Clone Name | rbah61m07 |
---|---|
Clone Library Name | barley_pub |
>ref|XM_469567.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1681 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 1305 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 1246 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 1245 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 1186 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 1185 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 1126 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 1125 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 1085
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 28772332 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 28772273 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 28772272 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 28772213 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 28772212 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 28772153 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 28772152 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 28772112
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 28863656 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 28863597 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 28863596 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 28863537 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 28863536 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 28863477 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 28863476 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 28863436
>gb|AC091532.13| Oryza sativa chromosome 3 BAC OSJNBa0078A17 genomic sequence, complete sequence Length = 147344 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 79313 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 79254 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 79253 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 79194 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 79193 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 79134 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 79133 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 79093
>dbj|AK099485.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026C05, full insert sequence Length = 1712 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 1417 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 1358 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 1357 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 1298 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 1297 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 1238 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 1237 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 1197
>dbj|AK060573.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-023-C09, full insert sequence Length = 1392 Score = 240 bits (121), Expect = 4e-60 Identities = 196/221 (88%) Strand = Plus / Minus Query: 285 tagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaaggat 344 ||||||| |||||||||||||||| ||||||| ||||||| |||||||| ||||||||| Sbjct: 1079 tagttggccacaaaatggtacctggtgtccacaaagctctcaacatcccaaaggaaggat 1020 Query: 345 ccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacatac 404 || || || ||||||||||||||||||||||||||||| | ||| ||||||||||||| Sbjct: 1019 ccaaaagtaacagcctctaagatcagccttctcaaccctgcgaaacttatcctgacatgt 960 Query: 405 tcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaat 464 ||||||||||||||||| ||||| ||||| || ||||| |||||||||||||| || ||| Sbjct: 959 tcatccttggaagaatcgactgtgccttcaggtgtgattacaatctctggtttaccaaat 900 Query: 465 agcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 || ||||| ||||||||||||||||||||||| ||| |||| Sbjct: 899 agtgcctcagtgtgcttctcgatgatgccaaatgcctcctt 859
>gb|AY596537.1| Saccharum officinarum clone SCJFLR1035G06, complete sequence Length = 1879 Score = 210 bits (106), Expect = 3e-51 Identities = 193/222 (86%) Strand = Plus / Minus Query: 284 ttagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaagga 343 ||||||||| || |||||||||||||| |||||| ||||||| || ||||||||||| || Sbjct: 1402 ttagttggtcacgaaatggtacctggaatccacaaagctctcaacgtcccagaggaacga 1343 Query: 344 tccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacata 403 |||||| || |||||||| | |||||||||||||| ||||| |||||||| || | || Sbjct: 1342 tccgaaagtaacagcctccaggatcagccttctcagcccggcaaagcttattctaatatg 1283 Query: 404 ctcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaa 463 |||||||||||||||||| ||||| ||||| || ||||| ||||||||||||||||| || Sbjct: 1282 ctcatccttggaagaatcaactgtgccttcaggtgtgattacaatctctggtttcccaaa 1223 Query: 464 tagcgcctctgtgtgcttctcgatgatgccaaacgccacctt 505 |||||| || ||||||||||| ||||||||||| ||| |||| Sbjct: 1222 tagcgcttcagtgtgcttctcaatgatgccaaaggcctcctt 1181
>gb|AY108217.1| Zea mays PCO091909 mRNA sequence Length = 1565 Score = 170 bits (86), Expect = 3e-39 Identities = 179/210 (85%) Strand = Plus / Minus Query: 284 ttagttggtgacaaaatggtacctggagtccacatagctctcgacatcccagaggaagga 343 |||| |||| || |||||||||| ||| |||||| ||||||| || ||||||||||| || Sbjct: 1338 ttagctggtcacgaaatggtaccgggaatccacaaagctctcaacgtcccagaggaacga 1279 Query: 344 tccgaatgtgacagcctctaagatcagccttctcaacccggagaagcttatcctgacata 403 |||||| || |||||||| | |||||||||||||| ||| | ||||||||||| | || Sbjct: 1278 tccgaaggtaacagcctccaggatcagccttctcagcccagcaaagcttatcctaatatg 1219 Query: 404 ctcatccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaa 463 |||||||||||||||||| | || ||||| || ||||||||||||||||| ||||| || Sbjct: 1218 ctcatccttggaagaatcaagggtgccttcaggtgtgatcacaatctctggcttcccaaa 1159 Query: 464 tagcgcctctgtgtgcttctcgatgatgcc 493 |||||| || ||||||||||| |||||||| Sbjct: 1158 tagcgcttccgtgtgcttctcaatgatgcc 1129
>gb|BT014021.1| Lycopersicon esculentum clone 133083F, mRNA sequence Length = 1591 Score = 56.0 bits (28), Expect = 1e-04 Identities = 58/68 (85%) Strand = Plus / Minus Query: 294 acaaaatggtacctggagtccacatagctctcgacatcccagaggaaggatccgaatgtg 353 ||||||||||| || ||||| ||||| ||||| |||||||||||||| || || || || Sbjct: 1392 acaaaatggtatcttgagtcgacataactctcaacatcccagaggaaagacccaaaagtt 1333 Query: 354 acagcctc 361 |||||||| Sbjct: 1332 acagcctc 1325
>gb|AY105683.1| Zea mays PCO091907 mRNA sequence Length = 913 Score = 52.0 bits (26), Expect = 0.002 Identities = 48/54 (88%), Gaps = 1/54 (1%) Strand = Plus / Minus Query: 444 acaatctctggtttcccgaa-tagcgcctctgtgtgcttctcgatgatgccaaa 496 |||||||||| |||||| || |||||| |||||||| ||||||||||| ||||| Sbjct: 806 acaatctctgctttcccaaaatagcgcttctgtgtgtttctcgatgataccaaa 753
>gb|AC161034.23| Medicago truncatula clone mth2-53o24, complete sequence Length = 128806 Score = 50.1 bits (25), Expect = 0.007 Identities = 34/37 (91%) Strand = Plus / Plus Query: 301 ggtacctggagtccacatagctctcgacatcccagag 337 ||||||| |||||||| |||||||| ||||||||||| Sbjct: 23693 ggtacctcgagtccacgtagctctcaacatcccagag 23729
>dbj|AP006699.1| Lotus japonicus genomic DNA, chromosome 2, clone:LjT01N23, TM0490, complete sequence Length = 110636 Score = 50.1 bits (25), Expect = 0.007 Identities = 37/41 (90%) Strand = Plus / Plus Query: 297 aaatggtacctggagtccacatagctctcgacatcccagag 337 ||||||||||| ||||| || |||||||| ||||||||||| Sbjct: 93145 aaatggtaccttgagtcaacgtagctctctacatcccagag 93185
>ref|NM_112660.3| Arabidopsis thaliana ATACP5; protein serine/threonine phosphatase AT3G17790 (ATACP5) mRNA, complete cds Length = 2179 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1618 gcctctgtgtgcttctcgatgattccaa 1645
>ref|NM_112661.2| Arabidopsis thaliana unknown protein AT3G17800 mRNA, complete cds Length = 2331 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1360 gcctctgtgtgcttctcgatgattccaa 1333
>gb|AY099554.1| Arabidopsis thaliana unknown protein (At3g17800) mRNA, complete cds Length = 1529 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1235 gcctctgtgtgcttctcgatgattccaa 1208
>gb|AY093276.1| Arabidopsis thaliana unknown protein (At3g17800) mRNA, complete cds Length = 1326 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1082 gcctctgtgtgcttctcgatgattccaa 1055
>gb|AY062486.1| Arabidopsis thaliana Unknown protein (At3g17800; MEB5.2) mRNA, complete cds Length = 1509 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1235 gcctctgtgtgcttctcgatgattccaa 1208
>dbj|AK221063.1| Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL22-78-F07 Length = 531 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 222 gcctctgtgtgcttctcgatgattccaa 195
>gb|AF346660.1|AF346660 Brassica napus unknown mRNA Length = 863 Score = 48.1 bits (24), Expect = 0.028 Identities = 72/88 (81%) Strand = Plus / Minus Query: 408 tccttggaagaatccactgttccttccggggtgatcacaatctctggtttcccgaatagc 467 |||||||||||||| || || ||||| || || ||||||||||| || || || || | | Sbjct: 647 tccttggaagaatcaaccgtgccttcaggagtaatcacaatctcaggcttaccaaacaac 588 Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||| || |||||||| ||||| |||| Sbjct: 587 gcctccgtatgcttctcaatgatcccaa 560
>emb|BX823872.1|CNS0A7BB Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTLS88ZA02 of Adult vegetative tissue of strain col-0 of Arabidopsis thaliana (thale cress) Length = 1473 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1216 gcctctgtgtgcttctcgatgattccaa 1189
>gb|AY089008.1| Arabidopsis thaliana clone 15577 mRNA, complete sequence Length = 1543 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Minus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1234 gcctctgtgtgcttctcgatgattccaa 1207
>dbj|AB019230.1| Arabidopsis thaliana genomic DNA, chromosome 3, P1 clone: MEB5 Length = 74968 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 1986 gcctctgtgtgcttctcgatgattccaa 2013
>emb|AJ243527.1|ATH243527 Arabidopsis thaliana acp5 gene for acid phosphatase type 5 Length = 3882 Score = 48.1 bits (24), Expect = 0.028 Identities = 27/28 (96%) Strand = Plus / Plus Query: 468 gcctctgtgtgcttctcgatgatgccaa 495 ||||||||||||||||||||||| |||| Sbjct: 3589 gcctctgtgtgcttctcgatgattccaa 3616
>gb|AC101982.9| Mus musculus chromosome 3, clone RP24-346F13, complete sequence Length = 162227 Score = 44.1 bits (22), Expect = 0.44 Identities = 22/22 (100%) Strand = Plus / Plus Query: 215 cttcagtgaagcccatgaactt 236 |||||||||||||||||||||| Sbjct: 52482 cttcagtgaagcccatgaactt 52503
>ref|XM_661812.1| Cryptosporidium hominis TU502 chain S, Cryo-Em structure of the heavy meromyosin (Chro.20299) partial mRNA Length = 2628 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 25 gactcctcaaattcaattttgtgagg 50 |||||||||||||||||||| ||||| Sbjct: 683 gactcctcaaattcaattttttgagg 658
>ref|XM_626482.1| Cryptosporidium parvum Iowa II pleckstrin homology (PH) domain containing protein with N-terminal ankyrin repeats (cgd2_2840), partial mRNA Length = 3333 Score = 44.1 bits (22), Expect = 0.44 Identities = 25/26 (96%) Strand = Plus / Minus Query: 25 gactcctcaaattcaattttgtgagg 50 |||||||||||||||||||| ||||| Sbjct: 1388 gactcctcaaattcaattttttgagg 1363
>gb|AE006144.1| Pasteurella multocida subsp. multocida str. Pm70 section 111 of 204 of the complete genome Length = 11505 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Plus Query: 396 ctgacatactcatccttggaagaat 420 |||||||||||| |||||||||||| Sbjct: 1273 ctgacatactcagccttggaagaat 1297
>gb|AC146856.8| Medicago truncatula clone mth2-16l23, complete sequence Length = 145382 Score = 42.1 bits (21), Expect = 1.7 Identities = 21/21 (100%) Strand = Plus / Minus Query: 28 tcctcaaattcaattttgtga 48 ||||||||||||||||||||| Sbjct: 109098 tcctcaaattcaattttgtga 109078
>gb|AY108199.1| Zea mays PCO076094 mRNA sequence Length = 861 Score = 42.1 bits (21), Expect = 1.7 Identities = 27/29 (93%) Strand = Plus / Minus Query: 323 ctcgacatcccagaggaaggatccgaatg 351 |||||| |||||||||||||| ||||||| Sbjct: 587 ctcgacgtcccagaggaaggaaccgaatg 559
>gb|AC109268.10| Mus musculus chromosome 1, clone RP23-305F24, complete sequence Length = 160975 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aatctaccctatctggatcc 281 |||||||||||||||||||| Sbjct: 124198 aatctaccctatctggatcc 124217
>gb|AC165245.2| Mus musculus BAC clone RP24-376N22 from chromosome 9, complete sequence Length = 217074 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 atccttggaagaatccactg 426 |||||||||||||||||||| Sbjct: 142794 atccttggaagaatccactg 142775
>gb|AC150389.2| Branchiostoma floridae clone CH302-114C5, complete sequence Length = 192476 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 aaatggtacctggagtccac 316 |||||||||||||||||||| Sbjct: 85080 aaatggtacctggagtccac 85099
>gb|CP000061.1| Aster yellows witches'-broom phytoplasma AYWB, complete genome Length = 706569 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 294 acaaaatggtacctggagtc 313 |||||||||||||||||||| Sbjct: 276986 acaaaatggtacctggagtc 276967
>gb|AC121889.3| Mus musculus BAC clone RP24-146D9 from chromosome 1, complete sequence Length = 160207 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 262 aatctaccctatctggatcc 281 |||||||||||||||||||| Sbjct: 28154 aatctaccctatctggatcc 28173
>emb|AL451141.13| Human DNA sequence from clone RP11-265E5 on chromosome 6, complete sequence Length = 63966 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cctctaagatcagccttctc 377 |||||||||||||||||||| Sbjct: 18251 cctctaagatcagccttctc 18232
>emb|AL356454.15| Human DNA sequence from clone RP11-458J24 on chromosome 6, complete sequence Length = 174333 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 404 ctcatccttggaagaatcca 423 |||||||||||||||||||| Sbjct: 148876 ctcatccttggaagaatcca 148857
>gb|AC137843.15| Mus musculus chromosome 9, clone RP23-413J12, complete sequence Length = 197907 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 354 acagcctctaagatcagccttctc 377 ||||||||||||| |||||||||| Sbjct: 190730 acagcctctaagaccagccttctc 190753
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 323 ctcgacatcccagaggaagg 342 |||||||||||||||||||| Sbjct: 1108664 ctcgacatcccagaggaagg 1108683
>gb|AC068765.16| Homo sapiens 3 BAC RP11-115H18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 151482 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 ggagaacaaagtcatacaag 68 |||||||||||||||||||| Sbjct: 127391 ggagaacaaagtcatacaag 127372
>gb|AC055732.16| Homo sapiens 3 BAC RP11-39E4 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 176459 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 358 cctctaagatcagccttctc 377 |||||||||||||||||||| Sbjct: 25377 cctctaagatcagccttctc 25358
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 tatcctgacatactcatccttgga 415 ||||||||||||||| |||||||| Sbjct: 15576734 tatcctgacatactcttccttgga 15576757
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctcctcaaattcaattttgt 46 |||||||||||||||||||| Sbjct: 14411084 ctcctcaaattcaattttgt 14411065 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctcctcaaattcaattttgt 46 |||||||||||||||||||| Sbjct: 14410133 ctcctcaaattcaattttgt 14410114
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctcctcaaattcaattttgt 46 |||||||||||||||||||| Sbjct: 72481 ctcctcaaattcaattttgt 72462 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 27 ctcctcaaattcaattttgt 46 |||||||||||||||||||| Sbjct: 71530 ctcctcaaattcaattttgt 71511
>dbj|AP004645.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OJ1119_B10 Length = 148508 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 tatcctgacatactcatccttgga 415 ||||||||||||||| |||||||| Sbjct: 124492 tatcctgacatactcttccttgga 124515
>dbj|AP004459.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC clone:P0410E11 Length = 150200 Score = 40.1 bits (20), Expect = 6.9 Identities = 23/24 (95%) Strand = Plus / Plus Query: 392 tatcctgacatactcatccttgga 415 ||||||||||||||| |||||||| Sbjct: 10889 tatcctgacatactcttccttgga 10912
>emb|AL358832.3|CNS05TED Human chromosome 14 DNA sequence BAC R-767H2 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 177945 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Plus Query: 291 gtgacaaaatggtacctgga 310 |||||||||||||||||||| Sbjct: 102834 gtgacaaaatggtacctgga 102853
>emb|CT009732.8| Mouse DNA sequence from clone RP23-72O20 on chromosome 9, complete sequence Length = 239257 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 407 atccttggaagaatccactg 426 |||||||||||||||||||| Sbjct: 62822 atccttggaagaatccactg 62803
>emb|AL928909.7| Mouse DNA sequence from clone RP23-320I18 on chromosome 2, complete sequence Length = 187340 Score = 40.1 bits (20), Expect = 6.9 Identities = 20/20 (100%) Strand = Plus / Minus Query: 173 atactctccagggcatgcag 192 |||||||||||||||||||| Sbjct: 35704 atactctccagggcatgcag 35685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 4,082,968 Number of Sequences: 3902068 Number of extensions: 4082968 Number of successful extensions: 105505 Number of sequences better than 10.0: 48 Number of HSP's better than 10.0 without gapping: 48 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 105321 Number of HSP's gapped (non-prelim): 184 length of query: 507 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 485 effective length of database: 17,147,199,772 effective search space: 8316391889420 effective search space used: 8316391889420 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)