ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61l23 |
|---|---|
| Clone Library Name | barley_pub |
>CLIC1_MOUSE (Q9Z1Q5) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) Length = 240 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL +QV ++G +PE VH Y ++R F T P Sbjct: 166 FLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDD 225 Query: 326 KNL 318 + + Sbjct: 226 EEI 228
>CLIC1_HUMAN (O00299) Chloride intracellular channel protein 1 (Nuclear chloride| ion channel 27) (NCC27) (Chloride channel ABP) (Regulatory nuclear chloride ion channel protein) (hRNCC) Length = 240 Score = 43.1 bits (100), Expect = 5e-04 Identities = 18/63 (28%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL +QV ++G +PE VH Y ++R F T P Sbjct: 166 FLDGNELTLADCNLLPKLHIVQVVCKKYRGFTIPEAFRGVHRYLSNAYAREEFASTCPDD 225 Query: 326 KNL 318 + + Sbjct: 226 EEI 228
>CLIC1_RABIT (Q95MF9) Chloride intracellular channel protein 1| Length = 240 Score = 40.8 bits (94), Expect = 0.002 Identities = 18/63 (28%), Positives = 31/63 (49%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL +QV +G +PE VH Y ++R F T P Sbjct: 166 FLDGNELTLADCNLLPKLHIVQVVCKKNRGFTIPEVFRGVHRYLSNAYAREEFASTCPDD 225 Query: 326 KNL 318 + + Sbjct: 226 EEI 228
>CLIC4_BOVIN (Q9XSA7) Chloride intracellular channel protein 4 (Intracellular| chloride ion channel protein p64H1) (Fragment) Length = 158 Score = 39.3 bits (90), Expect = 0.007 Identities = 17/63 (26%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL ++V ++ +PE T + Y +SR F T P+ Sbjct: 83 FLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPEGMTGIWRYLTNAYSRDEFTNTCPSD 142 Query: 326 KNL 318 K + Sbjct: 143 KEV 145
>CLIC3_MOUSE (Q9D7P7) Chloride intracellular channel protein 3| Length = 237 Score = 38.9 bits (89), Expect = 0.009 Identities = 17/72 (23%), Positives = 33/72 (45%) Frame = -2 Query: 521 KAHGPYINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVK 342 ++H +++G + D SL PKL + HF+ +P + V Y ++ + F Sbjct: 159 ESHRRFLDGDQFTLADCSLLPKLHIVDTVCAHFRQLPIPAELSCVRRYLDSALQKKEFKY 218 Query: 341 TXPTKKNLIAGW 306 T P ++A + Sbjct: 219 TCPHSAEILAAY 230
>CLIC4_HUMAN (Q9Y696) Chloride intracellular channel protein 4 (Intracellular| chloride ion channel protein p64H1) Length = 252 Score = 38.1 bits (87), Expect = 0.015 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL ++V ++ +P+ T + Y +SR F T P+ Sbjct: 177 FLDGNEMTLADCNLLPKLHIVKVVAKKYRNFDIPKEMTGIWRYLTNAYSRDEFTNTCPSD 236 Query: 326 KNL 318 K + Sbjct: 237 KEV 239
>CLIC4_RAT (Q9Z0W7) Chloride intracellular channel protein 4 (Intracellular| chloride ion channel protein p64H1) Length = 252 Score = 37.7 bits (86), Expect = 0.019 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL ++V ++ +P+ T + Y +SR F T P+ Sbjct: 177 FLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSD 236 Query: 326 KNL 318 K + Sbjct: 237 KEV 239
>CLIC4_MOUSE (Q9QYB1) Chloride intracellular channel protein 4 (mc3s5/mtCLIC)| Length = 252 Score = 37.7 bits (86), Expect = 0.019 Identities = 16/63 (25%), Positives = 32/63 (50%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D +L PKL ++V ++ +P+ T + Y +SR F T P+ Sbjct: 177 FLDGDEMTLADCNLLPKLHIVKVVAKKYRNFDIPKGMTGIWRYLTNAYSRDEFTNTCPSD 236 Query: 326 KNL 318 K + Sbjct: 237 KEV 239
>CLIC3_HUMAN (O95833) Chloride intracellular channel protein 3| Length = 236 Score = 36.6 bits (83), Expect = 0.043 Identities = 16/67 (23%), Positives = 29/67 (43%) Frame = -2 Query: 506 YINGANVSAXDLSLAPKLFHLQVALXHFKGXKVPETXTSVHAYTEALFSRXSFVKTXPTK 327 +++G ++ D SL PKL + HF+ +P V Y ++ F T P Sbjct: 163 FLDGDRLTLADCSLLPKLHIVDTVCAHFRQAPIPAELRGVRRYLDSAMQEKEFKYTCPHS 222 Query: 326 KNLIAGW 306 ++A + Sbjct: 223 AEILAAY 229
>CREA_GIBFU (O94131) DNA-binding protein creA (Carbon catabolite repressor)| Length = 420 Score = 32.0 bits (71), Expect = 1.1 Identities = 17/47 (36%), Positives = 24/47 (51%) Frame = +1 Query: 55 LTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPRS 195 LTAPP H++ NH H P G +H++ L RSH ++ S Sbjct: 215 LTAPPHHSN-NHRHHPYFGHGMHSSRGHLPTLSSYHMGRSHSNEDPS 260
>ZAP1_YEAST (P47043) Zinc-responsive transcriptional regulator ZAP1| Length = 880 Score = 32.0 bits (71), Expect = 1.1 Identities = 19/71 (26%), Positives = 34/71 (47%), Gaps = 3/71 (4%) Frame = +1 Query: 16 HTIKGSHHNTCTPLTAPPEHTHHN---HTHKPGRGQTVHAASARLRQAEHTAEARSHYSK 186 + + GS++NT + +H HH H+HKP R V+ ++ + A TA+ ++ Sbjct: 442 NNLNGSNNNTAGATSTDHQHHHHRIQFHSHKPNRNNIVN--NSGISAANTTADLTNNDLN 499 Query: 187 PRSTMRPSYRR 219 + SY R Sbjct: 500 DLISREYSYER 510
>OPA_DROME (P39768) Pair-rule protein odd-paired| Length = 609 Score = 31.6 bits (70), Expect = 1.4 Identities = 14/35 (40%), Positives = 16/35 (45%) Frame = +1 Query: 52 PLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH 156 PL PP H HH H H+ AASA + H Sbjct: 522 PLGPPPSHHHHPHHHQAAPSPGAAAASASMLHHNH 556
>PC_DROME (P26017) Polycomb group protein Pc (Protein polycomb)| Length = 390 Score = 30.4 bits (67), Expect = 3.1 Identities = 15/41 (36%), Positives = 23/41 (56%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASA 135 HH IK S N+ +P H HH+H H+ R + H++S+ Sbjct: 141 HHHIK-SERNSGRRSESPLTHHHHHHHHESKRQRIDHSSSS 180
>KNOB_PLAFN (P06719) Knob-associated histidine-rich protein precursor (KAHRP)| Length = 657 Score = 30.4 bits (67), Expect = 3.1 Identities = 18/61 (29%), Positives = 23/61 (37%), Gaps = 1/61 (1%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPE-HTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKP 189 HH HH P AP + H HH+H + VH QA H H+ P Sbjct: 65 HHHHHHHHHQHQAPHQAPHQAHHHHHHGEVNHQAPQVHQQVHGQDQAHHHHHHHHHHLHP 124 Query: 190 R 192 + Sbjct: 125 Q 125
>PO3F1_MOUSE (P21952) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) Length = 449 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/44 (31%), Positives = 18/44 (40%) Frame = +1 Query: 10 LHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 141 LHH + H + PP H H H +HAA+A L Sbjct: 185 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 228
>PO3F1_HUMAN (Q03052) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) Length = 448 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/44 (31%), Positives = 18/44 (40%) Frame = +1 Query: 10 LHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 141 LHH + H + PP H H H +HAA+A L Sbjct: 184 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 227
>PO3F1_RAT (P20267) POU domain, class 3, transcription factor 1| (Octamer-binding transcription factor 6) (Oct-6) (POU-domain transcription factor SCIP) (Tst-1) Length = 451 Score = 30.0 bits (66), Expect = 4.0 Identities = 14/44 (31%), Positives = 18/44 (40%) Frame = +1 Query: 10 LHHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARL 141 LHH + H + PP H H H +HAA+A L Sbjct: 187 LHHALHEDGHEAQLEPSPPPHLGAHGHAHGHAHAGGLHAAAAHL 230
>DYRK2_DROME (Q9V3D5) Dual specificity tyrosine-phosphorylation-regulated kinase| 2 (EC 2.7.12.1) (dDyrk2) (Protein smell impaired at 35A) Length = 722 Score = 30.0 bits (66), Expect = 4.0 Identities = 13/51 (25%), Positives = 25/51 (49%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAE 165 HH + +HHN T A H HH+H + + + A++ + ++ T + Sbjct: 664 HHNV--THHNASTATIATTTHHHHHHGGQQQQQSSSGASTMAMSHSQSTGD 712
>ASR_ECOLI (P36560) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>ASR_ECOL6 (Q8CW15) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHA-------ASARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q A A A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNAKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>ASR_ECO57 (Q8X783) Acid shock protein precursor| Length = 102 Score = 30.0 bits (66), Expect = 4.0 Identities = 18/61 (29%), Positives = 25/61 (40%), Gaps = 7/61 (11%) Frame = +1 Query: 49 TPLTAPPEHTHHNHTHKPGRGQTVHAA-------SARLRQAEHTAEARSHYSKPRSTMRP 207 T AP + THH HK Q AA A + E A+A ++K S +P Sbjct: 34 TTKAAPAKTTHHKKQHKAAPAQKAQAAKKHHKNTKAEQKAPEQKAQAAKKHAKKHSHQQP 93 Query: 208 S 210 + Sbjct: 94 A 94
>QIN_AVIS3 (P56260) Transforming protein Qin (Oncogene Qin)| Length = 387 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 162 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>CAC1A_RABIT (P27884) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide isoform 4) (Brain calcium channel I) (BI) Length = 2424 Score = 29.6 bits (65), Expect = 5.3 Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 2/35 (5%) Frame = +1 Query: 73 HTHHNHTHKPGR--GQTVHAASARLRQAEHTAEAR 171 H HH+H H PGR G+ SAR R+ A R Sbjct: 2219 HHHHHHHHHPGRGPGRVSPGVSARRRRRGPVARVR 2253
>FOXGB_CHICK (Q90964) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (CBF-1) (Proto-oncogene C-QIN) (N-62-5) (CEQ 3-1) Length = 451 Score = 29.6 bits (65), Expect = 5.3 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTA 162 SHHN+ P H HH+H H P Q A+A + E A Sbjct: 37 SHHNS-----HHPHHHHHHHHHHPPPPQQPQRAAAAEEEDEEKA 75
>VND_DROME (P22808) Homeobox protein vnd (Protein ventral nervous system| defective) (Homeobox protein NK-2) Length = 723 Score = 29.3 bits (64), Expect = 6.9 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEH-TAEARSH 177 HH+ H P P H H+H H Q A A L A H + EA+SH Sbjct: 281 HHSTTEHHAPPSHPQQQHPHHQQHHHPHLLLPQQHHQQAVAPLPLAHHQSGEAQSH 336
>YKS7_YEAST (P34231) Protein YKL187C| Length = 750 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -2 Query: 509 PYINGANVSAXDLSLAPKLFH 447 PY+N N+SA DL L KL H Sbjct: 513 PYLNALNISANDLYLEGKLLH 533
>HYCG_ECOLI (P16433) Formate hydrogenlyase subunit 7 (FHL subunit 7)| (Hydrogenase-3 component G) Length = 255 Score = 28.9 bits (63), Expect = 9.0 Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 1/43 (2%) Frame = -2 Query: 161 AVCSACRKRALAAWTVCPLPGLCV*LW-CVCSGGAVKGVHVLW 36 AV A R AL AW P P +C+ C SGG ++ +W Sbjct: 87 AVTRAMRSPALRAWQSAPDPKICISYGACGNSGGIFHDLYCVW 129
>SDC1_HUMAN (P18827) Syndecan-1 precursor (SYND1) (CD138 antigen)| Length = 310 Score = 28.9 bits (63), Expect = 9.0 Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 4/55 (7%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHA----ASARLRQAEHTAE 165 H ++ HH T TP H HT G T A AS++L AE + E Sbjct: 154 HRDMQPGHHETSTPAGPSQADLHTPHTEDGGPSATERAAEDGASSQLPAAEGSGE 208
>TBX19_MOUSE (Q99ME7) T-box transcription factor TBX19 (T-box protein 19) (T-box| factor, pituitary) Length = 446 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/29 (41%), Positives = 14/29 (48%) Frame = +1 Query: 19 TIKGSHHNTCTPLTAPPEHTHHNHTHKPG 105 T S++ TPL P HTHH H G Sbjct: 254 TAANSNYQYATPLPLPAPHTHHGCEHYAG 282
>IST2_YEAST (P38250) Increased sodium tolerance protein 2| Length = 946 Score = 28.9 bits (63), Expect = 9.0 Identities = 14/54 (25%), Positives = 24/54 (44%) Frame = +1 Query: 31 SHHNTCTPLTAPPEHTHHNHTHKPGRGQTVHAASARLRQAEHTAEARSHYSKPR 192 S++NT T T HH+H H R V + + E ++ + + KP+ Sbjct: 880 SNNNTTTTTTTDATQPHHHHHHHRHRDAGVKNVTNNSKTTESSSSSSAAKEKPK 933
>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon) (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2167 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 102 HH HH+ APP HH+H H P Sbjct: 1006 HHPPHHHHHH------APPPQPHHHHAHPP 1029
>MTP1_ARATH (Q9ZT63) Metal tolerance protein 1 (AtMTP1) (Zinc transporter| ZAT-1) (ZAT1p) [Contains: Metal tolerance protein 1 short form] Length = 398 Score = 28.9 bits (63), Expect = 9.0 Identities = 13/34 (38%), Positives = 16/34 (47%), Gaps = 2/34 (5%) Frame = +1 Query: 34 HHNTCTPLTAPPEHTHHNHT--HKPGRGQTVHAA 129 HHN +T H HH+H H G G+ H A Sbjct: 198 HHNHSHGVTVTTHHHHHDHEHGHSHGHGEDKHHA 231
>SHAN1_HUMAN (Q9Y566) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)| (Somatostatin receptor-interacting protein) (SSTR-interacting protein) (SSTRIP) Length = 2161 Score = 28.9 bits (63), Expect = 9.0 Identities = 12/30 (40%), Positives = 14/30 (46%) Frame = +1 Query: 13 HHTIKGSHHNTCTPLTAPPEHTHHNHTHKP 102 HH HH+ APP HH+H H P Sbjct: 998 HHPPHHHHHH------APPPQPHHHHAHPP 1021 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,796,756 Number of Sequences: 219361 Number of extensions: 1192040 Number of successful extensions: 4282 Number of sequences better than 10.0: 33 Number of HSP's better than 10.0 without gapping: 3871 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4180 length of database: 80,573,946 effective HSP length: 105 effective length of database: 57,541,041 effective search space used: 3970331829 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
