Clone Name | rbah61m10 |
---|---|
Clone Library Name | barley_pub |
>gb|DQ139268.1| Triticum aestivum geranylgeranyl hydrogenase mRNA, complete cds Length = 1704 Score = 716 bits (361), Expect = 0.0 Identities = 411/427 (96%), Gaps = 3/427 (0%) Strand = Plus / Minus Query: 95 tacaagaaaatgggacaggttcgaccaagacacgacctctcgatcgacgccattacctct 154 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| Sbjct: 1666 tacaagaaaaccggacaggatcgaccaagacacgacctctcgatcgacgccattacct-- 1609 Query: 155 ttattctcatctcctctgcctcaaatccgttcgatcggccgcggatctctgctataccga 214 ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct: 1608 -tattctcatctcctctgcctcaaatccgttcgatcagccgcggatctctgctataccga 1550 Query: 215 tcgatccgccgcagcttcgagcaacccaagcaggatgtcagggacgtttccggtgtgtcg 274 ||||||||||||||||||||| ||||||||||| ||||||| |||||||||| | |||| Sbjct: 1549 ccgatccgccgcagcttcgagcgacccaagcaggctgtcaggaacgtttccggcgggtcg 1490 Query: 275 gcgatcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgc 334 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1489 gcgatcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgc 1430 Query: 335 cgatggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgt 394 ||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| Sbjct: 1429 cgatggtgttgacggcgagcttgatgtcctcgatggggttgcccgccacgacgcgcttgt 1370 Query: 395 agaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacg 454 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct: 1369 agaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatctccacgaacg 1310 Query: 455 cctcccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacg 514 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1309 cctcccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacg 1250 Query: 515 tcggcca 521 ||||||| Sbjct: 1249 tcggcca 1243 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 75 ctgaagtctgaacatcaccgt 95 ||||||||||||||||||||| Sbjct: 1704 ctgaagtctgaacatcaccgt 1684
>gb|AY104414.1| Zea mays PCO077228 mRNA sequence Length = 1117 Score = 371 bits (187), Expect = 2e-99 Identities = 229/243 (94%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| |||||||||||||||| |||||||||||||||||||||||||| Sbjct: 659 tcacaaggtgaccttctccatctcccggcgcagtgcggtggccctgacgaggctgccgat 600 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 599 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 540 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 ||||||||||||||||||| |||||||||||||||||||||||||| |||||| ||||| Sbjct: 539 gtagctgtcgaaggtcatcttctgcacgtagtcgtcggcgcacatctccacgaaggcctc 480 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 ||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 479 gcgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtaagtggg 420 Query: 519 cca 521 ||| Sbjct: 419 cca 417
>ref|XM_467759.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1778 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 1472 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 1413 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1412 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 1353 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 1352 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 1293 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 1292 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 1233 Query: 519 cca 521 ||| Sbjct: 1232 cca 1230
>ref|XM_506969.1| PREDICTED Oryza sativa (japonica cultivar-group), OJ1734_E02.38 mRNA Length = 1828 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 1472 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 1413 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1412 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 1353 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 1352 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 1293 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 1292 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 1233 Query: 519 cca 521 ||| Sbjct: 1232 cca 1230
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 31266938 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 31266879 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 31266878 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 31266819 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 31266818 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 31266759 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 31266758 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 31266699 Query: 519 cca 521 ||| Sbjct: 31266698 cca 31266696
>dbj|AP005297.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1734_E02 Length = 168566 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 146781 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 146722 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 146721 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 146662 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 146661 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 146602 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 146601 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 146542 Query: 519 cca 521 ||| Sbjct: 146541 cca 146539
>dbj|AP004114.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1118_G04 Length = 134464 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 36806 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 36747 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 36746 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 36687 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 36686 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 36627 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 36626 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 36567 Query: 519 cca 521 ||| Sbjct: 36566 cca 36564
>dbj|AK061968.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-042-H01, full insert sequence Length = 1828 Score = 307 bits (155), Expect = 2e-80 Identities = 221/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 1472 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 1413 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1412 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 1353 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| ||||||||||| Sbjct: 1352 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgacgaacgcctc 1293 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 1292 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 1233 Query: 519 cca 521 ||| Sbjct: 1232 cca 1230
>dbj|AK098873.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001C18, full insert sequence Length = 1778 Score = 299 bits (151), Expect = 5e-78 Identities = 220/243 (90%) Strand = Plus / Minus Query: 279 tcacaaggtgagcttccccatctcccggcgcagcgcggtggccctgacgaggctgccgat 338 ||||||||||| |||| ||||||| ||||| || |||||||| | ||||||||||||||| Sbjct: 1473 tcacaaggtgaccttctccatctcgcggcggagggcggtggcgcggacgaggctgccgat 1414 Query: 339 ggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtagag 398 ||||||||| |||||||||||||| |||| ||||||||||||||||||||||||||||| Sbjct: 1413 ggtgttgacggcgagcttgatgtcgtcgagcgggttgcccggcacgacgcgcttgtagag 1354 Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 |||||||||||||||||||| ||| |||||||||||||||||||||| |||||||||| Sbjct: 1353 gtagctgtcgaaggtcatcctctggacgtagtcgtcggcgcacatctcgtcgaacgcctc 1294 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 || || |||||||||||||||||||||||||| || | ||| ||||||||||||||||| Sbjct: 1293 gcgggcggcgttggagcggtagaacaccttctggagcacgtcgagcaccttgtacgtcgg 1234 Query: 519 cca 521 ||| Sbjct: 1233 cca 1231
>gb|AF055296.1|AF055296 Zantedeschia aethiopica geranylgeranyl reductase mRNA, partial cds Length = 995 Score = 204 bits (103), Expect = 2e-49 Identities = 172/195 (88%) Strand = Plus / Minus Query: 327 gaggctgccgatggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgac 386 ||||||||||||||| ||||| || ||||||| |||||| | |||| |||| || || || Sbjct: 807 gaggctgccgatggtcttgacggcaagcttgaggtcctccagggggctgccggggaccac 748 Query: 387 gcgcttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatctt 446 |||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct: 747 ccgcttgtacaggtagctgtcgaaggtcatcttctgcacgtactcgtcggcgcacatctc 688 Query: 447 cacgaacgcctcccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcac 506 |||||| |||||||| || | |||||||||||||||||||||||||| | ||||||||| Sbjct: 687 cacgaaggcctcccgggcgggattggagcggtagaacaccttctgcagcacgtccagcac 628 Query: 507 cttgtacgtcggcca 521 ||||||||||||||| Sbjct: 627 cttgtacgtcggcca 613
>dbj|AK108809.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-151-D09, full insert sequence Length = 2726 Score = 109 bits (55), Expect = 9e-21 Identities = 121/143 (84%) Strand = Plus / Minus Query: 370 gggttgcccggcacgacgcgcttgtagaggtagctgtcgaaggtcatccgctgcacgtag 429 |||||||| |||||||| |||||| || |||||||| ||||||||| |||||||||| Sbjct: 1427 gggttgcctggcacgacagtcttgtacagatagctgtcaaaggtcatcttctgcacgtag 1368 Query: 430 tcgtcggcgcacatcttcacgaacgcctcccgcgccgcgttggagcggtagaacaccttc 489 ||| ||||||||| ||| || ||||| || || | |||| |||||||||||||||| Sbjct: 1367 ctgtcctcgcacatctccacaaaggcctcgcgagctgggttgctgcggtagaacaccttc 1308 Query: 490 tgcaggatgtccagcaccttgta 512 ||||||||||||||||||||||| Sbjct: 1307 tgcaggatgtccagcaccttgta 1285
>gb|AF069318.1|AF069318 Mesembryanthemum crystallinum geranylgeranyl hydrogenase mRNA, complete cds Length = 1639 Score = 101 bits (51), Expect = 2e-18 Identities = 105/123 (85%) Strand = Plus / Minus Query: 399 gtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 ||||||||| ||||||||| |||||| || ||||| || ||||||| |||||||||||| Sbjct: 1319 gtagctgtcaaaggtcatcttctgcacatactcgtccgcacacatctccacgaacgcctc 1260 Query: 459 ccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtcgg 518 | |||| ||||||||||||||||||||||||||| || || || |||||||| || || Sbjct: 1259 tcttgccgggttggagcggtagaacaccttctgcagaatatcaaggaccttgtaggtagg 1200 Query: 519 cca 521 ||| Sbjct: 1199 cca 1197
>gb|AF545585.1| Xerophyta humilis geranyl-geranyl reductase mRNA, partial cds Length = 653 Score = 97.6 bits (49), Expect = 3e-17 Identities = 151/185 (81%) Strand = Plus / Minus Query: 337 atggtgttgacagcgagcttgatgtcctcgatggggttgcccggcacgacgcgcttgtag 396 |||||||| ||||| ||||||| || || |||||||| || ||||| || |||||| Sbjct: 551 atggtgttcacagcaagcttgagatcgtcaatggggttccctggcacaactttcttgtac 492 Query: 397 aggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcc 456 | ||||||||| || |||||| ||| || || | |||||||||||||| ||||| ||| Sbjct: 491 aagtagctgtcaaacgtcatcttctgaacatacttgtcggcgcacatctcgacgaaggcc 432 Query: 457 tcccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcaccttgtacgtc 516 |||| ||||| ||| || ||||||||||||||||||| | ||| |||||||| |||||| Sbjct: 431 tccctcgccgggttcgaccggtagaacaccttctgcaatacgtcgagcaccttatacgtc 372 Query: 517 ggcca 521 ||||| Sbjct: 371 ggcca 367
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 85.7 bits (43), Expect = 1e-13 Identities = 103/123 (83%) Strand = Plus / Plus Query: 390 cttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcac 449 |||||||||||||||||| |||||||||| |||||||| |||||||||||||| ||| Sbjct: 1844887 cttgtagaggtagctgtcaaaggtcatcctctgcacgtcccggtcggcgcacatctccac 1844946 Query: 450 gaacgcctcccgcgccgcgttggagcggtagaacaccttctgcaggatgtccagcacctt 509 || || || || | || ||||| |||||||||||| |||||||||||||| ||||| Sbjct: 1844947 aaaggcttcgcgggtggcattggaacggtagaacacccgctgcaggatgtccaagacctt 1845006 Query: 510 gta 512 ||| Sbjct: 1845007 gta 1845009
>gb|CP000239.1| Synechococcus sp. JA-3-3Ab, complete genome Length = 2932766 Score = 73.8 bits (37), Expect = 5e-10 Identities = 82/97 (84%) Strand = Plus / Minus Query: 390 cttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcac 449 |||||||||||||||||| ||||||||||||||||| | ||| |||||||||| ||| Sbjct: 69718 cttgtagaggtagctgtcaaaggtcatccgctgcacatcccggtcagcgcacatctccac 69659 Query: 450 gaacgcctcccgcgccgcgttggagcggtagaacacc 486 || ||||| || | |||||||| |||||||||||| Sbjct: 69658 aaaggcctcgcgggtggcgttggaacggtagaacacc 69622
>emb|BX569692.1| Synechococcus sp. WH8102 complete genome; segment 4/7 Length = 345997 Score = 60.0 bits (30), Expect = 8e-06 Identities = 33/34 (97%) Strand = Plus / Plus Query: 380 gcacgacgcgcttgtagaggtagctgtcgaaggt 413 |||| ||||||||||||||||||||||||||||| Sbjct: 41166 gcaccacgcgcttgtagaggtagctgtcgaaggt 41199
>ref|NM_187998.1| Oryza sativa (japonica cultivar-group), Ozsa8418 predicted mRNA Length = 1359 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 388 cgcttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttc 447 ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||| | Sbjct: 1226 cgcttgtgcaggtagctgtcgaacgtccggcgctgcacgtgctcgtcggcgcacatctcc 1167 Query: 448 acgaacgcctccc 460 || | |||||||| Sbjct: 1166 accagcgcctccc 1154
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 388 cgcttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttc 447 ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||| | Sbjct: 9018436 cgcttgtgcaggtagctgtcgaacgtccggcgctgcacgtgctcgtcggcgcacatctcc 9018377 Query: 448 acgaacgcctccc 460 || | |||||||| Sbjct: 9018376 accagcgcctccc 9018364
>dbj|AP001383.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0453A06 Length = 154378 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 388 cgcttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttc 447 ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||| | Sbjct: 126191 cgcttgtgcaggtagctgtcgaacgtccggcgctgcacgtgctcgtcggcgcacatctcc 126132 Query: 448 acgaacgcctccc 460 || | |||||||| Sbjct: 126131 accagcgcctccc 126119
>dbj|AP001080.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, clone:P0499C11 Length = 151369 Score = 58.0 bits (29), Expect = 3e-05 Identities = 62/73 (84%) Strand = Plus / Minus Query: 388 cgcttgtagaggtagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttc 447 ||||||| |||||||||||||| ||| |||||||||| |||||||||||||||| | Sbjct: 47443 cgcttgtgcaggtagctgtcgaacgtccggcgctgcacgtgctcgtcggcgcacatctcc 47384 Query: 448 acgaacgcctccc 460 || | |||||||| Sbjct: 47383 accagcgcctccc 47371
>dbj|AP008231.1| Synechococcus elongatus PCC 6301 DNA, complete genome Length = 2696255 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Minus Query: 391 ttgtagaggtagctgtcgaaggtcatccgctgcac 425 ||||||||||||||||||||||||| |||||||| Sbjct: 1243441 ttgtagaggtagctgtcgaaggtcagacgctgcac 1243407
>gb|CP000100.1| Synechococcus elongatus PCC 7942, complete genome Length = 2695903 Score = 54.0 bits (27), Expect = 5e-04 Identities = 33/35 (94%) Strand = Plus / Plus Query: 391 ttgtagaggtagctgtcgaaggtcatccgctgcac 425 ||||||||||||||||||||||||| |||||||| Sbjct: 377439 ttgtagaggtagctgtcgaaggtcagacgctgcac 377473
>gb|AY230212.1| Prunus persica geranylgeranyl reductase mRNA, complete cds Length = 1621 Score = 52.0 bits (26), Expect = 0.002 Identities = 77/94 (81%) Strand = Plus / Minus Query: 400 tagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctcc 459 |||||||| ||||||||| |||||| || || || |||||||||| ||| || |||||| Sbjct: 1320 tagctgtcaaaggtcatcttctgcacatactcatctgcgcacatctccacaaaagcctcc 1261 Query: 460 cgcgccgcgttggagcggtagaacaccttctgca 493 | ||||| ||| || | || ||||||||||||| Sbjct: 1260 ctcgccgggttcgacctataaaacaccttctgca 1227
>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome Length = 4659019 Score = 50.1 bits (25), Expect = 0.007 Identities = 46/53 (86%) Strand = Plus / Minus Query: 406 tcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaacgcctc 458 ||||| |||| ||||||||||| | |||||||||||||| ||||||||||| Sbjct: 4609933 tcgaacgtcagccgctgcacgtcgcggtcggcgcacatctcgacgaacgcctc 4609881
>emb|AL359834.18| Human DNA sequence from clone RP11-121P12 on chromosome 1 Contains the 3' end of a novel gene, complete sequence Length = 70248 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 149 acctctttattctcatctcctct 171 ||||||||||||||||||||||| Sbjct: 4992 acctctttattctcatctcctct 4970
>ref|NM_141992.1| Drosophila melanogaster CG17327-RB, transcript variant B (CG17327), mRNA Length = 700 Score = 46.1 bits (23), Expect = 0.11 Identities = 26/27 (96%) Strand = Plus / Minus Query: 486 cttctgcaggatgtccagcaccttgta 512 |||||||||||||||| |||||||||| Sbjct: 256 cttctgcaggatgtcctgcaccttgta 230
>gb|CP000097.1| Synechococcus sp. CC9902, complete genome Length = 2234828 Score = 44.1 bits (22), Expect = 0.45 Identities = 25/26 (96%) Strand = Plus / Minus Query: 388 cgcttgtagaggtagctgtcgaaggt 413 |||||||||||||||||||| ||||| Sbjct: 1202460 cgcttgtagaggtagctgtcaaaggt 1202435
>gb|AC154635.2| Mus musculus BAC clone RP23-299N21 from 13, complete sequence Length = 157982 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 152 tctttattctcatctcctctgc 173 |||||||||||||||||||||| Sbjct: 61750 tctttattctcatctcctctgc 61771
>gb|CP000086.1| Burkholderia thailandensis E264 chromosome I, complete sequence Length = 3809201 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Plus Query: 411 ggtcatccgctgcacgtagtcg 432 |||||||||||||||||||||| Sbjct: 3203911 ggtcatccgctgcacgtagtcg 3203932
>gb|CP000112.1| Desulfovibrio desulfuricans G20, complete genome Length = 3730232 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 487 ttctgcaggatgtccagcacc 507 ||||||||||||||||||||| Sbjct: 3387838 ttctgcaggatgtccagcacc 3387858
>ref|XM_475167.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 4329 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 gaacaccttctgcaggatgtc 500 ||||||||||||||||||||| Sbjct: 1272 gaacaccttctgcaggatgtc 1252
>gb|AC136222.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088M05, complete sequence Length = 153368 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 gaacaccttctgcaggatgtc 500 ||||||||||||||||||||| Sbjct: 47077 gaacaccttctgcaggatgtc 47057
>gb|BT013406.1| Lycopersicon esculentum clone 135721R, mRNA sequence Length = 1127 Score = 42.1 bits (21), Expect = 1.8 Identities = 45/53 (84%) Strand = Plus / Minus Query: 400 tagctgtcgaaggtcatccgctgcacgtagtcgtcggcgcacatcttcacgaa 452 ||||||||||| |||||| |||||| || || || |||||||||| |||||| Sbjct: 914 tagctgtcgaatgtcatcttctgcacatactcatcagcgcacatctccacgaa 862
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 cgaacgcctcccgcgccgcgt 469 ||||||||||||||||||||| Sbjct: 4287448 cgaacgcctcccgcgccgcgt 4287428
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 480 gaacaccttctgcaggatgtc 500 ||||||||||||||||||||| Sbjct: 18253865 gaacaccttctgcaggatgtc 18253845
>dbj|AP005919.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0554A06 Length = 165311 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Minus Query: 449 cgaacgcctcccgcgccgcgt 469 ||||||||||||||||||||| Sbjct: 132669 cgaacgcctcccgcgccgcgt 132649
>ref|XM_521035.1| PREDICTED: Pan troglodytes similar to PCTAIRE protein kinase 1; serine/threonine-protein kinase (LOC465602), mRNA Length = 2547 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 2062 acccaagcaggatgtcaggg 2043
>gb|CP000110.1| Synechococcus sp. CC9605, complete genome Length = 2510659 Score = 40.1 bits (20), Expect = 7.0 Identities = 26/28 (92%) Strand = Plus / Plus Query: 388 cgcttgtagaggtagctgtcgaaggtca 415 ||||| || ||||||||||||||||||| Sbjct: 1160168 cgcttatacaggtagctgtcgaaggtca 1160195
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome Length = 2364842 Score = 40.1 bits (20), Expect = 7.0 Identities = 32/36 (88%) Strand = Plus / Plus Query: 405 gtcgaaggtcatccgctgcacgtagtcgtcggcgca 440 ||||||||| ||||||||||||| ||||| ||||| Sbjct: 21265 gtcgaaggtgatccgctgcacgtcatcgtcagcgca 21300
>gb|AC099707.14| Mus musculus chromosome 1, clone RP23-329C7, complete sequence Length = 204557 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 155 ttattctcatctcctctgcc 174 |||||||||||||||||||| Sbjct: 106842 ttattctcatctcctctgcc 106823
>ref|NM_006201.3| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 1, mRNA Length = 3130 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1402 acccaagcaggatgtcaggg 1383
>ref|NM_033018.2| Homo sapiens PCTAIRE protein kinase 1 (PCTK1), transcript variant 2, mRNA Length = 3172 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1444 acccaagcaggatgtcaggg 1425
>ref|XM_472947.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1158 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 193 ccatctcccggcgcagcgcg 174
>gb|BC006190.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone MGC:10347 IMAGE:3830397), complete cds Length = 2987 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1258 acccaagcaggatgtcaggg 1239
>gb|AC002983.1| Arabidopsis thaliana BAC T3F12 from chromosome IV near 24 cM, complete sequence Length = 107183 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 24 attattcacatatcgaatat 43 |||||||||||||||||||| Sbjct: 16388 attattcacatatcgaatat 16407
>gb|BC001048.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA (cDNA clone MGC:1330 IMAGE:3504276), complete cds Length = 2176 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1444 acccaagcaggatgtcaggg 1425
>gb|BC015607.2| Homo sapiens PCTAIRE protein kinase 1, transcript variant 2, mRNA (cDNA clone MGC:23461 IMAGE:4762081), complete cds Length = 3142 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1411 acccaagcaggatgtcaggg 1392
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 302 cccggcgcagcgcggtggcc 321 |||||||||||||||||||| Sbjct: 102385 cccggcgcagcgcggtggcc 102404
>gb|BC009852.2| Homo sapiens PCTAIRE protein kinase 1, mRNA (cDNA clone IMAGE:3632161), partial cds Length = 1484 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 704 acccaagcaggatgtcaggg 685
>ref|XM_546338.2| PREDICTED: Canis familiaris similar to F-box only protein 4 isoform 1 (LOC489220), mRNA Length = 1440 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 319 gccctgacgaggctgccgat 338 |||||||||||||||||||| Sbjct: 172 gccctgacgaggctgccgat 191
>emb|AL096791.13|HSJ659F15 Human DNA sequence from clone RP4-659F15 on chromosome Xp11.21-11.4 Contains the PCTK1 gene for PCTAIRE protein kinase 1, the USP11 gene for ubiquitin specific protease 11 (UXH1) and a CpG Island, complete sequence Length = 41087 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 6361 acccaagcaggatgtcaggg 6342
>emb|X66363.1|HSSTHPKD H.sapiens mRNA PCTAIRE-1 for serine/threonine protein kinase Length = 1745 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1129 acccaagcaggatgtcaggg 1110
>emb|AL939113.1|SCO939113 Streptomyces coelicolor A3(2) complete genome; segment 10/29 Length = 310550 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 444 cttcacgaacgcctcccgcgccgc 467 ||||||||||| |||||||||||| Sbjct: 127833 cttcacgaacggctcccgcgccgc 127856
>emb|AL606998.3|OSJN00125 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ000223_09, complete sequence Length = 120583 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 94394 ccatctcccggcgcagcgcg 94375
>emb|AL161512.2|ATCHRIV24 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 24 Length = 199362 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 attattcacatatcgaatat 43 |||||||||||||||||||| Sbjct: 130792 attattcacatatcgaatat 130773
>emb|AL161813.1|ATT32A17 Arabidopsis thaliana DNA chromosome 4, BAC clone T32A17 (ESSA project) Length = 104386 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 24 attattcacatatcgaatat 43 |||||||||||||||||||| Sbjct: 6521 attattcacatatcgaatat 6502
>emb|AJ821794.1| Guillardia theta partial mRNA for geranylgeranyl reductase (ggr gene) Length = 1287 Score = 40.1 bits (20), Expect = 7.0 Identities = 35/40 (87%) Strand = Plus / Minus Query: 454 gcctcccgcgccgcgttggagcggtagaacaccttctgca 493 ||||| || |||| ||||||||||||||| |||| ||||| Sbjct: 1076 gcctcacgggccgggttggagcggtagaagacctgctgca 1037
>gb|BT007518.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 mRNA, partial cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>gb|BT006827.1| Homo sapiens PCTAIRE protein kinase 1 mRNA, complete cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>emb|BX248402.13| Zebrafish DNA sequence from clone CH211-226P14 in linkage group 14, complete sequence Length = 137130 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttctgcaggatgtccagcac 506 |||||||||||||||||||| Sbjct: 129255 ttctgcaggatgtccagcac 129236
>dbj|AK131486.1| Homo sapiens cDNA FLJ16665 fis, clone THYMU2031249, highly similar to SERINE/THREONINE-PROTEIN KINASE PCTAIRE-1 (EC 2.7.1.-) Length = 3016 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 2142 acccaagcaggatgtcaggg 2123
>emb|CR620813.1| full-length cDNA clone CS0DC008YH12 of Neuroblastoma Cot 25-normalized of Homo sapiens (human) Length = 1574 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1400 acccaagcaggatgtcaggg 1381
>gb|AY335624.1| Synthetic construct Homo sapiens PCTAIRE protein kinase 1 (PCTK1) mRNA, partial cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>emb|BX004990.12| Zebrafish DNA sequence from clone DKEY-12H12, complete sequence Length = 201461 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 487 ttctgcaggatgtccagcac 506 |||||||||||||||||||| Sbjct: 84223 ttctgcaggatgtccagcac 84242
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 24271982 ccatctcccggcgcagcgcg 24271963
>gb|AE004613.1| Pseudomonas aeruginosa PAO1, section 174 of 529 of the complete genome Length = 20342 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Minus Query: 298 atctcccggcgcagcgcggtggcc 321 |||||||||||||||||| ||||| Sbjct: 16482 atctcccggcgcagcgcgctggcc 16459
>gb|AC021045.2|AC021045 Arabidopsis thaliana chromosome I BAC T9L6 genomic sequence, complete sequence Length = 90632 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttagtttatactacattatt 29 |||||||||||||||||||| Sbjct: 6116 ttagtttatactacattatt 6135
>dbj|BA000039.2| Thermosynechococcus elongatus BP-1 DNA, complete genome Length = 2593857 Score = 40.1 bits (20), Expect = 7.0 Identities = 23/24 (95%) Strand = Plus / Plus Query: 390 cttgtagaggtagctgtcgaaggt 413 ||||||||||||||| |||||||| Sbjct: 130884 cttgtagaggtagctatcgaaggt 130907
>emb|AJ535489.3|OSA535489 Oryza sativa (indica cultivar-group) mRNA for RML1 protein Length = 1766 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 195 ccatctcccggcgcagcgcg 176
>gb|AY891941.1| Synthetic construct Homo sapiens clone FLH013086.01L PCTAIRE protein kinase 1 (PCTK1) mRNA, partial cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>gb|AY891940.1| Synthetic construct Homo sapiens clone FLH013085.01L PCTAIRE protein kinase 1 (PCTK1) mRNA, partial cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>gb|AY889470.1| Synthetic construct Homo sapiens clone FLH013089.01X PCTAIRE protein kinase 1 (PCTK1) mRNA, complete cds Length = 1491 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1006 acccaagcaggatgtcaggg 987
>gb|AC006424.5|AC006424 Arabidopsis thaliana chromosome I BAC F9L11 genomic sequence, complete sequence Length = 122836 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 10 ttagtttatactacattatt 29 |||||||||||||||||||| Sbjct: 92840 ttagtttatactacattatt 92859
>dbj|AK103296.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033125B02, full insert sequence Length = 1873 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 289 ccatctcccggcgcagcgcg 270
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 482 acaccttctgcaggatgtcc 501 |||||||||||||||||||| Sbjct: 1251208 acaccttctgcaggatgtcc 1251227
>emb|AL627350.3| Oryza sativa genomic DNA, chromosome 4, BAC clone: H0302E05, complete sequence Length = 61795 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 296 ccatctcccggcgcagcgcg 315 |||||||||||||||||||| Sbjct: 420 ccatctcccggcgcagcgcg 401
>gb|AC005599.5|AC005599 Homo sapiens chromosome 4 clone C0026P05 map 4P16, complete sequence Length = 145173 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 487 ttctgcaggatgtccagcac 506 |||||||||||||||||||| Sbjct: 19571 ttctgcaggatgtccagcac 19552
>dbj|AB209465.1| Homo sapiens premature mRNA for Hypothetical protein FLJ16665 variant Length = 3388 Score = 40.1 bits (20), Expect = 7.0 Identities = 20/20 (100%) Strand = Plus / Minus Query: 238 acccaagcaggatgtcaggg 257 |||||||||||||||||||| Sbjct: 1678 acccaagcaggatgtcaggg 1659 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,230,812 Number of Sequences: 3902068 Number of extensions: 3230812 Number of successful extensions: 67704 Number of sequences better than 10.0: 78 Number of HSP's better than 10.0 without gapping: 78 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 67011 Number of HSP's gapped (non-prelim): 689 length of query: 521 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 498 effective length of database: 17,143,297,704 effective search space: 8537362256592 effective search space used: 8537362256592 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)