ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61m10 |
|---|---|
| Clone Library Name | barley_pub |
>CHLP_SYNY3 (Q55087) Geranylgeranyl hydrogenase| Length = 407 Score = 95.5 bits (236), Expect = 8e-20 Identities = 45/69 (65%), Positives = 56/69 (81%) Frame = -1 Query: 515 TYKVLDILQKVFYRSNAAREAFVKMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTI 336 TY VLDILQ+VFYR++A REAFV+MC+D VQ++TFDSYLYK VVP NP+ +K+ TI Sbjct: 337 TYLVLDILQRVFYRTDATREAFVEMCSDIDVQKLTFDSYLYKTVVPANPLVQMKITAKTI 396 Query: 335 GSLVRATAL 309 GSL+R AL Sbjct: 397 GSLLRGNAL 405
>BCHP_RHOCA (P26172) Geranylgeranyl hydrogenase| Length = 391 Score = 54.7 bits (130), Expect = 2e-07 Identities = 24/62 (38%), Positives = 40/62 (64%) Frame = -1 Query: 512 YKVLDILQKVFYRSNAAREAFVKMCADDYVQRMTFDSYLYKRVVPGNPIEDIKLAVNTIG 333 +KVL ++Q +Y S+ RE FV +C D VQRMTF+SY+ K++ P++++K+ + Sbjct: 321 FKVLRMMQDKYYHSDDRRERFVSLCHDVDVQRMTFESYMNKKMTKFQPLKNLKIGFKNLA 380 Query: 332 SL 327 L Sbjct: 381 HL 382
>OL56_STRAT (Q07017) Oleandomycin polyketide synthase, modules 5 and 6| Length = 3519 Score = 35.0 bits (79), Expect = 0.13 Identities = 31/87 (35%), Positives = 43/87 (49%), Gaps = 12/87 (13%) Frame = +3 Query: 288 ELPHLPAQR------GGPDEAADGVDSELDVL--DGVARHDALV---EVAVEGHPLHVVV 434 +LP P QR G P +A+GVD E D + D V R D++ E+ ++ LH V+ Sbjct: 2554 DLPTYPFQRQRFWLDGSPASSANGVDGEADAMIWDAVEREDSVAVAEELGIDAEALHTVL 2613 Query: 435 GAHLHERLPRRVGAVEH-LLQDVQHLV 512 A R R VEH LQD ++ V Sbjct: 2614 PALSSWRRRR----VEHRRLQDWRYRV 2636
>HIS5_NEIG1 (Q5FA21) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 32.0 bits (71), Expect = 1.1 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNTKIFLSGDPDRVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>FILA_MOUSE (P11088) Filaggrin (Fragment)| Length = 336 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 3/33 (9%) Frame = -3 Query: 375 QPHRGHQARCQH---HRQPRQGHRAAPGDGEAH 286 + RGHQ + QH H QP GHR G H Sbjct: 173 EQQRGHQHQHQHQHEHEQPESGHRQQQSSGRGH 205
>RAA3_CHLRE (Q9FEC4) Trans-splicing factor Raa3, chloroplast precursor| Length = 1783 Score = 31.2 bits (69), Expect = 1.8 Identities = 27/109 (24%), Positives = 42/109 (38%), Gaps = 11/109 (10%) Frame = +3 Query: 36 SNIGV--------LQQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRS 191 SN+GV L +RR V+ T +W+ PLP + + S Sbjct: 373 SNVGVNGASPQERLMAARRAVV------TMQWNTHLGRRGRSFAPLPTGGMSIATSAASS 426 Query: 192 AADLCYTDRSAAASSNPSRMSG---TFPVCRRSQGELPHLPAQRGGPDE 329 + + S SN + S + PV ++ E PH+P GGP + Sbjct: 427 STSSASSSSSMNDGSNAKKTSDAAVSLPVGQQPAAEQPHVPTAPGGPSQ 475
>HIS5_NEIMA (Q9JVH3) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 31.2 bits (69), Expect = 1.8 Identities = 22/55 (40%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332 LKSVR+A L + S +P R+S V QG +P A RGG DEA Sbjct: 17 LKSVRTAGQLAGKNVEIFLSGDPERVSRADKVIFPGQGAMPDCMAALTRGGLDEA 71
>CK5P2_MOUSE (Q8K389) CDK5 regulatory subunit-associated protein 2 (CDK5| activator-binding protein C48) Length = 1822 Score = 30.8 bits (68), Expect = 2.4 Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 2/60 (3%) Frame = -3 Query: 363 GHQARCQHHRQPR--QGHRAAPGDGEAHLVIADTPETSLTSCLGCSKLRRIDRYSRDPRP 190 G AR + H Q +G R G+ H ++ ++PE S + L ++ SRDP+P Sbjct: 1324 GKSARVEPHPQNELLKGLRTVEGNLPYHHLLPESPEPSASHALSDDEMSEKSFLSRDPKP 1383
>HIS5_NEIMB (Q9K0H2) Imidazole glycerol phosphate synthase subunit hisH (EC| 2.4.2.-) (IGP synthase glutamine amidotransferase subunit) (IGP synthase subunit hisH) (ImGP synthase subunit hisH) (IGPS subunit hisH) Length = 212 Score = 30.0 bits (66), Expect = 4.0 Identities = 21/55 (38%), Positives = 27/55 (49%), Gaps = 2/55 (3%) Frame = +3 Query: 174 LKSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPHLPA--QRGGPDEA 332 LKSVR+A L + S +P R+S V QG +P A +R G DEA Sbjct: 17 LKSVRTAGQLAGKNTEIFLSGDPDRVSRADKVIFPGQGAMPDCMAALKRDGLDEA 71
>PDM1_DROME (P31368) Protein nubbin (Protein twain) (POU domain protein 1)| (PDM-1) (dPOU-19) (dOCT1) Length = 601 Score = 30.0 bits (66), Expect = 4.0 Identities = 20/88 (22%), Positives = 35/88 (39%), Gaps = 3/88 (3%) Frame = -3 Query: 318 HRAAPGDGEAHL---VIADTPETSLTSCLGCSKLRRIDRYSRDPRPIERI*GRGDENKEV 148 H A+P D + L ++ TP ++ + + + R I R SR P P++ D+N Sbjct: 9 HTASPEDNKNSLKRDLLKSTPTSAREAAVHIMQNRYISRLSRSPSPLQSNASDCDDNNSS 68 Query: 147 MASIERSCLGRTCPIFLYGDVQTSEQFV 64 + + C P Q Q + Sbjct: 69 VGTSSDRCRSPLSPALSLSHQQAKRQLM 96
>RPOC_MYCTU (P0A674) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 94 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCPA (Q73SE3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 94 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCLE (P30761) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 94 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>RPOC_MYCBO (P0A675) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1316 Score = 29.6 bits (65), Expect = 5.3 Identities = 19/57 (33%), Positives = 26/57 (45%) Frame = +1 Query: 94 VQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264 V NG G K R L R + S ++P + A+P+ PP+LR GRF Sbjct: 280 VIRNGKGQKKLRALKRLKVVAAFQQSGNSPMGMV-LDAVPVIPPELRPMVQLDGGRF 335
>VGLB_PRVIF (P08355) Glycoprotein GII precursor| Length = 913 Score = 29.6 bits (65), Expect = 5.3 Identities = 17/50 (34%), Positives = 25/50 (50%) Frame = +3 Query: 225 AASSNPSRMSGTFPVCRRSQGELPHLPAQRGGPDEAADGVDSELDVLDGV 374 AAS++P+ +G P ++ L + A GP EA DG +LD V Sbjct: 64 AASASPTPGTGATPNDVSAEASLEEIEAFSPGPSEAPDGEYGDLDARTAV 113
>RN139_HUMAN (Q8WU17) RING finger protein 139 (Translocation in renal carcinoma| on chromosome 8) Length = 664 Score = 29.3 bits (64), Expect = 6.9 Identities = 25/96 (26%), Positives = 37/96 (38%), Gaps = 10/96 (10%) Frame = +3 Query: 126 TTSRSTPLPLYSHLLCLKSVRSAADLC-------YTDRSAAASSNPSRMSGTFPVCRRSQ 284 T++R TP Y H LCL+ D C Y + +SN S +G P + Sbjct: 556 TSARITPCNHYFHALCLRKWLYIQDTCPMCHQKVYIEDDIKDNSNVSNNNGFIPPNETPE 615 Query: 285 GELPHLPAQRGGPDEAADGVDSELDV---LDGVARH 383 + A+ D D + DV +GV +H Sbjct: 616 EAVREAAAESDRELNEDDSTDCDDDVQRERNGVIQH 651
>GLI1_XENLA (Q91690) Zinc finger protein GLI1 (GLI-1) (Fragment)| Length = 1360 Score = 29.3 bits (64), Expect = 6.9 Identities = 17/40 (42%), Positives = 23/40 (57%) Frame = +3 Query: 231 SSNPSRMSGTFPVCRRSQGELPHLPAQRGGPDEAADGVDS 350 +S S MS + V RRS P+LP QR G ++ + VDS Sbjct: 591 NSTTSTMSSAYTVSRRSSVVSPYLPNQRAG--DSGNMVDS 628
>ARGB_SYNPX (Q7U5C7) Acetylglutamate kinase (EC 2.7.2.8) (NAG kinase) (AGK)| (N-acetyl-L-glutamate 5-phosphotransferase) Length = 293 Score = 29.3 bits (64), Expect = 6.9 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = -3 Query: 312 AAPGDGEAHLVIADTPETSLTSCLGCSKL 226 A PGDG AH + ADT L + L KL Sbjct: 177 ATPGDGRAHNINADTVAGELAAALEAEKL 205
>ZN592_HUMAN (Q92610) Zinc finger protein 592| Length = 1267 Score = 29.3 bits (64), Expect = 6.9 Identities = 15/48 (31%), Positives = 20/48 (41%) Frame = -3 Query: 375 QPHRGHQARCQHHRQPRQGHRAAPGDGEAHLVIADTPETSLTSCLGCS 232 +P GH + H ++P G APG V + SL C CS Sbjct: 1083 KPPGGHSPQVNHLKRPVSGVGDAPGTSNGATVSSTKRHKSLFQCAKCS 1130
>ALG1_HUMAN (Q9BT22) Chitobiosyldiphosphodolichol beta-mannosyltransferase (EC| 2.4.1.142) (GDP-mannose-dolichol diphosphochitobiose mannosyltransferase) (GDP-Man:GlcNAc2-PP-dolichol mannosyltransferase) (Beta-1,4-mannosyltransferase) (Mannosyltransferase- Length = 464 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/45 (35%), Positives = 23/45 (51%) Frame = +1 Query: 88 ITVQENGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDP 222 +TV + K PLD +H LF+ + S +PF R + P DP Sbjct: 212 VTVYDKPASFFKETPLDLQHRLFMKLGSMHSPF---RARSEPEDP 253
>POL_HV1MA (P04588) Gag-Pol polyprotein (Pr160Gag-Pol) [Contains: Matrix| protein p17 (MA); Capsid protein p24 (CA); p2 spacer peptide; Nucleocapsid protein* (NC*); Transframe peptide (TF) (p6 pol); Protease (EC 3.4.23.16) (Retropepsin) (PR); Reverse trans Length = 1439 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +3 Query: 177 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 299 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>GAG_HV1MA (P04594) Gag polyprotein (Pr55Gag) [Contains: Matrix protein p17| (MA); Capsid protein p24 (CA); Spacer peptide p2; Nucleocapsid protein p7 (NC); Spacer peptide p1; p6] Length = 504 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/41 (29%), Positives = 23/41 (56%) Frame = +3 Query: 177 KSVRSAADLCYTDRSAAASSNPSRMSGTFPVCRRSQGELPH 299 KS + ++AAA+ N S +S +P+ + +QG++ H Sbjct: 109 KSRQKTQQAAAAQQAAAATKNSSSVSQNYPIVQNAQGQMIH 149
>NKTR_MOUSE (P30415) NK-tumor recognition protein (Natural-killer cells| cyclophilin-related protein) (NK-TR protein) Length = 1453 Score = 28.9 bits (63), Expect = 9.0 Identities = 21/65 (32%), Positives = 29/65 (44%) Frame = +3 Query: 54 QQSRRTVLKSEHHRTRKWDRFDQDTTSRSTPLPLYSHLLCLKSVRSAADLCYTDRSAAAS 233 ++SR + S H R W + DQD S ST S+ S +D + RS A S Sbjct: 483 RRSRASSSSSHHSSKRDWSKSDQDDGSASTHSSRDSY---RSKSHSRSDSRGSSRSRAVS 539 Query: 234 SNPSR 248 + SR Sbjct: 540 KSSSR 544
>RPOC_CORGL (Q8NT25) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP| beta' subunit) (Transcriptase beta' chain) (RNA polymerase beta' subunit) Length = 1333 Score = 28.9 bits (63), Expect = 9.0 Identities = 19/54 (35%), Positives = 26/54 (48%) Frame = +1 Query: 103 NGTGSTKTRPLDRRHYLFILISSASNPFDRPRISAIPIDPPQLRATQAGCQGRF 264 NG G K R L R + S ++P ++AIP+ PP+LR GRF Sbjct: 283 NGKGQKKMRALKRLKVVAAFQRSGNDPAGMV-LNAIPVIPPELRPMVQLDGGRF 335 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 72,123,994 Number of Sequences: 219361 Number of extensions: 1484360 Number of successful extensions: 5220 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 5042 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5213 length of database: 80,573,946 effective HSP length: 104 effective length of database: 57,760,402 effective search space used: 3985467738 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
