ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah62b04
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1FTSI_BUCAP (O85297) Peptidoglycan synthetase ftsI (EC 2.4.1.129)... 30 2.1
2RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC ... 29 6.0

>FTSI_BUCAP (O85297) Peptidoglycan synthetase ftsI (EC 2.4.1.129)|
           (Peptidoglycan glycosyltransferase 3)
           (Penicillin-binding protein 3) (PBP-3)
          Length = 568

 Score = 30.4 bits (67), Expect = 2.1
 Identities = 16/48 (33%), Positives = 27/48 (56%)
 Frame = -1

Query: 223 WQI*TLTKTVTAFLFVVVTEVKLVSLQVITDRRSCYGGTLFSTRICDV 80
           W+  TL   V  FLF+V+  ++++ LQ+I  ++  Y G   + RI  V
Sbjct: 17  WRFVTLCSIV--FLFLVILTLRIIFLQIINSKKLAYEGDRRTLRIQSV 62



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>RPOC_ANAMM (Q5PBG3) DNA-directed RNA polymerase beta' chain (EC 2.7.7.6) (RNAP|
            beta' subunit) (Transcriptase beta' chain) (RNA
            polymerase beta' subunit)
          Length = 1415

 Score = 28.9 bits (63), Expect = 6.0
 Identities = 15/39 (38%), Positives = 24/39 (61%)
 Frame = -1

Query: 196  VTAFLFVVVTEVKLVSLQVITDRRSCYGGTLFSTRICDV 80
            V+  + V+  EVKLV+  V+TD+   YG  +  +R C+V
Sbjct: 938  VSNLIAVLDAEVKLVNSNVVTDK---YGNQIVMSRSCEV 973


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 58,942,152
Number of Sequences: 219361
Number of extensions: 1089930
Number of successful extensions: 2110
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2074
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2110
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2677159704
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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