ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61m05 |
|---|---|
| Clone Library Name | barley_pub |
>NOTC2_HUMAN (Q04721) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (hN2) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2471 Score = 33.9 bits (76), Expect = 0.40 Identities = 24/81 (29%), Positives = 34/81 (41%) Frame = +2 Query: 296 AAGPVTPARCCCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVP 475 A+GP RC C ++C + C+S P G S H +PP + + P Sbjct: 1361 ASGP----RCFCP------SPRDCESGCASSPCQHGGSCHPQRQPPYYSCQCAPPFSGSR 1410 Query: 476 PTLRLANPSAQAATCCCRCCS 538 L A PS ATC + C+ Sbjct: 1411 CELYTAPPSTPPATCLSQYCA 1431
>HORN_MOUSE (Q8VHD8) Hornerin| Length = 2496 Score = 33.1 bits (74), Expect = 0.68 Identities = 22/85 (25%), Positives = 34/85 (40%), Gaps = 6/85 (7%) Frame = -2 Query: 545 FHVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAA------AV 384 F +SG N Q G S G G S G HN +SQ ++ + Sbjct: 1350 FSGQTSGRNQHQSGSRHGSGSGQFPISGQQGSHHGHSSSSGTHNSGSSQSSSTQWSHGSG 1409 Query: 383 TNKKPNSSCFGATTFQVGNNTLQGS 309 + + +G+T+ Q ++T QGS Sbjct: 1410 SEQSSGLGHYGSTSGQTASSTRQGS 1434
>LRCH4_HUMAN (O75427) Leucine-rich repeats and calponin homology| domain-containing protein 4 (Leucine-rich neuronal protein) Length = 683 Score = 32.3 bits (72), Expect = 1.2 Identities = 18/54 (33%), Positives = 23/54 (42%), Gaps = 2/54 (3%) Frame = -1 Query: 597 GTARSTRRPLRPPHHEPIPCEQQRQQHV--AAWADGFASLNVGGTRWCGREAQE 442 G+A P RPP P P E H GF S++ G RW G E+ + Sbjct: 266 GSALGDLAPSRPPSFSPCPAEDLFPGHRYDGGLDSGFHSVDSGSKRWSGNESTD 319
>HIRA_HUMAN (P54198) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1017 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/36 (41%), Positives = 22/36 (61%) Frame = +2 Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391 +NG++A P P CCC +G+ RS + W +C RP Sbjct: 286 KNGSSAKPSCP-YCCCAVGS-KDRSLSVWLTCLKRP 319
>ENV_FSVGA (P03391) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E; R protein] Length = 662 Score = 32.0 bits (71), Expect = 1.5 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +R+K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NRTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 370
>ENV_FLVCS (Q02077) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 436 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 277 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 320
>ENV_FSVSM (P21445) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 645 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 310 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 353
>LRCH4_MOUSE (Q921G6) Leucine-rich repeats and calponin homology| domain-containing protein 4 Length = 680 Score = 31.6 bits (70), Expect = 2.0 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%) Frame = -1 Query: 597 GTARSTRRPLRPPHHEPIPCEQ--QRQQHVAAWADGFASLNVGGTRWCGREAQE 442 G A P RPP P P E +++ GF S++ G RW G E+ + Sbjct: 266 GAALGDLVPSRPPSFSPCPAEDLFPGRRYDGGLDSGFHSVDSGSKRWSGNESTD 319
>ENV_FLVGL (P08359) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 642 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 307 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSTPQHKL 350
>CJ095_HUMAN (Q9H7T3) Protein C10orf95| Length = 257 Score = 31.6 bits (70), Expect = 2.0 Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 10/87 (11%) Frame = +2 Query: 299 AGPVTPAR---CCCR-------LGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 448 AGP P C CR G R+ C SC+ A + +R SC Sbjct: 132 AGPAPPPASRDCRCRRPRRWPRAGRRGRRAGACKPSCAGAAWSARGAPLCSYRTSCAGSC 191 Query: 449 ASRPHHRVPPTLRLANPSAQAATCCCR 529 +R PT A+PSA A++CC R Sbjct: 192 GARTAPTPAPT--CASPSAAASSCCRR 216
>ENV_FLVSA (P06752) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 639 Score = 31.6 bits (70), Expect = 2.0 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 304 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSTPQHKL 347
>ENV_FSVST (P03392) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 534 Score = 31.2 bits (69), Expect = 2.6 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370
>ENV_FLVLB (P11261) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 662 Score = 31.2 bits (69), Expect = 2.6 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSDPQHKL 370
>ENV_FLVC6 (P21443) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] Length = 668 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 327 NKTKDCWLCLVSRPPYYEGIAVLGNYSNQTNPPPSCLSVPQHKL 370
>ENV_FLVCA (Q02076) Env polyprotein precursor [Contains: Coat protein GP70;| Spike protein p15E] (Fragment) Length = 410 Score = 30.8 bits (68), Expect = 3.4 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%) Frame = +2 Query: 350 HRSKNCWASCSSRPPLAGSST---HYVHRPPPTASCASRPHHRV 472 +++K+CW SRPP +Y ++ P SC S P H++ Sbjct: 267 NKTKDCWLCLVSRPPYYEGIAILGNYSNQTNPPPSCLSIPQHKL 310
>RTP3_MOUSE (Q5QGU6) Receptor-transporting protein 3 (Transmembrane protein 7)| Length = 474 Score = 30.8 bits (68), Expect = 3.4 Identities = 27/87 (31%), Positives = 37/87 (42%), Gaps = 6/87 (6%) Frame = +2 Query: 275 PHVRNGAAAGPVTPARC-CCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC- 448 P + N + GP + C C LG AS PPL+ +S+ P TA+C Sbjct: 142 PLLGNTSLEGPHDSSNCEACLLGFCAQNDLG-QASKPPAPPLSPTSSKSAREPKVTATCS 200 Query: 449 ---ASRPHHRVP-PTLRLANPSAQAAT 517 +S+P +V P ANP A T Sbjct: 201 NISSSQPSSKVQMPQASKANPQASNPT 227
>NOTC2_MOUSE (O35516) Neurogenic locus notch homolog protein 2 precursor (Notch 2)| (Motch B) [Contains: Notch 2 extracellular truncation; Notch 2 intracellular domain] Length = 2470 Score = 30.4 bits (67), Expect = 4.4 Identities = 26/80 (32%), Positives = 32/80 (40%), Gaps = 7/80 (8%) Frame = +2 Query: 320 RCCCRLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASCASRPHHRVPPT------ 481 RC C K+C + C+S P G T Y R PP SC R PP+ Sbjct: 1363 RCFCL------NPKDCESGCASNPCQHG-GTCYPQRQPPHYSC------RCPPSFGGSHC 1409 Query: 482 -LRLANPSAQAATCCCRCCS 538 L A S ATC + C+ Sbjct: 1410 ELYTAPTSTPPATCQSQYCA 1429
>HIRA_MOUSE (Q61666) HIRA protein (TUP1-like enhancer of split protein 1)| Length = 1015 Score = 30.4 bits (67), Expect = 4.4 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 284 RNGAAAGPVTPARCCCRLGTLLHRSKNCWASCSSRP 391 +NG++ P P CCC +G+ RS + W +C RP Sbjct: 286 KNGSSTKPSCPY-CCCAVGSK-DRSLSVWLTCLKRP 319
>UL70_HCMVA (P17149) Probable primase (DNA replication protein UL70)| Length = 946 Score = 30.0 bits (66), Expect = 5.8 Identities = 25/79 (31%), Positives = 36/79 (45%), Gaps = 6/79 (7%) Frame = +3 Query: 312 PLQGVVADLERCCTEARTV-----GLLVRHG-RRWLARRPIMFTVLLRQPLALPGRTIAC 473 PL+ ++ L R C RT G L R+ RR+L P + LL +PL + Sbjct: 383 PLERSLSGLLRLCASLRTAQTYTTGTLTRYSQRRYLLPEPAL-APLLERPLPV------- 434 Query: 474 HRR*GWRIHLPKLRHVVAA 530 +R+HLP +HV A Sbjct: 435 -----YRVHLPNDQHVFCA 448
>IF2_RHIME (Q92SW4) Translation initiation factor IF-2| Length = 889 Score = 30.0 bits (66), Expect = 5.8 Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 2/44 (4%) Frame = -2 Query: 494 SPASTSVARDGAA--GKRKRLSEEDGEHNGSTSQPAAAVTNKKP 369 +PA+T A DGAA G+R SEED P V +P Sbjct: 203 APAATPAAPDGAALRGRRGTESEEDERRRSGAGAPRGKVVRPEP 246
>BUN2_DROME (Q24523) Protein bunched, class 2 isoform (Protein shortsighted)| Length = 1206 Score = 30.0 bits (66), Expect = 5.8 Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 1/79 (1%) Frame = -2 Query: 542 HVNSSGNNMSQLGQMDSPASTSVARDGAAGKRKRLSEEDGEHNGSTSQPAAAVTNKKP-N 366 H + +N Q Q + S A AG G +GS+S AA TN+KP Sbjct: 313 HHHHQHHNHQQQQQQQTSLSQGHASLTVAGGSASAGGGGGGGSGSSSGTAAGGTNRKPKT 372 Query: 365 SSCFGATTFQVGNNTLQGS 309 +S F T+ VG+ L + Sbjct: 373 TSSFEITSVTVGHPKLNAA 391
>NRL_HUMAN (P54845) Neural retina-specific leucine zipper protein (NRL)| (D14S46E) Length = 237 Score = 29.6 bits (65), Expect = 7.6 Identities = 13/29 (44%), Positives = 16/29 (55%) Frame = +2 Query: 431 PPTASCASRPHHRVPPTLRLANPSAQAAT 517 PPTAS S P+ VPP+ + P AT Sbjct: 34 PPTASLGSTPYSSVPPSPTFSEPGMVGAT 62
>MASP2_RAT (Q9JJS8) Mannan-binding lectin serine protease 2 precursor (EC| 3.4.21.104) (Mannose-binding protein-associated serine protease 2) (MASP-2) (MBL-associated serine protease 2) [Contains: Mannan-binding lectin serine protease 2 A chain; Mannan-bin Length = 685 Score = 29.6 bits (65), Expect = 7.6 Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 5/48 (10%) Frame = +2 Query: 323 CCCRLGTLLHRSKNCWASCSSRPPLAG-----SSTHYVHRPPPTASCA 451 C CR+G +LH++K+ ++ S G SS Y P +SCA Sbjct: 165 CSCRVGYILHQNKHTCSALCSGQVFTGRSGFLSSPEYPQPYPKLSSCA 212
>POLG_HCVJF (Q99IB8) Genome polyprotein [Contains: Core protein p21 (Capsid| protein C) (p21); Core protein p19; Envelope glycoprotein E1 (gp32) (gp35); Envelope glycoprotein E2 (NS1) (gp68) (gp70); p7; Protease NS2-3 (EC 3.4.22.-) (p23); Serine protease/N Length = 3032 Score = 29.6 bits (65), Expect = 7.6 Identities = 20/69 (28%), Positives = 27/69 (39%), Gaps = 1/69 (1%) Frame = +2 Query: 272 DPHVRNGAAAGPVTPARCCC-RLGTLLHRSKNCWASCSSRPPLAGSSTHYVHRPPPTASC 448 +P + P P+ C R G R+ WA PPL S ++PP A C Sbjct: 2256 EPMAEEESDLEPSIPSECMLPRSG--FPRALPAWARPDYNPPLVESWRRPDYQPPTVAGC 2313 Query: 449 ASRPHHRVP 475 A P + P Sbjct: 2314 ALPPPKKAP 2322
>VPS4_YEAST (P52917) Vacuolar protein sorting-associated protein VPS4 (END13| protein) (DOA4-independent degradation protein 6) Length = 437 Score = 29.3 bits (64), Expect = 9.9 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 6/42 (14%) Frame = -2 Query: 473 ARDGAAGKRKRLSEEDGEHNGSTSQP------AAAVTNKKPN 366 A G+ G K++S+E+GE NG ++A+ ++KPN Sbjct: 88 AGSGSNGGNKKISQEEGEDNGGEDNKKLRGALSSAILSEKPN 129
>ABGA_ECOLI (P77357) Aminobenzoyl-glutamate utilization protein A| Length = 436 Score = 29.3 bits (64), Expect = 9.9 Identities = 15/37 (40%), Positives = 19/37 (51%) Frame = -1 Query: 537 EQQRQQHVAAWADGFASLNVGGTRWCGREAQEAVGGG 427 E+Q H + DGFAS N G CG + A+G G Sbjct: 124 EEQDVSH-RPYRDGFASCNAGMMHACGHDGHTAIGLG 159
>ATS20_MOUSE (P59511) ADAMTS-20 precursor (EC 3.4.24.-) (A disintegrin and| metalloproteinase with thrombospondin motifs 20) (ADAM-TS 20) (ADAM-TS20) Length = 1906 Score = 29.3 bits (64), Expect = 9.9 Identities = 13/39 (33%), Positives = 19/39 (48%) Frame = +1 Query: 202 HLAVYNSD*WSRSSIVCIHRQFIRSPC*KWSSGWPSDPC 318 H+A + WS+ S+ C R + +GWPSD C Sbjct: 1650 HVATWKVGKWSKCSVTCGIGIMERRVACRTENGWPSDLC 1688 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 94,345,778 Number of Sequences: 219361 Number of extensions: 2015643 Number of successful extensions: 6734 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 6227 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 6692 length of database: 80,573,946 effective HSP length: 107 effective length of database: 57,102,319 effective search space used: 5710231900 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
