ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | rbah61l23 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY074784.1| Triticum aestivum dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 956 Score = 321 bits (162), Expect = 1e-84 Identities = 225/248 (90%) Strand = Plus / Minus Query: 274 ggcgggggagcttacgggttcaccttcggcgcccacccggcgatcaggttcttcttggtc 333 |||||| | |||||||||||||| |||||||||||||||||||||||||||| ||||||| Sbjct: 724 ggcgggagggcttacgggttcactttcggcgcccacccggcgatcaggttctccttggtc 665 Query: 334 ggnttggtcttgacgaacgactnacggctgaagagagcctcggtgtaagcatggacgctg 393 | ||||||||||||||||||| ||||||||||||||||||||||| |||||||||||| Sbjct: 664 gccttggtcttgacgaacgactcgcggctgaagagagcctcggtgtaggcatggacgctg 605 Query: 394 gtcantgtttcagggaccttncagcctttgaagtgctncagggcaacctggaggtggaag 453 |||| |||||||||||||| ||||| |||||||||| |||||| |||||||| ||| || Sbjct: 604 gtcagggtttcagggaccttccagcccttgaagtgctccagggcgacctggagatggtag 545 Query: 454 agcttcggagccaagctgagatccncggcggagacgttcgccccgttgatgtagggtcca 513 ||||||||||||| ||||||||| | ||||||| ||||||||| ||||||||||||||| Sbjct: 544 agcttcggagccaggctgagatcgacagcggagatgttcgccccattgatgtagggtcca 485 Query: 514 tgggcctt 521 |||||||| Sbjct: 484 tgggcctt 477 Score = 44.1 bits (22), Expect = 0.45 Identities = 22/22 (100%) Strand = Plus / Minus Query: 164 aggctcgctcgcattattccaa 185 |||||||||||||||||||||| Sbjct: 806 aggctcgctcgcattattccaa 785
>gb|DQ090998.1| Puccinellia tenuiflora dehydroascorbate reductase protein mRNA, partial cds Length = 202 Score = 192 bits (97), Expect = 8e-46 Identities = 155/176 (88%) Strand = Plus / Minus Query: 283 gcttacgggttcaccttcggcgcccacccggcgatcaggttcttcttggtcggnttggtc 342 |||||||||||||| || |||||||| |||||||||||||||| |||||| || |||||| Sbjct: 200 gcttacgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtc 141 Query: 343 ttgacgaacgactnacggctgaagagagcctcggtgtaagcatggacgctggtcantgtt 402 |||||||| || | |||||||| ||||||| |||||| |||||||||||||||| ||| Sbjct: 140 ttgacgaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtt 81 Query: 403 tcagggaccttncagcctttgaagtgctncagggcaacctggaggtggaagagctt 458 || |||||||| || |||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 80 tcggggaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>gb|DQ093638.1| Eustoma grandiflorum dehydroascorbate reductase protein mRNA, partial cds Length = 195 Score = 190 bits (96), Expect = 3e-45 Identities = 151/171 (88%) Strand = Plus / Minus Query: 288 cgggttcaccttcggcgcccacccggcgatcaggttcttcttggtcggnttggtcttgac 347 ||||||||| || |||||||| |||||||||||||||| |||||| || ||||||||||| Sbjct: 195 cgggttcactttgggcgcccatccggcgatcaggttctccttggtgggcttggtcttgac 136 Query: 348 gaacgactnacggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagg 407 ||| || | |||||||| ||||||| |||||| |||||||||||||||| |||||||| Sbjct: 135 gaaggattcccggctgaacagagccttggtgtaggcatggacgctggtcagggtttcagg 76 Query: 408 gaccttncagcctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||||| || |||||||| |||| ||||||||||||||| ||||||||||| Sbjct: 75 gaccttccatcctttgaaatgctccagggcaacctggagatggaagagctt 25
>emb|AJ622892.1| Triticum durum partial mRNA for DRP5 protein (drg5 gene) Length = 478 Score = 176 bits (89), Expect = 5e-41 Identities = 113/122 (92%) Strand = Plus / Plus Query: 400 gtttcagggaccttncagcctttgaagtgctncagggcaacctggaggtggaagagcttc 459 |||||||||||||| ||||| |||||||||| |||||| |||||||||||| |||||||| Sbjct: 7 gtttcagggaccttccagcccttgaagtgctccagggcgacctggaggtggtagagcttc 66 Query: 460 ggagccaagctgagatccncggcggagacgttcgccccgttgatgtagggtccatgggcc 519 ||||||| ||||||||| ||||||||| ||||||||||||||||||||||||||||||| Sbjct: 67 ggagccaggctgagatcgacggcggagatgttcgccccgttgatgtagggtccatgggcc 126 Query: 520 tt 521 || Sbjct: 127 tt 128
>gb|AY106435.1| Zea mays PCO106999 mRNA sequence Length = 1141 Score = 67.9 bits (34), Expect = 3e-08 Identities = 175/224 (78%) Strand = Plus / Minus Query: 292 ttcaccttcggcgcccacccggcgatcaggttcttcttggtcggnttggtcttgacgaac 351 |||||||| |||||||| || || |||| || || || || || || |||||||| || Sbjct: 728 ttcaccttgggcgcccatcccgcaatcacgtgctcctcggatggcttagtcttgacaaaa 669 Query: 352 gactnacggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagggacc 411 || | ||||||||| ||||||| |||||| || |||||| |||| | |||| |||| | Sbjct: 668 gattcacggctgaaaagagccttggtgtaggcgtggacgttggttaggttttctgggatc 609 Query: 412 ttncagcctttgaagtgctncagggcaacctggaggtggaagagcttcggagccaagctg 471 || ||||||||||| |||| ||| || | ||| |||||||| ||||| || ||| ||| Sbjct: 608 ttccagcctttgaaatgctccagtgcgatctgtaggtggaaaagctttggccccaggcta 549 Query: 472 agatccncggcggagacgttcgccccgttgatgtagggtccatg 515 ||||| | || || |||||| |||| || |||||||| ||||| Sbjct: 548 agatcagctgctgacacgttctccccatttatgtaggggccatg 505
>gb|AY074786.1| Oryza sativa dehydroascorbate reductase (DHAR) mRNA, complete cds Length = 1067 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/101 (81%) Strand = Plus / Minus Query: 358 cggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagggaccttncag 417 ||||| || |||||||| ||||||||||| || |||| | ||| |||| ||| ||| Sbjct: 648 cggctaaacagagcctctgtgtaagcatgaacattggttaggtcttccgggatcttccag 589 Query: 418 cctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 588 cctttgaaatgctccagagcaacctggagatggtagagctt 548
>dbj|AK070895.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023074C02, full insert sequence Length = 1198 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/101 (81%) Strand = Plus / Minus Query: 358 cggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagggaccttncag 417 ||||| || |||||||| ||||||||||| || |||| | ||| |||| ||| ||| Sbjct: 649 cggctaaacagagcctctgtgtaagcatgaacattggttaggtcttccgggatcttccag 590 Query: 418 cctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 589 cctttgaaatgctccagagcaacctggagatggtagagctt 549
>dbj|AK061836.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-040-D08, full insert sequence Length = 1053 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/101 (81%) Strand = Plus / Minus Query: 358 cggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagggaccttncag 417 ||||| || |||||||| ||||||||||| || |||| | ||| |||| ||| ||| Sbjct: 653 cggctaaacagagcctctgtgtaagcatgaacattggttaggtcttccgggatcttccag 594 Query: 418 cctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 593 cctttgaaatgctccagagcaacctggagatggtagagctt 553
>dbj|AB037970.1| Oryza sativa (japonica cultivar-group) DHAR1 mRNA for GSH-dependent dehydroascorbate reductase 1, complete cds Length = 1044 Score = 56.0 bits (28), Expect = 1e-04 Identities = 82/101 (81%) Strand = Plus / Minus Query: 358 cggctgaagagagcctcggtgtaagcatggacgctggtcantgtttcagggaccttncag 417 ||||| || |||||||| ||||||||||| || |||| | ||| |||| ||| ||| Sbjct: 618 cggctaaacagagcctctgtgtaagcatgaacattggttaggtcttccgggatcttccag 559 Query: 418 cctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 558 cctttgaaatgctccagagcaacctggagatggtagagctt 518
>gb|AC078977.6| Oryza sativa (japonica cultivar-group) chromosome 5 clone P0496H07, complete sequence Length = 164477 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/53 (86%) Strand = Plus / Plus Query: 406 gggaccttncagcctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||| ||| ||||||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 50721 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 50773
>gb|AC108504.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1654_B10, complete sequence Length = 140282 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/53 (86%) Strand = Plus / Plus Query: 406 gggaccttncagcctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||| ||| ||||||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 118740 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 118792
>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete sequence Length = 29737217 Score = 54.0 bits (27), Expect = 5e-04 Identities = 46/53 (86%) Strand = Plus / Plus Query: 406 gggaccttncagcctttgaagtgctncagggcaacctggaggtggaagagctt 458 |||| ||| ||||||||||| |||| ||| ||||||||||| ||| ||||||| Sbjct: 846298 gggatcttccagcctttgaaatgctccagagcaacctggagatggtagagctt 846350
>gb|AC109221.32| Mus musculus chromosome 7, clone RP23-207N2, complete sequence Length = 195657 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 98 agccaggcagggggcagacag 118 ||||||||||||||||||||| Sbjct: 71257 agccaggcagggggcagacag 71277
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 42.1 bits (21), Expect = 1.8 Identities = 21/21 (100%) Strand = Plus / Plus Query: 287 acgggttcaccttcggcgccc 307 ||||||||||||||||||||| Sbjct: 209716 acgggttcaccttcggcgccc 209736
>gb|AC168056.3| Mus musculus BAC clone RP24-189B1 from chromosome 13, complete sequence Length = 179458 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 440 cctggaggtggaagagcttc 459 |||||||||||||||||||| Sbjct: 51516 cctggaggtggaagagcttc 51497
>emb|AJ632303.1| Sus scrofa partial ICAM3 gene, TYK2, CDC37, PDE4A, KEAP1, EDG8 and APG4D genes and partial FLJ12949 gene Length = 185331 Score = 40.1 bits (20), Expect = 7.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 144 acaggcagagcacacagccgaggc 167 |||||| ||||||||||||||||| Sbjct: 176008 acaggctgagcacacagccgaggc 176031
>emb|BX088727.14| Zebrafish DNA sequence from clone DKEY-218A22 in linkage group 2, complete sequence Length = 185178 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 171 ctcgcattattccaaaccca 190 |||||||||||||||||||| Sbjct: 28852 ctcgcattattccaaaccca 28833
>emb|Z84494.1|HSLUCA7 Human DNA sequence from clone XXcos-7 on chromosome 3, complete sequence Length = 16950 Score = 40.1 bits (20), Expect = 7.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 98 agccaggcagggggcagaca 117 |||||||||||||||||||| Sbjct: 12882 agccaggcagggggcagaca 12863 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,251,543 Number of Sequences: 3902068 Number of extensions: 2251543 Number of successful extensions: 37141 Number of sequences better than 10.0: 18 Number of HSP's better than 10.0 without gapping: 18 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 37055 Number of HSP's gapped (non-prelim): 86 length of query: 525 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 502 effective length of database: 17,143,297,704 effective search space: 8605935447408 effective search space used: 8605935447408 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
