gene for the regulator of G-protein signalling 3 (C2PA, RGP3, FLJ20370, PDZ-RGS3) and six CpG islands, complete sequence Length = 137718 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 44 ggagaaggtggcatctgag 62 ||||||||||||||||||| Sbjct: 34568 ggagaaggtggcatctgag 34586
>gb|AC106045.5| Homo sapiens BAC clone RP11-29H20 from 4, complete sequence Length = 183003 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 98 agcatgcttccctcctaca 116 ||||||||||||||||||| Sbjct: 104157 agcatgcttccctcctaca 104139
>gb|AC093533.2| Homo sapiens chromosome 5 clone RP11-46C20, complete sequence Length = 154814 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 50 ggtggcatctgaggagaat 68 ||||||||||||||||||| Sbjct: 86764 ggtggcatctgaggagaat 86746
>gb|AC158591.2| Pan troglodytes BAC clone CH251-526G18 from chromosome unknown, complete sequence Length = 179276 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 48 aaggtggcatctgaggaga 66 ||||||||||||||||||| Sbjct: 165226 aaggtggcatctgaggaga 165244
>gb|AC155842.4| Mus musculus 6 BAC RP24-122N23 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 177409 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 50 ggtggcatctgaggagaat 68 ||||||||||||||||||| Sbjct: 131869 ggtggcatctgaggagaat 131887 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Plus Query: 81 tgagggatttagaagcaag 99 ||||||||||||||||||| Sbjct: 36136 tgagggatttagaagcaag 36154
>emb|BX890617.13| Zebrafish DNA sequence from clone DKEYP-84F11 in linkage group 19, complete sequence Length = 182182 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 123 atcataacttcttgacaca 141 ||||||||||||||||||| Sbjct: 124550 atcataacttcttgacaca 124532
>dbj|AP003476.2| Homo sapiens genomic DNA, chromosome 8q23, clone:KB2033H1 Length = 179650 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 aaggtggcatctgaggaga 66 ||||||||||||||||||| Sbjct: 84186 aaggtggcatctgaggaga 84168
>gb|AC161018.4| Pan troglodytes BAC clone CH251-345F11 from chromosome unknown, complete sequence Length = 153379 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 48 aaggtggcatctgaggaga 66 ||||||||||||||||||| Sbjct: 136473 aaggtggcatctgaggaga 136455
>emb|CT025608.12| Mouse DNA sequence from clone RP23-292F17 on chromosome 9, complete sequence Length = 200204 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 125 cataacttcttgacacagt 143 ||||||||||||||||||| Sbjct: 66260 cataacttcttgacacagt 66242
>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3, complete sequence Length = 119853 Score = 38.2 bits (19), Expect = 9.7 Identities = 21/22 (95%) Strand = Plus / Minus Query: 35 gaggntacaggagaaggtggca 56 |||| ||||||||||||||||| Sbjct: 54567 gaggatacaggagaaggtggca 54546
>emb|AL928593.4| Mouse DNA sequence from clone RP23-100E9 on chromosome 2, complete sequence Length = 195840 Score = 38.2 bits (19), Expect = 9.7 Identities = 19/19 (100%) Strand = Plus / Minus Query: 103 gcttccctcctacaggaag 121 ||||||||||||||||||| Sbjct: 184017 gcttccctcctacaggaag 183999 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 1,211,553 Number of Sequences: 3902068 Number of extensions: 1211553 Number of successful extensions: 90634 Number of sequences better than 10.0: 39 Number of HSP's better than 10.0 without gapping: 39 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 90512 Number of HSP's gapped (non-prelim): 122 length of query: 195 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 173 effective length of database: 17,147,199,772 effective search space: 2966465560556 effective search space used: 2966465560556 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)