Clone Name | rbah61m04 |
---|---|
Clone Library Name | barley_pub |
>gb|AC109594.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0007P22, complete sequence Length = 148068 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Plus Query: 442 attcacctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgc 501 ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| | Sbjct: 73388 attcacctttgacatttttgacttggcctttactttgggggctttctcctcgagctcttc 73447 Query: 502 cgcacgtgcaagttccctttctctggcttccaggttcctttgaaggtaatactacaaaga 561 | |||||||||||||||| |||||||| || || ||||||| ||||||||||| |||| | Sbjct: 73448 ctcacgtgcaagttccctctctctggcctcaagattcctttcaaggtaatactgcaaaca 73507 Query: 562 taaagaataaaata 575 |||||| |||||| Sbjct: 73508 caaagaagaaaata 73521 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Plus Query: 228 tctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaag 287 ||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| ||||| Sbjct: 73191 tctcacttccacctcttcgcgtttttcagcgatttcgatttttgcttgctttgctggaat 73250 Query: 288 gcctgcactttttgtttcttccttgcaagtttctcggcctgtat 331 ||||||| || || ||||| || |||| |||||| |||||||| Sbjct: 73251 gcctgcatcttctgcttctttctggcaattttctctgcctgtat 73294
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 442 attcacctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgc 501 ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| | Sbjct: 22379428 attcacctttgacatttttgacttggcctttactttgggggctttctcctcgagctcttc 22379369 Query: 502 cgcacgtgcaagttccctttctctggcttccaggttcctttgaaggtaatactacaaaga 561 | |||||||||||||||| |||||||| || || ||||||| ||||||||||| |||| | Sbjct: 22379368 ctcacgtgcaagttccctctctctggcctcaagattcctttcaaggtaatactgcaaaca 22379309 Query: 562 taaagaataaaata 575 |||||| |||||| Sbjct: 22379308 caaagaagaaaata 22379295 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 228 tctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaag 287 ||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| ||||| Sbjct: 22379625 tctcacttccacctcttcgcgtttttcagcgatttcgatttttgcttgctttgctggaat 22379566 Query: 288 gcctgcactttttgtttcttccttgcaagtttctcggcctgtat 331 ||||||| || || ||||| || |||| |||||| |||||||| Sbjct: 22379565 gcctgcatcttctgcttctttctggcaattttctctgcctgtat 22379522
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 155 bits (78), Expect = 2e-34 Identities = 120/134 (89%) Strand = Plus / Minus Query: 442 attcacctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgc 501 ||||||||||||||||||||||||||| |||||||||||||| || |||||||||||| | Sbjct: 22689339 attcacctttgacatttttgacttggcctttactttgggggctttctcctcgagctcttc 22689280 Query: 502 cgcacgtgcaagttccctttctctggcttccaggttcctttgaaggtaatactacaaaga 561 | |||||||||||||||| |||||||| || || ||||||| ||||||||||| |||| | Sbjct: 22689279 ctcacgtgcaagttccctctctctggcctcaagattcctttcaaggtaatactgcaaaca 22689220 Query: 562 taaagaataaaata 575 |||||| |||||| Sbjct: 22689219 caaagaagaaaata 22689206 Score = 63.9 bits (32), Expect = 6e-07 Identities = 86/104 (82%) Strand = Plus / Minus Query: 228 tctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaag 287 ||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| ||||| Sbjct: 22689536 tctcacttccacctcttcgcgtttttcagcgatttcgatttttgcttgctttgctggaat 22689477 Query: 288 gcctgcactttttgtttcttccttgcaagtttctcggcctgtat 331 ||||||| || || ||||| || |||| |||||| |||||||| Sbjct: 22689476 gcctgcatcttctgcttctttctggcaattttctctgcctgtat 22689433
>dbj|AK120191.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013035E03, full insert sequence Length = 2445 Score = 131 bits (66), Expect = 3e-27 Identities = 96/106 (90%) Strand = Plus / Minus Query: 447 cctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgccgcac 506 |||||||||||||||||||||| |||||||||||||| || |||||||||||| || ||| Sbjct: 2082 cctttgacatttttgacttggcctttactttgggggctttctcctcgagctcttcctcac 2023 Query: 507 gtgcaagttccctttctctggcttccaggttcctttgaaggtaata 552 ||||||||||||| |||||||| || || ||||||| ||||||||| Sbjct: 2022 gtgcaagttccctctctctggcctcaagattcctttcaaggtaata 1977 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/100 (82%) Strand = Plus / Minus Query: 228 tctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaag 287 ||||| ||||||||||| | ||| |||| ||||| ||||| ||||||||||| ||||| Sbjct: 2179 tctcacttccacctcttcgcgtttttcagcgatttcgatttttgcttgctttgctggaat 2120 Query: 288 gcctgcactttttgtttcttccttgcaagtttctcggcct 327 ||||||| || || ||||| || |||| |||||| |||| Sbjct: 2119 gcctgcatcttctgcttctttctggcaattttctctgcct 2080
>dbj|AK059060.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-021-G01, full insert sequence Length = 678 Score = 131 bits (66), Expect = 3e-27 Identities = 96/106 (90%) Strand = Plus / Minus Query: 447 cctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgccgcac 506 |||||||||||||||||||||| |||||||||||||| || |||||||||||| || ||| Sbjct: 166 cctttgacatttttgacttggcctttactttgggggctttctcctcgagctcttcctcac 107 Query: 507 gtgcaagttccctttctctggcttccaggttcctttgaaggtaata 552 ||||||||||||| |||||||| || || ||||||| ||||||||| Sbjct: 106 gtgcaagttccctctctctggcctcaagattcctttcaaggtaata 61 Score = 48.1 bits (24), Expect = 0.036 Identities = 81/100 (81%) Strand = Plus / Minus Query: 228 tctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaag 287 ||||| ||||||||||| | ||| |||| | ||| ||||| ||||||||||| ||||| Sbjct: 263 tctcacttccacctcttcgcgtttttcagcggtttcgatttttgcttgctttgctggaat 204 Query: 288 gcctgcactttttgtttcttccttgcaagtttctcggcct 327 ||||||| || || ||||| || |||| |||||| |||| Sbjct: 203 gcctgcatcttctgcttctttctggcaattttctctgcct 164
>gb|AY615521.1| Zea mays ABCF-type protein (ABCF1) mRNA, complete cds Length = 2523 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 447 cctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgccgcac 506 |||| ||||| || ||||||||||||||||||||||| | |||||||||||| || | | Sbjct: 2128 ccttcgacatcttggacttggcttttactttgggggctctctcctcgagctcttcctcgc 2069 Query: 507 gtgcaagttccctttctctggcttccaggttcctttgaaggta 549 | |||||||||||||||| |||||| |||||||| | |||||| Sbjct: 2068 gggcaagttccctttctcgggcttcaaggttcctctcaaggta 2026 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 227 atctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaa 286 |||||||||||||| ||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 2226 atctcagttccaccgcttcgagttcttaagcgacttggatttctgcttgctctgctggaa 2167 Query: 287 ggcctgca 294 |||||||| Sbjct: 2166 ggcctgca 2159
>gb|AY106575.1| Zea mays PCO135043 mRNA sequence Length = 1611 Score = 93.7 bits (47), Expect = 7e-16 Identities = 89/103 (86%) Strand = Plus / Minus Query: 447 cctttgacatttttgacttggcttttactttgggggccttttcctcgagctctgccgcac 506 |||| ||||| || ||||||||||||||||||||||| | |||||||||||| || | | Sbjct: 1193 ccttcgacatcttggacttggcttttactttgggggctctctcctcgagctcttcctcgc 1134 Query: 507 gtgcaagttccctttctctggcttccaggttcctttgaaggta 549 | |||||||||||||||| |||||| |||||||| | |||||| Sbjct: 1133 gggcaagttccctttctcgggcttcaaggttcctctcaaggta 1091 Score = 63.9 bits (32), Expect = 6e-07 Identities = 59/68 (86%) Strand = Plus / Minus Query: 227 atctcagttccacctctttgagttcttcattgattttgatttctgcttgctttgttggaa 286 |||||||||||||| ||| |||||||| | || || |||||||||||||| || ||||| Sbjct: 1291 atctcagttccaccgcttcgagttcttaagcgacttggatttctgcttgctctgctggaa 1232 Query: 287 ggcctgca 294 |||||||| Sbjct: 1231 ggcctgca 1224
>gb|AF091802.1|AF091802 Aegilops tauschii starch synthase I gene, complete cds Length = 11387 Score = 58.0 bits (29), Expect = 4e-05 Identities = 45/49 (91%), Gaps = 1/49 (2%) Strand = Plus / Plus Query: 589 atgttgtgacaagtgttcgaagaaagtgatggcaacactaatgacttcc 637 ||||||||||||||||||||| |||||||| | ||||||||||||||| Sbjct: 8530 atgttgtgacaagtgttcgaa-caagtgatgtcgacactaatgacttcc 8577
>gb|DQ469712.1| Hordeum vulgare subsp. vulgare serine/threonine kinase-like protein ABC1036 gene, complete cds Length = 29663 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Plus Query: 589 atgttgtgacaagtgttcgaagaaagtgatggcaacactaatgactt 635 ||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 21641 atgttgtgacaagtgttcgaa-caagtgatggcgacactgatgactt 21686
>gb|AF064563.1|AF064563 Hordeum vulgare cultivar Bomi starch branching enzyme IIb (sbeIIb) gene, nuclear gene encoding plastid protein, partial cds Length = 3960 Score = 54.0 bits (27), Expect = 6e-04 Identities = 43/47 (91%), Gaps = 1/47 (2%) Strand = Plus / Minus Query: 589 atgttgtgacaagtgttcgaagaaagtgatggcaacactaatgactt 635 ||||||||||||||||||||| |||||||||| ||||| ||||||| Sbjct: 2189 atgttgtgacaagtgttcgaa-caagtgatggcgacactgatgactt 2144
>gb|AC131915.7| Mus musculus chromosome 5, clone RP24-491C20, complete sequence Length = 154195 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 457 ttttgacttggcttttacttt 477 ||||||||||||||||||||| Sbjct: 48858 ttttgacttggcttttacttt 48838
>gb|AC150558.1| Drosophila melanogaster clone BACR01N08, complete sequence Length = 174139 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 tcttcattgattttgatttct 270 ||||||||||||||||||||| Sbjct: 120633 tcttcattgattttgatttct 120653
>gb|AC145900.3| Pan troglodytes BAC clone RP43-40I9 from 7, complete sequence Length = 160229 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 409 caaggaagttcaggaaagaat 429 ||||||||||||||||||||| Sbjct: 2927 caaggaagttcaggaaagaat 2947
>gb|AC126408.6| Mus musculus chromosome 13, clone RP23-216P14, complete sequence Length = 238967 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 tctctggcttccaggttcctt 541 ||||||||||||||||||||| Sbjct: 232024 tctctggcttccaggttcctt 232004
>gb|AC133205.3| Mus musculus BAC clone RP23-108P11 from chromosome 13, complete sequence Length = 205640 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 521 tctctggcttccaggttcctt 541 ||||||||||||||||||||| Sbjct: 155867 tctctggcttccaggttcctt 155847
>gb|AC115883.13| Mus musculus chromosome 3, clone RP24-376N4, complete sequence Length = 180645 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 251 cttcattgattttgatttctgcttg 275 |||||||||||||||||| |||||| Sbjct: 61528 cttcattgattttgatttttgcttg 61552
>gb|AC125095.3| Mus musculus BAC clone RP24-179H12 from chromosome 14, complete sequence Length = 147123 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 555 acaaagataaagaataaaata 575 ||||||||||||||||||||| Sbjct: 18739 acaaagataaagaataaaata 18719
>gb|AC123061.4| Mus musculus BAC clone RP23-216H22 from 14, complete sequence Length = 193093 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 555 acaaagataaagaataaaata 575 ||||||||||||||||||||| Sbjct: 278 acaaagataaagaataaaata 298
>gb|AC108392.17| Mus musculus chromosome 10, clone RP23-121B23, complete sequence Length = 207763 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 557 aaagataaagaataaaatatc 577 ||||||||||||||||||||| Sbjct: 179728 aaagataaagaataaaatatc 179748
>emb|AJ271736.1|HSA271736 Homo sapiens Xq pseudoautosomal region; segment 2/2 Length = 158661 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 ggcctgcactttttgtttctt 307 ||||||||||||||||||||| Sbjct: 55166 ggcctgcactttttgtttctt 55146
>gb|AC073563.3| Mus musculus strain C57BL/6J chromosome 12 clone RP23-24I12, complete sequence Length = 205468 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 gataaagaataaaatatcatg 580 ||||||||||||||||||||| Sbjct: 75319 gataaagaataaaatatcatg 75299
>gb|AC073589.6| Mus musculus strain C57BL/6J chromosome 12 clone RP23-147E23, complete sequence Length = 222430 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 gataaagaataaaatatcatg 580 ||||||||||||||||||||| Sbjct: 206618 gataaagaataaaatatcatg 206598
>gb|AC016623.6| Homo sapiens chromosome 5 clone CTD-2345N17, complete sequence Length = 153823 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 552 actacaaagataaagaataaaatat 576 |||||||||||||| |||||||||| Sbjct: 7750 actacaaagataaacaataaaatat 7726
>gb|AC093177.1| Drosophila melanogaster, chromosome 2L, region 36A-36B, BAC clone BACR33A07, complete sequence Length = 174726 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 tcttcattgattttgatttct 270 ||||||||||||||||||||| Sbjct: 111919 tcttcattgattttgatttct 111899
>gb|AC073536.5| Homo sapiens chromosome 5 clone CTD-2068E4, complete sequence Length = 116993 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 552 actacaaagataaagaataaaatat 576 |||||||||||||| |||||||||| Sbjct: 4806 actacaaagataaacaataaaatat 4782
>gb|AC092398.1|AC092398 Drosophila melanogaster, chromosome 2L, region 36X-36X, BAC clone BACR03G19, complete sequence Length = 165839 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 tcttcattgattttgatttct 270 ||||||||||||||||||||| Sbjct: 120633 tcttcattgattttgatttct 120653
>gb|AC116632.3| Homo sapiens BAC clone RP11-431F21 from 2, complete sequence Length = 11829 Score = 42.1 bits (21), Expect = 2.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 455 atttttgacttggcttttactttgg 479 |||||||||||| |||||||||||| Sbjct: 3917 atttttgacttgacttttactttgg 3941
>tpe|BN000872.1| TPA: TPA_exp: Mus musculus immunoglobulin heavy chain variable region locus, strain C57BL/6 Length = 2500000 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 gataaagaataaaatatcatg 580 ||||||||||||||||||||| Sbjct: 1988546 gataaagaataaaatatcatg 1988526
>gb|AE003651.2| Drosophila melanogaster chromosome 2L, section 60 of 83 of the complete sequence Length = 254646 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 250 tcttcattgattttgatttct 270 ||||||||||||||||||||| Sbjct: 47473 tcttcattgattttgatttct 47493
>emb|AJ851868.2| Mus musculus immunoglobulin heavy chain locus constant region and partial variable region, strain 129/Sv Length = 1382053 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 560 gataaagaataaaatatcatg 580 ||||||||||||||||||||| Sbjct: 214803 gataaagaataaaatatcatg 214783
>emb|CR382128.1| Yarrowia lipolytica chromosome B of strain CLIB122 of Yarrowia lipolytica Length = 3066374 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 206 caccgccgatcagggggcagc 226 ||||||||||||||||||||| Sbjct: 1197452 caccgccgatcagggggcagc 1197472
>emb|AJ225782.1|HSSYBL16 Homo sapiens SYBL1 gene, exons 6-8 Length = 39163 Score = 42.1 bits (21), Expect = 2.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 287 ggcctgcactttttgtttctt 307 ||||||||||||||||||||| Sbjct: 18111 ggcctgcactttttgtttctt 18091
>gb|AC104203.11| Mus musculus chromosome 5, clone RP24-301M6, complete sequence Length = 174779 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 ctctttgagttcttcattgatttt 263 ||||||| |||||||||||||||| Sbjct: 135869 ctctttgtgttcttcattgatttt 135846
>ref|NM_009841.2| Mus musculus CD14 antigen (Cd14), mRNA Length = 1510 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 83 ttctctggcttccaggttcc 64
>gb|AC118245.17| Mus musculus chromosome 6, clone RP23-292C5, complete sequence Length = 230218 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 522 ctctggcttccaggttcctt 541 |||||||||||||||||||| Sbjct: 210782 ctctggcttccaggttcctt 210801
>gb|AC122039.4| Mus musculus BAC clone RP24-432H3 from chromosome 6, complete sequence Length = 169274 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 522 ctctggcttccaggttcctt 541 |||||||||||||||||||| Sbjct: 159858 ctctggcttccaggttcctt 159839
>gb|AC123802.2| Mus musculus BAC clone RP24-398M15 from 3, complete sequence Length = 121242 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 aaagataaagaataaaatat 576 |||||||||||||||||||| Sbjct: 16376 aaagataaagaataaaatat 16357
>gb|AC100752.10| Mus musculus chromosome 3, clone RP23-2A4, complete sequence Length = 208757 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aaagataaagaataaaatat 576 |||||||||||||||||||| Sbjct: 533 aaagataaagaataaaatat 552
>emb|AL591173.6| Human DNA sequence from clone RP11-316O2 on chromosome 1, complete sequence Length = 78296 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 449 tttgacatttttgacttggctttt 472 |||||||||||| ||||||||||| Sbjct: 40901 tttgacattttttacttggctttt 40924
>gb|AC138435.2| Artibeus jamaicensis clone 21H16, complete sequence Length = 95559 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 aggcaaacgaaaccatagcaatacagta 391 ||||||||||| || ||||||||||||| Sbjct: 47203 aggcaaacgaacccttagcaatacagta 47230
>emb|AL353765.3| Human DNA sequence from clone RP11-429G17 on chromosome 13 Contains a ras-related C3 botulinum toxin substrate 1 (rho family, small GTP binding protein Rac1) (RAC1) pseudogene, complete sequence Length = 164831 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ataaagaataaaatatcatg 580 |||||||||||||||||||| Sbjct: 10461 ataaagaataaaatatcatg 10480
>gb|AC027740.11| Mus musculus, clone RP23-57M1, complete sequence Length = 261093 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 183119 ttctctggcttccaggttcc 183138
>gb|AC069067.17| Homo sapiens 3 BAC RP11-454C18 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172213 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 563 aaagaataaaatatcatgac 582 |||||||||||||||||||| Sbjct: 108040 aaagaataaaatatcatgac 108021
>emb|AL049613.2|HS231N13 Human DNA sequence from clone RP1-231N13 on chromosome 6q22, complete sequence Length = 120000 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 557 aaagataaagaataaaatat 576 |||||||||||||||||||| Sbjct: 82482 aaagataaagaataaaatat 82501
>gb|AC161377.6| Mus musculus BAC clone RP23-224D3 from chromosome 16, complete sequence Length = 201384 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 561 ataaagaataaaatatcatg 580 |||||||||||||||||||| Sbjct: 178028 ataaagaataaaatatcatg 178009
>gb|AC150252.1| Unidentified bacterium clone zdt-48a5, complete sequence Length = 38838 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 405 gatacaaggaagttcaggaa 424 |||||||||||||||||||| Sbjct: 29923 gatacaaggaagttcaggaa 29904
>dbj|AP007155.1| Aspergillus oryzae RIB40 genomic DNA, SC003 Length = 4170692 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 304 tcttccttgcaagtttctcg 323 |||||||||||||||||||| Sbjct: 1070390 tcttccttgcaagtttctcg 1070371
>dbj|AK156262.1| Mus musculus activated spleen cDNA, RIKEN full-length enriched library, clone:F830014B16 product:CD14 antigen, full insert sequence Length = 1440 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 33 ttctctggcttccaggttcc 14
>dbj|AK149744.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:G530014M01 product:CD14 antigen, full insert sequence Length = 1578 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 171 ttctctggcttccaggttcc 152
>dbj|AK152427.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830071I02 product:CD14 antigen, full insert sequence Length = 1441 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 33 ttctctggcttccaggttcc 14
>dbj|AK153229.1| Mus musculus bone marrow macrophage cDNA, RIKEN full-length enriched library, clone:I830128I10 product:CD14 antigen, full insert sequence Length = 1446 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 34 ttctctggcttccaggttcc 15
>gb|AC092417.2| Homo sapiens chromosome 3 clone RP11-90M23, complete sequence Length = 167263 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 catttttgacttggcttttacttt 477 |||||||||||| ||||||||||| Sbjct: 124932 catttttgactttgcttttacttt 124955
>gb|AC159144.4| Medicago truncatula chromosome 7 BAC clone mth2-41a4, complete sequence Length = 55550 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 293 cactttttgtttcttccttg 312 |||||||||||||||||||| Sbjct: 38390 cactttttgtttcttccttg 38409
>gb|AC149490.2| Medicago truncatula chromosome 2 BAC clone mth2-29n15, complete sequence Length = 53286 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 557 aaagataaagaataaaatat 576 |||||||||||||||||||| Sbjct: 20216 aaagataaagaataaaatat 20197
>gb|DP000001.1| Artibeus jamaicensis target 1 genomic scaffold Length = 584809 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Plus Query: 364 aggcaaacgaaaccatagcaatacagta 391 ||||||||||| || ||||||||||||| Sbjct: 536453 aggcaaacgaacccttagcaatacagta 536480
>gb|AC154371.2| Mus musculus BAC clone RP23-102A13 from chromosome 14, complete sequence Length = 206234 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 447 cctttgacatttttgacttg 466 |||||||||||||||||||| Sbjct: 114173 cctttgacatttttgacttg 114154
>gb|AC154208.2| Mus musculus BAC clone RP24-377L12 from chromosome 16, complete sequence Length = 178006 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 561 ataaagaataaaatatcatg 580 |||||||||||||||||||| Sbjct: 169735 ataaagaataaaatatcatg 169754
>gb|AC087795.5|AC087795 Genomic Sequence for Mus musculus, clone RP23-181H5, complete sequence Length = 220811 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 182593 ttctctggcttccaggttcc 182612
>gb|AC010139.4|AC010139 Homo sapiens BAC clone RP11-194G10 from 3, complete sequence Length = 161407 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 aaagaataaaatatcatgac 582 |||||||||||||||||||| Sbjct: 33426 aaagaataaaatatcatgac 33445
>gb|AC017016.5|AC017016 Homo sapiens BAC clone RP11-152H13 from 3, complete sequence Length = 180681 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 563 aaagaataaaatatcatgac 582 |||||||||||||||||||| Sbjct: 62175 aaagaataaaatatcatgac 62194
>gb|AC107218.4| Homo sapiens BAC clone RP11-561A13 from 2, complete sequence Length = 164620 Score = 40.1 bits (20), Expect = 8.7 Identities = 26/28 (92%) Strand = Plus / Minus Query: 299 ttgtttcttccttgcaagtttctcggcc 326 |||||||| |||||||||||||| |||| Sbjct: 58820 ttgtttctgccttgcaagtttctaggcc 58793
>ref|NM_001015505.1| Drosophila melanogaster CG17866-PA.3 (CG17866), mRNA Length = 10863 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 aagaataaaatatcatgactttta 587 ||||||||||||||||||| |||| Sbjct: 676 aagaataaaatatcatgacattta 653
>gb|AF313479.1|AF313479 Drosophila melanogaster 1-beta dynein (kl-2) mRNA, partial cds Length = 12511 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 aagaataaaatatcatgactttta 587 ||||||||||||||||||| |||| Sbjct: 692 aagaataaaatatcatgacattta 669
>emb|BX005481.11| Zebrafish DNA sequence from clone CH211-79C1 in linkage group 1, complete sequence Length = 170604 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 515 tccctttctctggcttccag 534 |||||||||||||||||||| Sbjct: 166923 tccctttctctggcttccag 166904
>gb|BC057889.1| Mus musculus CD14 antigen, mRNA (cDNA clone MGC:68190 IMAGE:4981093), complete cds Length = 1510 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 83 ttctctggcttccaggttcc 64
>dbj|AP006193.1| Homo sapiens genomic DNA, chromosome 3, clone:RP11-815I22, complete sequence Length = 205834 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Plus Query: 454 catttttgacttggcttttacttt 477 |||||||||||| ||||||||||| Sbjct: 36088 catttttgactttgcttttacttt 36111
>dbj|D10912.1|MUSCD14J Mus musculus CD14 gene, exon 1 and 5'-flanking region Length = 1520 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 1376 ttctctggcttccaggttcc 1357
>gb|BC084912.1| Xenopus laevis hypothetical LOC495412, mRNA (cDNA clone MGC:78907 IMAGE:4175407), complete cds Length = 4536 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ttttgatttctgcttgcttt 279 |||||||||||||||||||| Sbjct: 763 ttttgatttctgcttgcttt 744
>gb|CP000214.1| Drosophila melanogaster genomic scaffold 211000022280774 Length = 95730 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 564 aagaataaaatatcatgactttta 587 ||||||||||||||||||| |||| Sbjct: 15353 aagaataaaatatcatgacattta 15330
>gb|AC003657.1|AC003657 Homo sapiens Xp22 BAC GS-602M16 (Genome Systems Human BAC library) complete sequence Length = 65716 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 521 tctctggcttccaggttcct 540 |||||||||||||||||||| Sbjct: 53436 tctctggcttccaggttcct 53417
>gb|BC110965.1| Xenopus laevis cDNA clone MGC:132260 IMAGE:5512712, complete cds Length = 2801 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 260 ttttgatttctgcttgcttt 279 |||||||||||||||||||| Sbjct: 737 ttttgatttctgcttgcttt 718
>emb|X13987.1|MMCD14 Mouse CD14 gene Length = 2404 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 656 ttctctggcttccaggttcc 637
>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete sequence Length = 226854 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 149 cagcacaccaggggcctgcc 168 |||||||||||||||||||| Sbjct: 3977 cagcacaccaggggcctgcc 3958
>gb|M34510.1|MUSCD14A Mouse monocyte/granulocyte cell surface glycoprotein homologous (CD14) gene, complete cds, clone pMCD14/5 Length = 1873 Score = 40.1 bits (20), Expect = 8.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 520 ttctctggcttccaggttcc 539 |||||||||||||||||||| Sbjct: 92 ttctctggcttccaggttcc 73
>dbj|AP000500.1| Homo sapiens genomic DNA, chromosome 3p21.3, clone:603 to 320, anti-oncogene region, section 3/3 Length = 254437 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 catttttgacttggcttttacttt 477 |||||||||||| ||||||||||| Sbjct: 79946 catttttgactttgcttttacttt 79923
>dbj|AB026899.1| Homo sapiens DNA, DLEC1 to ORCTL4 gene region, section 2/2 (downstream sequence from ORCTL4) Length = 80485 Score = 40.1 bits (20), Expect = 8.7 Identities = 23/24 (95%) Strand = Plus / Minus Query: 454 catttttgacttggcttttacttt 477 |||||||||||| ||||||||||| Sbjct: 42617 catttttgactttgcttttacttt 42594 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 6,845,874 Number of Sequences: 3902068 Number of extensions: 6845874 Number of successful extensions: 143503 Number of sequences better than 10.0: 76 Number of HSP's better than 10.0 without gapping: 76 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 143213 Number of HSP's gapped (non-prelim): 289 length of query: 637 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 614 effective length of database: 17,143,297,704 effective search space: 10525984790256 effective search space used: 10525984790256 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)