ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61m05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 pr... 34 0.40
2HORN_MOUSE (Q8VHD8) Hornerin 33 0.68
3LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology ... 32 1.2
4HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split pr... 32 1.5
5ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat pro... 32 1.5
6ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat pro... 32 2.0
7ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat pro... 32 2.0
8LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology ... 32 2.0
9ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat pro... 32 2.0
10CJ095_HUMAN (Q9H7T3) Protein C10orf95 32 2.0
11ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat pro... 32 2.0
12ENV_FSVST (P03392) Env polyprotein precursor [Contains: Coat pro... 31 2.6
13ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat pro... 31 2.6
14ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat pro... 31 3.4
15ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat pro... 31 3.4
16RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembra... 31 3.4
17NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 pr... 30 4.4
18HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split pr... 30 4.4
19UL70_HCMVA (P17149) Probable primase (DNA replication protein UL70) 30 5.8
20IF2_RHIME (Q92SW4) Translation initiation factor IF-2 30 5.8
21BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein sh... 30 5.8
22NRL_HUMAN (P54845) Neural retina-specific leucine zipper protein... 30 7.6
23MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precu... 30 7.6
24POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p... 30 7.6
25VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein ... 29 9.9
26ABGA_ECOLI (P77357) Aminobenzoyl-glutamate utilization protein A 29 9.9
27ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disint... 29 9.9

>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (hN2) [Contains: Notch 2 extracellular truncation; Notch
            2 intracellular domain]
          Length = 2471

 Score = 33.9 bits (76), Expect = 0.40
 Identities = 24/81 (29%), Positives = 34/81 (41%)
 Frame = +2

Query: 296  AAGPVTPARCCCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVP 475
            A+GP    RC C         ++C + C+S P   G S H   +PP  +   + P     
Sbjct: 1361 ASGP----RCFCP------SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSR 1410

Query: 476  PTLRLANPSAQAATCCCRCCS 538
              L  A PS   ATC  + C+
Sbjct: 1411 CELYTAPPSTPPATCLSQYCA 1431



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>HORN_MOUSE (Q8VHD8) Hornerin|
          Length = 2496

 Score = 33.1 bits (74), Expect = 0.68
 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%)
 Frame = -2

Query: 545  FHVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAA------AV 384
            F   +SG N  Q G      S      G  G     S   G HN  +SQ ++      + 
Sbjct: 1350 FSGQTSGRNQHQSGSRHGSGSGQFPISGQQGSHHGHSSSSGTHNSGSSQSSSTQWSHGSG 1409

Query: 383  TNKKPNSSCFGATTFQVGNNTLQGS 309
            + +      +G+T+ Q  ++T QGS
Sbjct: 1410 SEQSSGLGHYGSTSGQTASSTRQGS 1434



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>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology|
           domain-containing protein 4 (Leucine-rich neuronal
           protein)
          Length = 683

 Score = 32.3 bits (72), Expect = 1.2
 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
 Frame = -1

Query: 597 GTARSTRRPLRPPHHEPIPCEQQRQQHV--AAWADGFASLNVGGTRWCGREAQE 442
           G+A     P RPP   P P E     H        GF S++ G  RW G E+ +
Sbjct: 266 GSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTD 319



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>HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1017

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/36 (41%), Positives = 22/36 (61%)
 Frame = +2

Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391
           +NG++A P  P  CCC +G+   RS + W +C  RP
Sbjct: 286 KNGSSAKPSCP-YCCCAVGS-KDRSLSVWLTCLKRP 319



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>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E; R protein]
          Length = 662

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +R+K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 327 NRTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 370



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>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 436

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 277 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 320



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>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 645

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 310 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 353



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>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology|
           domain-containing protein 4
          Length = 680

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
 Frame = -1

Query: 597 GTARSTRRPLRPPHHEPIPCEQ--QRQQHVAAWADGFASLNVGGTRWCGREAQE 442
           G A     P RPP   P P E     +++      GF S++ G  RW G E+ +
Sbjct: 266 GAALGDLVPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTD 319



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>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 642

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 307 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 350



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>CJ095_HUMAN (Q9H7T3) Protein C10orf95|
          Length = 257

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%)
 Frame = +2

Query: 299 AGPVTPAR---CCCR-------LGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 448
           AGP  P     C CR        G    R+  C  SC+     A  +    +R     SC
Sbjct: 132 AGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSC 191

Query: 449 ASRPHHRVPPTLRLANPSAQAATCCCR 529
            +R      PT   A+PSA A++CC R
Sbjct: 192 GARTAPTPAPT--CASPSAAASSCCRR 216



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>ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 639

 Score = 31.6 bits (70), Expect = 2.0
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 304 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSTPQHKL 347



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>ENV_FSVST (P03392) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 534

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370



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>ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 662

 Score = 31.2 bits (69), Expect = 2.6
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370



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>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E]
          Length = 668

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSVPQHKL 370



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>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;|
           Spike protein p15E] (Fragment)
          Length = 410

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +2

Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472
           +++K+CW    SRPP         +Y ++  P  SC S P H++
Sbjct: 267 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 310



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>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)|
          Length = 474

 Score = 30.8 bits (68), Expect = 3.4
 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 6/87 (6%)
 Frame = +2

Query: 275 PHVRNGAAAGPVTPARC-CCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC- 448
           P + N +  GP   + C  C LG          AS    PPL+ +S+     P  TA+C 
Sbjct: 142 PLLGNTSLEGPHDSSNCEACLLGFCAQNDLG-QASKPPAPPLSPTSSKSAREPKVTATCS 200

Query: 449 ---ASRPHHRVP-PTLRLANPSAQAAT 517
              +S+P  +V  P    ANP A   T
Sbjct: 201 NISSSQPSSKVQMPQASKANPQASNPT 227



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>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)|
            (Motch B) [Contains: Notch 2 extracellular truncation;
            Notch 2 intracellular domain]
          Length = 2470

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 7/80 (8%)
 Frame = +2

Query: 320  RCCCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVPPT------ 481
            RC C         K+C + C+S P   G  T Y  R PP  SC      R PP+      
Sbjct: 1363 RCFCL------NPKDCESGCASNPCQHG-GTCYPQRQPPHYSC------RCPPSFGGSHC 1409

Query: 482  -LRLANPSAQAATCCCRCCS 538
             L  A  S   ATC  + C+
Sbjct: 1410 ELYTAPTSTPPATCQSQYCA 1429



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>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)|
          Length = 1015

 Score = 30.4 bits (67), Expect = 4.4
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391
           +NG++  P  P  CCC +G+   RS + W +C  RP
Sbjct: 286 KNGSSTKPSCPY-CCCAVGSK-DRSLSVWLTCLKRP 319



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>UL70_HCMVA (P17149) Probable primase (DNA replication protein UL70)|
          Length = 946

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%)
 Frame = +3

Query: 312 PLQGVVADLERCCTEARTV-----GLLVRHG-RRWLARRPIMFTVLLRQPLALPGRTIAC 473
           PL+  ++ L R C   RT      G L R+  RR+L   P +   LL +PL +       
Sbjct: 383 PLERSLSGLLRLCASLRTAQTYTTGTLTRYSQRRYLLPEPAL-APLLERPLPV------- 434

Query: 474 HRR*GWRIHLPKLRHVVAA 530
                +R+HLP  +HV  A
Sbjct: 435 -----YRVHLPNDQHVFCA 448



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>IF2_RHIME (Q92SW4) Translation initiation factor IF-2|
          Length = 889

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
 Frame = -2

Query: 494 SPASTSVARDGAA--GKRKRLSEEDGEHNGSTSQPAAAVTNKKP 369
           +PA+T  A DGAA  G+R   SEED         P   V   +P
Sbjct: 203 APAATPAAPDGAALRGRRGTESEEDERRRSGAGAPRGKVVRPEP 246



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>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)|
          Length = 1206

 Score = 30.0 bits (66), Expect = 5.8
 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%)
 Frame = -2

Query: 542 HVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAAAVTNKKP-N 366
           H +   +N  Q  Q  +  S   A    AG         G  +GS+S  AA  TN+KP  
Sbjct: 313 HHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSASAGGGGGGGSGSSSGTAAGGTNRKPKT 372

Query: 365 SSCFGATTFQVGNNTLQGS 309
           +S F  T+  VG+  L  +
Sbjct: 373 TSSFEITSVTVGHPKLNAA 391



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>NRL_HUMAN (P54845) Neural retina-specific leucine zipper protein (NRL)|
           (D14S46E)
          Length = 237

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = +2

Query: 431 PPTASCASRPHHRVPPTLRLANPSAQAAT 517
           PPTAS  S P+  VPP+   + P    AT
Sbjct: 34  PPTASLGSTPYSSVPPSPTFSEPGMVGAT 62



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>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC|
           3.4.21.104) (Mannose-binding protein-associated serine
           protease 2) (MASP-2) (MBL-associated serine protease 2)
           [Contains: Mannan-binding lectin serine protease 2 A
           chain; Mannan-bin
          Length = 685

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
 Frame = +2

Query: 323 CCCRLGTLLHRSKNCWASCSSRPPLAG-----SSTHYVHRPPPTASCA 451
           C CR+G +LH++K+  ++  S     G     SS  Y    P  +SCA
Sbjct: 165 CSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCA 212



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>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid|
            protein C) (p21); Core protein p19; Envelope glycoprotein
            E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68)
            (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine
            protease/N
          Length = 3032

 Score = 29.6 bits (65), Expect = 7.6
 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%)
 Frame = +2

Query: 272  DPHVRNGAAAGPVTPARCCC-RLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 448
            +P     +   P  P+ C   R G    R+   WA     PPL  S     ++PP  A C
Sbjct: 2256 EPMAEEESDLEPSIPSECMLPRSG--FPRALPAWARPDYNPPLVESWRRPDYQPPTVAGC 2313

Query: 449  ASRPHHRVP 475
            A  P  + P
Sbjct: 2314 ALPPPKKAP 2322



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>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13|
           protein) (DOA4-independent degradation protein 6)
          Length = 437

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%)
 Frame = -2

Query: 473 ARDGAAGKRKRLSEEDGEHNGSTSQP------AAAVTNKKPN 366
           A  G+ G  K++S+E+GE NG           ++A+ ++KPN
Sbjct: 88  AGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPN 129



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>ABGA_ECOLI (P77357) Aminobenzoyl-glutamate utilization protein A|
          Length = 436

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 537 EQQRQQHVAAWADGFASLNVGGTRWCGREAQEAVGGG 427
           E+Q   H   + DGFAS N G    CG +   A+G G
Sbjct: 124 EEQDVSH-RPYRDGFASCNAGMMHACGHDGHTAIGLG 159



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>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and|
            metalloproteinase with thrombospondin motifs 20) (ADAM-TS
            20) (ADAM-TS20)
          Length = 1906

 Score = 29.3 bits (64), Expect = 9.9
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +1

Query: 202  HLAVYNSD*WSRSSIVCIHRQFIRSPC*KWSSGWPSDPC 318
            H+A +    WS+ S+ C      R    +  +GWPSD C
Sbjct: 1650 HVATWKVGKWSKCSVTCGIGIMERRVACRTENGWPSDLC 1688


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 94,345,778
Number of Sequences: 219361
Number of extensions: 2015643
Number of successful extensions: 6734
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 6227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6692
length of database: 80,573,946
effective HSP length: 107
effective length of database: 57,102,319
effective search space used: 5710231900
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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