Clone Name | rbah61m05 |
---|---|
Clone Library Name | barley_pub |
>gb|AF537267.1| Synthetic construct insect toxin CryIA(c) gene, complete cds Length = 1848 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 517 atgttgttgccgctgctgttca 538 |||||||||||||||||||||| Sbjct: 1523 atgttgttgccgctgctgttca 1502
>emb|CR954256.1| Anopheles gambiae Pen-1 region; BAC clones 30N20, 10K02, 13E09, 31J16 and 01G10 from library NotreDame1 of Anopheles gambiae (African malaria mosquito) strain PEST Length = 447895 Score = 44.1 bits (22), Expect = 0.54 Identities = 22/22 (100%) Strand = Plus / Minus Query: 137 caataatttgtctaatttggac 158 |||||||||||||||||||||| Sbjct: 444752 caataatttgtctaatttggac 444731
>gb|AY667343.1| Ciona intestinalis isolate east coast 5 forkhead gene, partial cds Length = 4478 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 125 tatatttttgaccaataattt 145 ||||||||||||||||||||| Sbjct: 1252 tatatttttgaccaataattt 1232
>gb|AC135288.1| Solanum demissum chromosome 5 BAC PGEC219 genomic sequence, complete sequence Length = 124895 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Plus Query: 117 tttccctatatatttttgaccaataattt 145 |||||||||||||||| |||| ||||||| Sbjct: 66920 tttccctatatattttggacctataattt 66948
>ref|XM_708442.1| Candida albicans SC5314 hypothetical protein (CaO19.11350), mRNA Length = 1755 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 cccaataatttgtttttcaag 197 ||||||||||||||||||||| Sbjct: 829 cccaataatttgtttttcaag 849
>ref|XM_708401.1| Candida albicans SC5314 hypothetical protein (CaO19.3869), mRNA Length = 1755 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 177 cccaataatttgtttttcaag 197 ||||||||||||||||||||| Sbjct: 829 cccaataatttgtttttcaag 849
>emb|AL591004.3| Human DNA sequence from clone RP11-497F24 on chromosome 6, complete sequence Length = 159845 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 212 tatataattcagactgatggagtag 236 ||||||||||| ||||||||||||| Sbjct: 23825 tatataattcatactgatggagtag 23849
>gb|AC157777.2| Medicago truncatula chromosome 7 BAC clone mth2-25c14, complete sequence Length = 106857 Score = 42.1 bits (21), Expect = 2.2 Identities = 27/29 (93%) Strand = Plus / Minus Query: 27 aaaatattgtgtacacactacaaaccaaa 55 |||||||||| |||| ||||||||||||| Sbjct: 86993 aaaatattgtatacaaactacaaaccaaa 86965
>gb|AY271661.1| Homo sapiens v-raf-1 murine leukemia viral oncogene homolog 1 (RAF1) gene, complete cds Length = 82374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 518 tgttgttgccgctgctgttca 538 ||||||||||||||||||||| Sbjct: 27367 tgttgttgccgctgctgttca 27387
>gb|AC026170.5| Homo sapiens chromosome 3 clone RP11-163D23 map 3p, complete sequence Length = 145212 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 518 tgttgttgccgctgctgttca 538 ||||||||||||||||||||| Sbjct: 62588 tgttgttgccgctgctgttca 62568
>gb|AC110909.10| Mus musculus chromosome 7, clone RP24-186G5, complete sequence Length = 161738 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 436 gacagcctcttgcgcttccc 455 |||||||||||||||||||| Sbjct: 89974 gacagcctcttgcgcttccc 89993
>gb|AC005592.1| Homo sapiens chromosome 5, BAC clone 79a6 (LBNL H172), complete sequence Length = 90693 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 ggaattggctcatgatgggg 561 |||||||||||||||||||| Sbjct: 8135 ggaattggctcatgatgggg 8154
>gb|AC135561.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0086N07 map S790A, complete sequence Length = 178523 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 69 tgatcgatggacctagctag 88 |||||||||||||||||||| Sbjct: 93740 tgatcgatggacctagctag 93759
>ref|XM_367648.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07559.4) partial mRNA Length = 1728 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 383 tcacggccgccgctggctgg 402 |||||||||||||||||||| Sbjct: 1649 tcacggccgccgctggctgg 1668
>ref|XM_322354.1| Neurospora crassa OR74A hypothetical protein (NCU00269.1) partial mRNA Length = 2865 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caagtcaccacttggccgta 213 |||||||||||||||||||| Sbjct: 2307 caagtcaccacttggccgta 2326
>ref|XM_952647.1| Neurospora crassa OR74A hypothetical protein (NCU00269.1) partial mRNA Length = 2865 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 194 caagtcaccacttggccgta 213 |||||||||||||||||||| Sbjct: 2307 caagtcaccacttggccgta 2326
>gb|AE009144.1| Agrobacterium tumefaciens str. C58 circular chromosome, section 170 of 256 of the complete sequence Length = 10570 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tggccgaagagggcggcgtg 581 |||||||||||||||||||| Sbjct: 5189 tggccgaagagggcggcgtg 5170
>emb|CT010162.2| Pan troglodytes chromosome X BAC RP43-009H04, complete sequence Length = 195301 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 caatccctttccctatatattttt 133 |||| ||||||||||||||||||| Sbjct: 149708 caattcctttccctatatattttt 149685
>gb|AC127337.4| Mus musculus BAC clone RP23-168F21 from 12, complete sequence Length = 209066 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 126 atatttttgaccaataattt 145 |||||||||||||||||||| Sbjct: 112779 atatttttgaccaataattt 112760
>emb|AL357514.19| Human DNA sequence from clone RP1-105O18 on chromosome 6 Contains a novel gene and a CpG island, complete sequence Length = 140630 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 132 ttgaccaataatttgtctaa 151 |||||||||||||||||||| Sbjct: 18133 ttgaccaataatttgtctaa 18114
>emb|AL009176.1|HS137D17 Human DNA sequence from clone RP1-137D17 on chromosome 6q27 Contains a novel gene (FLJ21008) and two CpG islands, complete sequence Length = 87903 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 178 ccaataatttgtttttcaag 197 |||||||||||||||||||| Sbjct: 84957 ccaataatttgtttttcaag 84976
>emb|CR378675.1| Photobacterium profundum SS9 chromosome 2; segment 1/7 Length = 349544 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 17 ataggagacaaaaatattgt 36 |||||||||||||||||||| Sbjct: 231941 ataggagacaaaaatattgt 231922
>emb|BX294154.1| Pirellula sp. strain 1 complete genome; segment 22/24 Length = 299050 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 560 ggtggccgaagagggcggcgtgttgatc 587 |||| ||||||||||||| ||||||||| Sbjct: 5098 ggtgcccgaagagggcggtgtgttgatc 5125
>gb|AC160021.3| Pan troglodytes BAC clone CH251-564M21 from chromosome unknown, complete sequence Length = 201789 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 ggaattggctcatgatgggg 561 |||||||||||||||||||| Sbjct: 5464 ggaattggctcatgatgggg 5483
>emb|AL766856.1|SAG766856 Streptococcus agalactiae NEM316 complete genome, segment 14 Length = 103485 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 27 aaaatattgtgtacacactacaaa 50 ||||||||||||||||||| |||| Sbjct: 41500 aaaatattgtgtacacacttcaaa 41523
>emb|AL604062.15| Mouse DNA sequence from clone RP23-104B6 on chromosome 11 Contains a novel gene, a ferritin light chain (Ftl) pseudogene and a CpG island, complete sequence Length = 216510 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 16 cataggagacaaaaatattg 35 |||||||||||||||||||| Sbjct: 4398 cataggagacaaaaatattg 4417
>gb|AC023711.5| Drosophila melanogaster X BAC RP98-6C4 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174157 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 atgttgttgccgctgctgtt 536 |||||||||||||||||||| Sbjct: 101777 atgttgttgccgctgctgtt 101758
>gb|AC011463.7| Homo sapiens chromosome 19 clone CTC-442E9, complete sequence Length = 101944 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 54 aatcaactagaagtatgatc 73 |||||||||||||||||||| Sbjct: 35760 aatcaactagaagtatgatc 35779
>gb|AC023685.4| Drosophila melanogaster 3L BAC RP98-20N12 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 167926 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 atgttgttgccgctgctgtt 536 |||||||||||||||||||| Sbjct: 131191 atgttgttgccgctgctgtt 131172
>gb|AF511750.1| Hepatitis C virus isolate XF24 partial sequence Length = 1020 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 316 tgcaaggtgttgttgccgac 335 |||||||||||||||||||| Sbjct: 914 tgcaaggtgttgttgccgac 895
>ref|NM_144220.1| Drosophila melanogaster CG12714-RB (CG12714), mRNA Length = 963 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 atgttgttgccgctgctgtt 536 |||||||||||||||||||| Sbjct: 1 atgttgttgccgctgctgtt 20
>gb|AC008533.9| Homo sapiens chromosome 5 clone CTC-483L24, complete sequence Length = 254730 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 ggaattggctcatgatgggg 561 |||||||||||||||||||| Sbjct: 242710 ggaattggctcatgatgggg 242729
>gb|AC078957.16| Homo sapiens Xp BAC RP11-339E16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 198088 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 110 caatccctttccctatatattttt 133 |||| ||||||||||||||||||| Sbjct: 34597 caattcctttccctatatattttt 34574
>gb|AE007869.1| Agrobacterium tumefaciens str. C58, complete genome Length = 2841581 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 562 tggccgaagagggcggcgtg 581 |||||||||||||||||||| Sbjct: 1880719 tggccgaagagggcggcgtg 1880700
>ref|XM_394771.2| PREDICTED: Apis mellifera insulin-like receptor precursor (InR), mRNA Length = 6126 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 517 atgttgttgccgctgctgtt 536 |||||||||||||||||||| Sbjct: 1 atgttgttgccgctgctgtt 20
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgatcgatggacctagctag 88 |||||||||||||||||||| Sbjct: 13090340 tgatcgatggacctagctag 13090321
>gb|AC092679.2| Homo sapiens BAC clone RP11-676D22 from 2, complete sequence Length = 90621 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Minus Query: 170 aataggccccaataatttgttttt 193 |||||||||||| ||||||||||| Sbjct: 17291 aataggccccaacaatttgttttt 17268
>gb|AC023115.6| Homo sapiens BAC clone RP11-269A16 from 2, complete sequence Length = 112289 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 16 cataggagacaaaaatattg 35 |||||||||||||||||||| Sbjct: 61424 cataggagacaaaaatattg 61405
>gb|AC171180.2| Pan troglodytes BAC clone CH251-283C10 from chromosome unknown, complete sequence Length = 166310 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 542 ggaattggctcatgatgggg 561 |||||||||||||||||||| Sbjct: 61690 ggaattggctcatgatgggg 61709
>emb|AL954695.14| Zebrafish DNA sequence from clone CH211-202N12 in linkage group 1, complete sequence Length = 207004 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 113 tccctttccctatatatttttgac 136 ||||||||||||| |||||||||| Sbjct: 136192 tccctttccctatttatttttgac 136215
>dbj|AK071260.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023086A05, full insert sequence Length = 843 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgatcgatggacctagctag 88 |||||||||||||||||||| Sbjct: 624 tgatcgatggacctagctag 605
>dbj|AK061288.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-212-H12, full insert sequence Length = 846 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgatcgatggacctagctag 88 |||||||||||||||||||| Sbjct: 623 tgatcgatggacctagctag 604
>gb|AE003491.4| Drosophila melanogaster chromosome X, section 43 of 74 of the complete sequence Length = 332030 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 517 atgttgttgccgctgctgtt 536 |||||||||||||||||||| Sbjct: 187876 atgttgttgccgctgctgtt 187857
>emb|BX005199.10| Zebrafish DNA sequence from clone DKEY-12I13 in linkage group 20, complete sequence Length = 119113 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 126 atatttttgaccaataattt 145 |||||||||||||||||||| Sbjct: 39435 atatttttgaccaataattt 39454
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 69 tgatcgatggacctagctag 88 |||||||||||||||||||| Sbjct: 13170519 tgatcgatggacctagctag 13170500
>gb|AF067496.1|AF067496 Leishmania donovani aminophospholipid translocase (APLT1) gene, complete cds Length = 6640 Score = 40.1 bits (20), Expect = 8.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 291 gagcagcggctggcccagtgacccctgc 318 |||||||||||||| ||||| ||||||| Sbjct: 6560 gagcagcggctggcgcagtggcccctgc 6587
>emb|CT010408.3| Pan troglodytes chromosome X BAC RP43-014H14, complete sequence Length = 172332 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 110 caatccctttccctatatattttt 133 |||| ||||||||||||||||||| Sbjct: 139154 caattcctttccctatatattttt 139177
>gb|DQ084248.1| Uncultured bacterium BAC-L1N9, complete sequence of BAC Length = 25361 Score = 40.1 bits (20), Expect = 8.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 510 ctgcgacatgttgttgccgc 529 |||||||||||||||||||| Sbjct: 22363 ctgcgacatgttgttgccgc 22344
>emb|AL611936.11| Mouse DNA sequence from clone RP23-40G2 on chromosome 4, complete sequence Length = 166167 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 528 gctgctgttcacatggaattggct 551 |||| ||||||||||||||||||| Sbjct: 64811 gctgatgttcacatggaattggct 64834
>emb|AL607109.21| Mouse DNA sequence from clone RP23-352D7 on chromosome 4, complete sequence Length = 187252 Score = 40.1 bits (20), Expect = 8.5 Identities = 23/24 (95%) Strand = Plus / Plus Query: 514 gacatgttgttgccgctgctgttc 537 ||||||||||||| |||||||||| Sbjct: 59263 gacatgttgttgctgctgctgttc 59286 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,137,235 Number of Sequences: 3902068 Number of extensions: 5137235 Number of successful extensions: 98557 Number of sequences better than 10.0: 50 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 98352 Number of HSP's gapped (non-prelim): 205 length of query: 624 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 601 effective length of database: 17,143,297,704 effective search space: 10303121920104 effective search space used: 10303121920104 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)