Clone Name | rbah61m12 |
---|---|
Clone Library Name | barley_pub |
>gb|AF024589.1| X Tritordeum sp. glycine decarboxylase P subunit mRNA, complete cds Length = 3487 Score = 377 bits (190), Expect = e-101 Identities = 276/304 (90%), Gaps = 18/304 (5%) Strand = Plus / Minus Query: 1 ggacatcaaaacggatctccattatttttcctgtattcagagaagagtagaaatgctagc 60 |||||||||||| |||||||||||||| |||||||||||||||||||| ||||||||||| Sbjct: 3434 ggacatcaaaacagatctccattatttgtcctgtattcagagaagagtggaaatgctagc 3375 Query: 61 caatatagctaatttcactttcaaatgggaatggggaggcag-------cgtggggg-ta 112 |||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct: 3374 caatatagctaatttcactttcaaatgggaatggggaggcagtgggggccgtggggggta 3315 Query: 113 cagaggatacaggagaaggtggcatctgaggagaatatatacagtacatgagggatttag 172 ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 3314 cagaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagggatttag 3255 Query: 173 aagcaagcatgcttccctcctacaggaagcatcataacttcttgacacagtatcacagtt 232 |||||||||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct: 3254 aagcaagcatgcttccctcctacaggaagcatgataacttc---acactgtttcaca--- 3201 Query: 233 cacacaccaggatcgtcatcatcaaaagattacgcggtcgcagctgcagcttcctccgcc 292 |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||| Sbjct: 3200 ----caccaggatcgtcatcatcagaagattacgcggtggcagctgcagcttcctctgcc 3145 Query: 293 acct 296 |||| Sbjct: 3144 acct 3141
>gb|U11693.1|ASU11693 Avena sativa victorin binding protein mRNA, complete cds Length = 3408 Score = 295 bits (149), Expect = 4e-77 Identities = 251/282 (89%), Gaps = 11/282 (3%) Strand = Plus / Minus Query: 14 gatctccattatttttcctgtattcagagaagagtagaaatgctagccaatatagctaat 73 |||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 3408 gatctcaattatttttcctgtattcagagaagagtacaaatgctagccaatatagctaat 3349 Query: 74 ttcactttcaaatgggaatggggaggcagcg-tgggggtacagaggatacaggagaaggt 132 ||||||| ||||||||||||||| | ||| | ||| ||||||| |||||||||| ||| Sbjct: 3348 atcacttttaaatgggaatggggaag--gcgatagggatacagag-atacaggagagggt 3292 Query: 133 ggcatctgaggagaatatatacagtacatgagggatttagaagcaagcatgcttccctcc 192 |||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| Sbjct: 3291 ggcatctgaggagaatatatacagtacatgagagattgagaagcaagcatgcttccctcc 3232 Query: 193 tacaggaagcatcataacttcttgacacagtatcacagttcacacaccaggatcgtcatc 252 |||||||||||| ||||||||| |||| || ||||||||||| |||||||||| Sbjct: 3231 tacaggaagcattgtaacttctttacactgt-------ttcacacaccaagatcgtcatc 3179 Query: 253 atcaaaagattacgcggtcgcagctgcagcttcctccgccac 294 |||| | |||||||||| ||||||||||||||||| ||||| Sbjct: 3178 atcaggatattacgcggtagcagctgcagcttcctctgccac 3137
>emb|AJ635205.1| Triticum durum ssp. durum partial mRNA for putative glycine decarboxylase P subunit (gly1 gene) Length = 297 Score = 226 bits (114), Expect = 3e-56 Identities = 165/182 (90%), Gaps = 10/182 (5%) Strand = Plus / Minus Query: 115 gaggatacaggagaaggtggcatctgaggagaatatatacagtacatgagggatttagaa 174 ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| Sbjct: 296 gaggatacaggagaaggtggcatttgaggagaatatatacagtacatgagggatttagaa 237 Query: 175 gcaagcatgcttccctcctacaggaagcatcataacttcttgacacagtatcacagttca 234 |||||||||||||||||||||||||||||| |||||||| |||| || ||||| Sbjct: 236 gcaagcatgcttccctcctacaggaagcatgataacttc---acactgtttcaca----- 185 Query: 235 cacaccaggatcgtcatcatcaaaagattacgcggtcgcagctgcagcttcctccgccac 294 |||||||||||||||||||| ||||||||||||| ||||||||||||||||| ||||| Sbjct: 184 --caccaggatcgtcatcatcagaagattacgcggtggcagctgcagcttcctctgccac 127 Query: 295 ct 296 || Sbjct: 126 ct 125
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 178 agcatgcttccctcctacaggaagcatcataacttcttg 216 ||||||||||||||||||||||||||| || |||||||| Sbjct: 29559699 agcatgcttccctcctacaggaagcattatgacttcttg 29559661 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Minus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 29559856 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 29559806 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 29559787 tacaggagaaggtggcagctgaggaga 29559761 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 11397743 tcctccgccacctcctgctgca 11397722 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 11099547 tcctccgccacctcctgctgca 11099526 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 10179925 tcctccgccacctcctgctgca 10179946
>dbj|AP003410.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1142C05 Length = 151457 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 178 agcatgcttccctcctacaggaagcatcataacttcttg 216 ||||||||||||||||||||||||||| || |||||||| Sbjct: 29519 agcatgcttccctcctacaggaagcattatgacttcttg 29481 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Minus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 29676 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 29626 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 29607 tacaggagaaggtggcagctgaggaga 29581
>dbj|AP002901.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0456F08 Length = 156850 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 178 agcatgcttccctcctacaggaagcatcataacttcttg 216 ||||||||||||||||||||||||||| || |||||||| Sbjct: 125973 agcatgcttccctcctacaggaagcattatgacttcttg 125935 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Minus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 126130 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 126080 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 126061 tacaggagaaggtggcagctgaggaga 126035
>dbj|AK111968.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-204-B09, full insert sequence Length = 1194 Score = 61.9 bits (31), Expect = 1e-06 Identities = 37/39 (94%) Strand = Plus / Minus Query: 178 agcatgcttccctcctacaggaagcatcataacttcttg 216 ||||||||||||||||||||||||||| || |||||||| Sbjct: 1051 agcatgcttccctcctacaggaagcattatgacttcttg 1013 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 1139 tacaggagaaggtggcagctgaggaga 1113
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 24016130 atgcttccctcctacaggaagcat 24016153 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 24016044 tacaggagaaggtggcagctgaggaga 24016070 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Plus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 24015975 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 24016025 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 23668923 tcctccgccacctcctgctgca 23668902 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 18880376 tcctccgccacctcctgctgca 18880397 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 18880340 tcctccgccacctcctgctgca 18880361
>dbj|AP003616.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0490F09 Length = 149542 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 145741 atgcttccctcctacaggaagcat 145764 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 145655 tacaggagaaggtggcagctgaggaga 145681 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Plus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 145586 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 145636
>dbj|AP003626.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0429G06 Length = 158321 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Plus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 25823 atgcttccctcctacaggaagcat 25846 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Plus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 25737 tacaggagaaggtggcagctgaggaga 25763 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Plus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 25668 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 25718
>dbj|AK111934.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-019-E12, full insert sequence Length = 823 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 670 atgcttccctcctacaggaagcat 647 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 756 tacaggagaaggtggcagctgaggaga 730 Score = 44.1 bits (22), Expect = 0.26 Identities = 40/46 (86%) Strand = Plus / Minus Query: 52 aatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 820 aatgctagtcaataaagctaatttcacctttgaacgggaatgggga 775
>dbj|AK111644.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013129F05, full insert sequence Length = 1836 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 1600 atgcttccctcctacaggaagcat 1577 Score = 46.1 bits (23), Expect = 0.065 Identities = 44/51 (86%) Strand = Plus / Minus Query: 47 gtagaaatgctagccaatatagctaatttcactttcaaatgggaatgggga 97 |||| |||||||| ||||| |||||||||||| || || ||||||||||| Sbjct: 1755 gtagcaatgctagtcaataaagctaatttcacctttgaacgggaatgggga 1705 Score = 46.1 bits (23), Expect = 0.065 Identities = 26/27 (96%) Strand = Plus / Minus Query: 120 tacaggagaaggtggcatctgaggaga 146 ||||||||||||||||| ||||||||| Sbjct: 1686 tacaggagaaggtggcagctgaggaga 1660
>gb|AY103920.1| Zea mays PCO082698 mRNA sequence Length = 2092 Score = 48.1 bits (24), Expect = 0.016 Identities = 24/24 (100%) Strand = Plus / Minus Query: 181 atgcttccctcctacaggaagcat 204 |||||||||||||||||||||||| Sbjct: 1845 atgcttccctcctacaggaagcat 1822
>ref|NM_195405.1| Oryza sativa (japonica cultivar-group) hypothetical protein (OSJNBa0056A15.9), mRNA Length = 2595 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1470 tcctccgccacctcctgctgca 1491
>ref|XM_478034.1| Oryza sativa (japonica cultivar-group), mRNA Length = 2724 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1503 tcctccgccacctcctgctgca 1524
>ref|XM_472039.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4047 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2784 tcctccgccacctcctgctgca 2805
>ref|NM_187722.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 2031 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 783 tcctccgccacctcctgctgca 804
>gb|AC145323.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBb0018N12, complete sequence Length = 137127 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2415 tcctccgccacctcctgctgca 2394 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2379 tcctccgccacctcctgctgca 2358
>gb|AC145321.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0094P07, complete sequence Length = 162311 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 142161 tcctccgccacctcctgctgca 142140 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 142125 tcctccgccacctcctgctgca 142104
>emb|AL731585.5| Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009K15, complete sequence Length = 185021 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 39926 tcctccgccacctcctgctgca 39905
>gb|AC146893.1| Oryza sativa (japonica cultivar-group) chromosome 10 clone B1107B01, complete sequence Length = 160104 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16104 tcctccgccacctcctgctgca 16125
>emb|Z84572.1|HS49J10 Human DNA sequence from clone RP1-49J10 on chromosome 13 Contains the 3' end of the gene for androgen-induced prostate proliferative shutoff associated protein (AS3) (CG008, FLJ23236, KIAA0979), complete sequence Length = 137246 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 gaggatacaggagaaggtggcatctg 140 ||||| |||||||||||||||||||| Sbjct: 19260 gaggacacaggagaaggtggcatctg 19235
>emb|AL354713.7| Human DNA sequence from clone RP11-498A13 on chromosome 1 Contains a processed pseudogene for nuclear receptor binding factor 2 (NRBF2), a processed pseudogene similar to part of olfactory receptor, family 11, subfamily H, member 6 (OR11H6) and the 5' end of the CD53 gene for CD53 antigen, complete sequence Length = 138370 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 gaggatacaggagaaggtggca 136 |||||||||||||||||||||| Sbjct: 18625 gaggatacaggagaaggtggca 18604
>emb|AL138820.11| Human DNA sequence from clone RP11-380B4 on chromosome 13 Contains the 3' end of the KIAA0979 gene and part of a novel gene, complete sequence Length = 168487 Score = 44.1 bits (22), Expect = 0.26 Identities = 25/26 (96%) Strand = Plus / Minus Query: 115 gaggatacaggagaaggtggcatctg 140 ||||| |||||||||||||||||||| Sbjct: 18746 gaggacacaggagaaggtggcatctg 18721
>gb|AC104615.9| Oryza sativa chromosome 10 BAC OSJNBa0056A15 genomic sequence, complete sequence Length = 150995 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 46203 tcctccgccacctcctgctgca 46182
>gb|AC010562.5| Drosophila melanogaster 3L BAC RP98-21K18 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 181528 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 79 tttcaaatgggaatggggaggc 100 |||||||||||||||||||||| Sbjct: 45580 tttcaaatgggaatggggaggc 45559
>tpg|BK000936.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M330, complete sequence Length = 14030 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 8424 tcctccgccacctcctgctgca 8445
>tpg|BK000912.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M305, complete sequence Length = 11131 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2271 tcctccgccacctcctgctgca 2250
>tpg|BK000911.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M314, complete sequence Length = 11291 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2815 tcctccgccacctcctgctgca 2794
>tpg|BK000908.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M312, complete sequence Length = 11198 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2436 tcctccgccacctcctgctgca 2415
>tpg|BK000886.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M274, complete sequence Length = 10151 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2386 tcctccgccacctcctgctgca 2365
>tpg|BK000869.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M266, complete sequence Length = 8882 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 6480 tcctccgccacctcctgctgca 6501
>tpg|BK000363.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M83 transposase gene, complete cds Length = 18041 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 12432 tcctccgccacctcctgctgca 12453
>tpg|BK000336.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M56 transposase gene, complete cds Length = 8074 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 2389 tcctccgccacctcctgctgca 2368
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16985885 tcctccgccacctcctgctgca 16985906 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 11717139 tcctccgccacctcctgctgca 11717118
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 4133663 tcctccgccacctcctgctgca 4133684
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5155334 tcctccgccacctcctgctgca 5155355 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5155298 tcctccgccacctcctgctgca 5155319
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 6652873 tcctccgccacctcctgctgca 6652894
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete sequence Length = 22696651 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5511123 tcctccgccacctcctgctgca 5511102 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5511087 tcctccgccacctcctgctgca 5511066 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 4840864 tcctccgccacctcctgctgca 4840843
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 21728838 tcctccgccacctcctgctgca 21728817 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16701171 tcctccgccacctcctgctgca 16701150 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16701135 tcctccgccacctcctgctgca 16701114 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16595138 tcctccgccacctcctgctgca 16595159 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 11492513 tcctccgccacctcctgctgca 11492534
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16788434 tcctccgccacctcctgctgca 16788413 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1443647 tcctccgccacctcctgctgca 1443668 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1410478 tcctccgccacctcctgctgca 1410499 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1377327 tcctccgccacctcctgctgca 1377348 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 1344174 tcctccgccacctcctgctgca 1344195
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 22723671 tcctccgccacctcctgctgca 22723650 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 22723635 tcctccgccacctcctgctgca 22723614 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 9482425 tcctccgccacctcctgctgca 9482446 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 268 ggtcgcagctgcagcttcctccgccacctcct 299 ||||||||| || | ||||||||||||||||| Sbjct: 6144163 ggtcgcagccgctgtttcctccgccacctcct 6144194
>dbj|AP003578.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0682B08 Length = 138376 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 128429 tcctccgccacctcctgctgca 128408
>dbj|AP003631.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0581F09 Length = 154248 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 127394 tcctccgccacctcctgctgca 127415
>dbj|AP003020.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0498A12 Length = 159749 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 45239 tcctccgccacctcctgctgca 45260
>dbj|AP005383.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1034_C08 Length = 154441 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 46647 tcctccgccacctcctgctgca 46668
>dbj|AP003684.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0485D10 Length = 147464 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 45941 tcctccgccacctcctgctgca 45962 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 45905 tcctccgccacctcctgctgca 45926
>dbj|AP004683.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0006C08 Length = 151987 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 95986 tcctccgccacctcctgctgca 96007
>dbj|AP003567.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBb0022N24 Length = 124062 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 34941 tcctccgccacctcctgctgca 34920
>dbj|AP005547.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:OJ1031_C12 Length = 157574 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 116962 tcctccgccacctcctgctgca 116941 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 116926 tcctccgccacctcctgctgca 116905
>dbj|AP002873.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0552C05 Length = 136586 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 111328 tcctccgccacctcctgctgca 111307
>dbj|AP006446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1097H10 Length = 159732 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 158468 tcctccgccacctcctgctgca 158447
>dbj|AP005903.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC clone:B1012G11 Length = 167168 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 23396 tcctccgccacctcctgctgca 23375
>dbj|AP005446.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0029C06 Length = 156500 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 16999 tcctccgccacctcctgctgca 16978
>dbj|AP005309.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474G09 Length = 169511 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 142162 tcctccgccacctcctgctgca 142183 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 109009 tcctccgccacctcctgctgca 109030
>dbj|AP006451.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1249D05 Length = 132526 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 29236 tcctccgccacctcctgctgca 29257
>dbj|AP005604.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1212_C12 Length = 147782 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 83832 tcctccgccacctcctgctgca 83853 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 50663 tcctccgccacctcctgctgca 50684 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 17512 tcctccgccacctcctgctgca 17533
>dbj|AP003808.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1115_C05 Length = 146585 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 128346 tcctccgccacctcctgctgca 128325
>dbj|AP003806.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1103_E04 Length = 111354 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5001 tcctccgccacctcctgctgca 4980
>dbj|AP005643.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBb0046O12 Length = 128223 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 82467 tcctccgccacctcctgctgca 82446 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 82431 tcctccgccacctcctgctgca 82410
>dbj|AP004665.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0429B05 Length = 155024 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 8421 tcctccgccacctcctgctgca 8400
>dbj|AP004564.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0479C12 Length = 136799 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 96408 tcctccgccacctcctgctgca 96387
>dbj|AP005628.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1014_E02 Length = 159669 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 66962 tcctccgccacctcctgctgca 66983
>dbj|AP005464.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1027A11 Length = 169506 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 77081 tcctccgccacctcctgctgca 77060 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 77045 tcctccgccacctcctgctgca 77024
>dbj|AP005097.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:B1114E07 Length = 135511 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 106502 tcctccgccacctcctgctgca 106523
>gb|AE003560.3| Drosophila melanogaster chromosome 3L, section 25 of 83 of the complete sequence Length = 285494 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 79 tttcaaatgggaatggggaggc 100 |||||||||||||||||||||| Sbjct: 183149 tttcaaatgggaatggggaggc 183170
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 6655259 tcctccgccacctcctgctgca 6655280
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5221751 tcctccgccacctcctgctgca 5221772 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 5221715 tcctccgccacctcctgctgca 5221736
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 4133650 tcctccgccacctcctgctgca 4133671
>emb|AL928748.4|CNS08CBL Oryza sativa chromosome 12, . BAC OSJNBb0092O07 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 123469 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 76059 tcctccgccacctcctgctgca 76080
>emb|AL606990.3|OSJN00122 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0066J23, complete sequence Length = 156934 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 41141 tcctccgccacctcctgctgca 41162
>emb|AL136374.4| Human DNA sequence from clone RP1-244G5 on chromosome 1q24.3-25.3, complete sequence Length = 119853 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Minus Query: 115 gaggatacaggagaaggtggca 136 |||||||||||||||||||||| Sbjct: 54567 gaggatacaggagaaggtggca 54546
>dbj|AP003018.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OSJNBa0004B13 Length = 142268 Score = 44.1 bits (22), Expect = 0.26 Identities = 22/22 (100%) Strand = Plus / Plus Query: 284 tcctccgccacctcctgctgca 305 |||||||||||||||||||||| Sbjct: 104524 tcctccgccacctcctgctgca 104545
>gb|AC136645.2| Rattus norvegicus 7 BAC CH230-156H17 (Children's Hospital Oakland Research Institute) complete sequence Length = 204000 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 211 ttcttgacacagtatcacagttcac 235 |||||||||||||| |||||||||| Sbjct: 161365 ttcttgacacagtaacacagttcac 161341
>gb|AC132292.3| Mus musculus BAC clone RP24-319L4 from chromosome 5, complete sequence Length = 160517 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 ttagaagcaagcatgcttccctcct 193 ||||||||| ||||||||||||||| Sbjct: 56383 ttagaagcatgcatgcttccctcct 56407
>gb|AC097372.3| Homo sapiens BAC clone RP11-6L6 from 4, complete sequence Length = 163823 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Minus Query: 278 gcagcttcctccgccacctcctgct 302 |||||||||||| |||||||||||| Sbjct: 3195 gcagcttcctccaccacctcctgct 3171
>gb|AC155173.3| Mus musculus BAC clone RP23-72O23 from chromosome 5, complete sequence Length = 245443 Score = 42.1 bits (21), Expect = 1.0 Identities = 24/25 (96%) Strand = Plus / Plus Query: 169 ttagaagcaagcatgcttccctcct 193 ||||||||| ||||||||||||||| Sbjct: 125962 ttagaagcatgcatgcttccctcct 125986
>ref|XM_464584.1| Oryza sativa (japonica cultivar-group), mRNA Length = 738 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Minus Query: 268 ggtcgcagctgcagcttcctccgccacctcct 299 ||||||||| || | ||||||||||||||||| Sbjct: 196 ggtcgcagccgctgtttcctccgccacctcct 165
>ref|XM_513692.1| PREDICTED: Pan troglodytes similar to D-3-phosphoglycerate dehydrogenase (3-PGDH) (LOC457168), mRNA Length = 3045 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 atggggaggcagcgtggggg 110 |||||||||||||||||||| Sbjct: 2555 atggggaggcagcgtggggg 2536
>gb|AC134415.8| Mus musculus chromosome 3, clone RP24-224P21, complete sequence Length = 167586 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 agaagcaagcatgcttccct 190 |||||||||||||||||||| Sbjct: 146573 agaagcaagcatgcttccct 146554
>emb|AL589734.5| Human DNA sequence from clone RP4-683H9 on chromosome 1 Contains the 3' end of the PHGDH gene for phosphoglycerate dehydrogenase and the HMGCS2 gene for 3-hydroxy-3-methylglutaryl-Coenzyme A synthase 2 (mitochondrial), complete sequence Length = 65882 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 91 atggggaggcagcgtggggg 110 |||||||||||||||||||| Sbjct: 17240 atggggaggcagcgtggggg 17221
>emb|AL161781.12| Human DNA sequence from clone RP11-297B17 on chromosome 9 Contains the 5' end of the PAX5 gene for paired box gene 5 (B-cell lineage specific activator protein) (BSAP), a ribosomal protein L32 (RPL32) pseudogene and five CpG islands, complete sequence Length = 159096 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 123 aggagaaggtggcatctgag 142 |||||||||||||||||||| Sbjct: 77172 aggagaaggtggcatctgag 77191
>emb|BX284633.6| Mouse DNA sequence from clone RP23-15F8 on chromosome 11, complete sequence Length = 44217 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 14 gatctccattatttttcctgtatt 37 ||||| |||||||||||||||||| Sbjct: 16970 gatctgcattatttttcctgtatt 16993
>gb|AY118396.1| Drosophila melanogaster RE56844 full insert cDNA Length = 3802 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 2058 gcagctgcagcttcctccgc 2039
>ref|NM_135676.2| Drosophila melanogaster Phosphodiesterase 1c CG14940-RA (Pde1c), mRNA Length = 3892 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 2059 gcagctgcagcttcctccgc 2040
>gb|AY084186.1| Drosophila melanogaster RE69157 full insert cDNA Length = 3876 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 3187 gcagctgcagcttcctccgc 3168
>gb|AC093199.1| Drosophila melanogaster, chromosome 2L, region 33A-33A, BAC clone BACR05B13, complete sequence Length = 168641 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 62112 gcagctgcagcttcctccgc 62093
>gb|AC000089.1| Homo sapiens Chromosome 22q11.2 Cosmid Clone 89h In DGCR Region, complete sequence Length = 39754 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ttcctccgccacctcctgct 302 |||||||||||||||||||| Sbjct: 35718 ttcctccgccacctcctgct 35737
>gb|AC000076.2| Homo sapiens Chromosome 22q11.2 Cosmid Clone 2h In DGCR Region, complete sequence Length = 41091 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 283 ttcctccgccacctcctgct 302 |||||||||||||||||||| Sbjct: 5212 ttcctccgccacctcctgct 5231
>gb|U53151.1| Caenorhabditis elegans cosmid T05B11, complete sequence Length = 25934 Score = 40.1 bits (20), Expect = 4.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 20 cattatttttcctgtattcagaga 43 ||||||||||||||| |||||||| Sbjct: 19012 cattatttttcctgttttcagaga 19035
>ref|XM_221487.3| PREDICTED: Rattus norvegicus similar to Ubiquitin ligase protein DZIP3 (DAZ-interacting protein 3 homolog) (LOC303963), mRNA Length = 3876 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 279 cagcttcctccgccacctcc 298 |||||||||||||||||||| Sbjct: 3115 cagcttcctccgccacctcc 3134
>dbj|AP003977.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1006_A02 Length = 175153 Score = 40.1 bits (20), Expect = 4.0 Identities = 29/32 (90%) Strand = Plus / Plus Query: 268 ggtcgcagctgcagcttcctccgccacctcct 299 ||||||||| || | ||||||||||||||||| Sbjct: 109645 ggtcgcagccgctgtttcctccgccacctcct 109676
>gb|AE003633.3| Drosophila melanogaster chromosome 2L, section 42 of 83 of the complete sequence Length = 266175 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 258432 gcagctgcagcttcctccgc 258451
>gb|AC006240.1|AC006240 Drosophila melanogaster, chromosome 2L, region 33A3-33B2, P1 clones DS06189, DS04362, and DS07071, complete sequence Length = 170056 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 272 gcagctgcagcttcctccgc 291 |||||||||||||||||||| Sbjct: 147461 gcagctgcagcttcctccgc 147442
>emb|Z77666.1|CEK08E7 Caenorhabditis elegans Cosmid K08E7, complete sequence Length = 38464 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 198 gaagcatcataacttcttga 217 |||||||||||||||||||| Sbjct: 29884 gaagcatcataacttcttga 29903
>gb|AC103937.16| Mus musculus chromosome 3, clone RP23-229C5, complete sequence Length = 179805 Score = 40.1 bits (20), Expect = 4.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 agaagcaagcatgcttccct 190 |||||||||||||||||||| Sbjct: 31467 agaagcaagcatgcttccct 31448 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,348,357 Number of Sequences: 3902068 Number of extensions: 3348357 Number of successful extensions: 70612 Number of sequences better than 10.0: 96 Number of HSP's better than 10.0 without gapping: 104 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 69912 Number of HSP's gapped (non-prelim): 700 length of query: 305 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 283 effective length of database: 17,147,199,772 effective search space: 4852657535476 effective search space used: 4852657535476 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)