ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61m10
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase 96 8e-20
2BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase 55 2e-07
3OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 ... 35 0.13
4HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subuni... 32 1.1
5FILA_MOUSE (P11088) Filaggrin (Fragment) 32 1.4
6RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast prec... 31 1.8
7HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subuni... 31 1.8
8CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein ... 31 2.4
9HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subuni... 30 4.0
10PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain p... 30 4.0
11RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
12RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
13RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
14RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC ... 30 5.3
15VGLB_PRVIF (P08355) Glycoprotein GII precursor 30 5.3
16RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in r... 29 6.9
17GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment) 29 6.9
18ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kin... 29 6.9
19ZN592_HUMAN (Q92610) Zinc finger protein 592 29 6.9
20ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltr... 29 9.0
21POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains:... 29 9.0
22GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix p... 29 9.0
23NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer... 29 9.0
24RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC ... 29 9.0

>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase|
          Length = 407

 Score = 95.5 bits (236), Expect = 8e-20
 Identities = 45/69 (65%), Positives = 56/69 (81%)
 Frame = -1

Query: 515 TYKVLDILQKVFYRSNAAREAFVKMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTI 336
           TY VLDILQ+VFYR++A REAFV+MC+D  VQ++TFDSYLYK VVP NP+  +K+   TI
Sbjct: 337 TYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTI 396

Query: 335 GSLVRATAL 309
           GSL+R  AL
Sbjct: 397 GSLLRGNAL 405



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>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase|
          Length = 391

 Score = 54.7 bits (130), Expect = 2e-07
 Identities = 24/62 (38%), Positives = 40/62 (64%)
 Frame = -1

Query: 512 YKVLDILQKVFYRSNAAREAFVKMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIG 333
           +KVL ++Q  +Y S+  RE FV +C D  VQRMTF+SY+ K++    P++++K+    + 
Sbjct: 321 FKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLA 380

Query: 332 SL 327
            L
Sbjct: 381 HL 382



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>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6|
          Length = 3519

 Score = 35.0 bits (79), Expect = 0.13
 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 12/87 (13%)
 Frame = +3

Query: 288  ELPHLPAQR------GGPDEAADGVDSELDVL--DGVARHDALV---EVAVEGHPLHVVV 434
            +LP  P QR      G P  +A+GVD E D +  D V R D++    E+ ++   LH V+
Sbjct: 2554 DLPTYPFQRQRFWLDGSPASSANGVDGEADAMIWDAVEREDSVAVAEELGIDAEALHTVL 2613

Query: 435  GAHLHERLPRRVGAVEH-LLQDVQHLV 512
             A    R  R    VEH  LQD ++ V
Sbjct: 2614 PALSSWRRRR----VEHRRLQDWRYRV 2636



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>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 32.0 bits (71), Expect = 1.1
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71



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>FILA_MOUSE (P11088) Filaggrin (Fragment)|
          Length = 336

 Score = 31.6 bits (70), Expect = 1.4
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%)
 Frame = -3

Query: 375 QPHRGHQARCQH---HRQPRQGHRAAPGDGEAH 286
           +  RGHQ + QH   H QP  GHR     G  H
Sbjct: 173 EQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGH 205



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>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor|
          Length = 1783

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 11/109 (10%)
 Frame = +3

Query: 36  SNIGV--------LQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRS 191
           SN+GV        L  +RR V+      T +W+           PLP     +   +  S
Sbjct: 373 SNVGVNGASPQERLMAARRAVV------TMQWNTHLGRRGRSFAPLPTGGMSIATSAASS 426

Query: 192 AADLCYTDRSAAASSNPSRMSG---TFPVCRRSQGELPHLPAQRGGPDE 329
           +     +  S    SN  + S    + PV ++   E PH+P   GGP +
Sbjct: 427 STSSASSSSSMNDGSNAKKTSDAAVSLPVGQQPAAEQPHVPTAPGGPSQ 475



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>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332
           LKSVR+A  L   +     S +P R+S    V    QG +P   A   RGG DEA
Sbjct: 17  LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71



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>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5|
            activator-binding protein C48)
          Length = 1822

 Score = 30.8 bits (68), Expect = 2.4
 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
 Frame = -3

Query: 363  GHQARCQHHRQPR--QGHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRIDRYSRDPRP 190
            G  AR + H Q    +G R   G+   H ++ ++PE S +  L   ++      SRDP+P
Sbjct: 1324 GKSARVEPHPQNELLKGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKP 1383



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>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC|
           2.4.2.-) (IGP synthase glutamine amidotransferase
           subunit) (IGP synthase subunit hisH) (ImGP synthase
           subunit hisH) (IGPS subunit hisH)
          Length = 212

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%)
 Frame = +3

Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332
           LKSVR+A  L   +     S +P R+S    V    QG +P   A  +R G DEA
Sbjct: 17  LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71



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>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)|
           (PDM-1) (dPOU-19) (dOCT1)
          Length = 601

 Score = 30.0 bits (66), Expect = 4.0
 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%)
 Frame = -3

Query: 318 HRAAPGDGEAHL---VIADTPETSLTSCLGCSKLRRIDRYSRDPRPIERI*GRGDENKEV 148
           H A+P D +  L   ++  TP ++  + +   + R I R SR P P++      D+N   
Sbjct: 9   HTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSRSPSPLQSNASDCDDNNSS 68

Query: 147 MASIERSCLGRTCPIFLYGDVQTSEQFV 64
           + +    C     P       Q   Q +
Sbjct: 69  VGTSSDRCRSPLSPALSLSHQQAKRQLM 96



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>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 94  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335



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>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 94  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335



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>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 94  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335



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>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1316

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 19/57 (33%), Positives = 26/57 (45%)
 Frame = +1

Query: 94  VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264
           V  NG G  K R L R   +     S ++P     + A+P+ PP+LR       GRF
Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335



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>VGLB_PRVIF (P08355) Glycoprotein GII precursor|
          Length = 913

 Score = 29.6 bits (65), Expect = 5.3
 Identities = 17/50 (34%), Positives = 25/50 (50%)
 Frame = +3

Query: 225 AASSNPSRMSGTFPVCRRSQGELPHLPAQRGGPDEAADGVDSELDVLDGV 374
           AAS++P+  +G  P    ++  L  + A   GP EA DG   +LD    V
Sbjct: 64  AASASPTPGTGATPNDVSAEASLEEIEAFSPGPSEAPDGEYGDLDARTAV 113



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>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma|
           on chromosome 8)
          Length = 664

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 10/96 (10%)
 Frame = +3

Query: 126 TTSRSTPLPLYSHLLCLKSVRSAADLC-------YTDRSAAASSNPSRMSGTFPVCRRSQ 284
           T++R TP   Y H LCL+      D C       Y +     +SN S  +G  P     +
Sbjct: 556 TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSNNNGFIPPNETPE 615

Query: 285 GELPHLPAQRGGPDEAADGVDSELDV---LDGVARH 383
             +    A+        D  D + DV    +GV +H
Sbjct: 616 EAVREAAAESDRELNEDDSTDCDDDVQRERNGVIQH 651



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>GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment)|
          Length = 1360

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +3

Query: 231 SSNPSRMSGTFPVCRRSQGELPHLPAQRGGPDEAADGVDS 350
           +S  S MS  + V RRS    P+LP QR G  ++ + VDS
Sbjct: 591 NSTTSTMSSAYTVSRRSSVVSPYLPNQRAG--DSGNMVDS 628



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>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)|
           (N-acetyl-L-glutamate 5-phosphotransferase)
          Length = 293

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = -3

Query: 312 AAPGDGEAHLVIADTPETSLTSCLGCSKL 226
           A PGDG AH + ADT    L + L   KL
Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205



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>ZN592_HUMAN (Q92610) Zinc finger protein 592|
          Length = 1267

 Score = 29.3 bits (64), Expect = 6.9
 Identities = 15/48 (31%), Positives = 20/48 (41%)
 Frame = -3

Query: 375  QPHRGHQARCQHHRQPRQGHRAAPGDGEAHLVIADTPETSLTSCLGCS 232
            +P  GH  +  H ++P  G   APG      V +     SL  C  CS
Sbjct: 1083 KPPGGHSPQVNHLKRPVSGVGDAPGTSNGATVSSTKRHKSLFQCAKCS 1130



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>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC|
           2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose
           mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol
           mannosyltransferase) (Beta-1,4-mannosyltransferase)
           (Mannosyltransferase-
          Length = 464

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +1

Query: 88  ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 222
           +TV +      K  PLD +H LF+ + S  +PF   R  + P DP
Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253



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>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix|
           protein p17 (MA); Capsid protein p24 (CA); p2 spacer
           peptide; Nucleocapsid protein* (NC*); Transframe peptide
           (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin)
           (PR); Reverse trans
          Length = 1439

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 177 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 299
           KS +         ++AAA+ N S +S  +P+ + +QG++ H
Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149



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>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17|
           (MA); Capsid protein p24 (CA); Spacer peptide p2;
           Nucleocapsid protein p7 (NC); Spacer peptide p1; p6]
          Length = 504

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 12/41 (29%), Positives = 23/41 (56%)
 Frame = +3

Query: 177 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 299
           KS +         ++AAA+ N S +S  +P+ + +QG++ H
Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149



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>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells|
           cyclophilin-related protein) (NK-TR protein)
          Length = 1453

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 21/65 (32%), Positives = 29/65 (44%)
 Frame = +3

Query: 54  QQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAAS 233
           ++SR +   S H   R W + DQD  S ST     S+        S +D   + RS A S
Sbjct: 483 RRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSY---RSKSHSRSDSRGSSRSRAVS 539

Query: 234 SNPSR 248
            + SR
Sbjct: 540 KSSSR 544



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>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
           beta' subunit) (Transcriptase beta' chain) (RNA
           polymerase beta' subunit)
          Length = 1333

 Score = 28.9 bits (63), Expect = 9.0
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +1

Query: 103 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264
           NG G  K R L R   +     S ++P     ++AIP+ PP+LR       GRF
Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,123,994
Number of Sequences: 219361
Number of extensions: 1484360
Number of successful extensions: 5220
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 5042
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5213
length of database: 80,573,946
effective HSP length: 104
effective length of database: 57,760,402
effective search space used: 3985467738
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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