ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l22
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|NM_187458.1| Oryza sativa (japonica cultivar-group), predic... 109 1e-20
2gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 109 1e-20
3gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome... 109 1e-20
4dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 109 1e-20
5dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clon... 109 1e-20
6gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete ge... 44 0.56
7gb|AY105790.1| Zea mays PCO079761 mRNA sequence 44 0.56
8ref|XM_705696.1| Candida albicans SC5314 hypothetical protein (C... 42 2.2
9ref|XM_705683.1| Candida albicans SC5314 hypothetical protein (C... 42 2.2
10emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 o... 42 2.2
11gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, compl... 42 2.2
12gb|AE015451.1| Pseudomonas putida KT2440 complete genome 42 2.2
13gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome 40 8.7
14gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
15gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
16gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, comple... 40 8.7
17gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosom... 40 8.7
18gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, compl... 40 8.7
19gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, com... 40 8.7
20ref|XM_674112.1| Plasmodium berghei strain ANKA hypothetical pro... 40 8.7
21gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2)... 40 8.7
22gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds 40 8.7
23emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4,... 40 8.7
24gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clo... 40 8.7
25gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, com... 40 8.7
26gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, com... 40 8.7
27gb|AF342813.1|AF342813 Didelphis virginiana mannose-6-phosphate/... 40 8.7
28dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-l... 40 8.7
29dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full... 40 8.7
30emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in... 40 8.7
31dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
32dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 40 8.7
33ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA 40 8.7
34gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Ca... 40 8.7
35dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome 40 8.7
36gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9... 40 8.7
37gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J... 40 8.7
38emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 i... 40 8.7
39gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 40 8.7
40emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chr... 40 8.7 
>ref|NM_187458.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 975

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                       
Query: 378 gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 437
           |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 817 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 758

                                                                       
Query: 438 tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 497
           |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 757 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 698

                                                  
Query: 498 acctccgccttctgtaactgtatggggatcttgaacggt 536
           |||||   |||||||||| |||||| |||||||||||||
Sbjct: 697 acctctctcttctgtaacggtatggagatcttgaacggt 659



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                       
Query: 220 tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 279
           |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 969 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 910

                       
Query: 280 agaacgcctctt 291
           |||| |||||||
Sbjct: 909 agaatgcctctt 898
to top
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 378     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 437
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8740278 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8740337

                                                                           
Query: 438     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 497
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8740338 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8740397

                                                      
Query: 498     acctccgccttctgtaactgtatggggatcttgaacggt 536
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8740398 acctctctcttctgtaacggtatggagatcttgaacggt 8740436



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 220     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 279
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8740126 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8740185

                           
Query: 280     agaacgcctctt 291
               |||| |||||||
Sbjct: 8740186 agaatgcctctt 8740197
to top
>gb|AC135205.4| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1012B02,
             complete sequence
          Length = 115270

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                         
Query: 378   gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 437
             |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 83929 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 83988

                                                                         
Query: 438   tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 497
             |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 83989 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 84048

                                                    
Query: 498   acctccgccttctgtaactgtatggggatcttgaacggt 536
             |||||   |||||||||| |||||| |||||||||||||
Sbjct: 84049 acctctctcttctgtaacggtatggagatcttgaacggt 84087



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                         
Query: 220   tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 279
             |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 83777 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 83836

                         
Query: 280   agaacgcctctt 291
             |||| |||||||
Sbjct: 83837 agaatgcctctt 83848
to top
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
               sequence
          Length = 36192742

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Plus

                                                                           
Query: 378     gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 437
               |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 8738113 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 8738172

                                                                           
Query: 438     tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 497
               |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 8738173 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 8738232

                                                      
Query: 498     acctccgccttctgtaactgtatggggatcttgaacggt 536
               |||||   |||||||||| |||||| |||||||||||||
Sbjct: 8738233 acctctctcttctgtaacggtatggagatcttgaacggt 8738271



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Plus

                                                                           
Query: 220     tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 279
               |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 8737961 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 8738020

                           
Query: 280     agaacgcctctt 291
               |||| |||||||
Sbjct: 8738021 agaatgcctctt 8738032
to top
>dbj|AK065578.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013026M08, full
            insert sequence
          Length = 1438

 Score =  109 bits (55), Expect = 1e-20
 Identities = 133/159 (83%)
 Strand = Plus / Minus

                                                                        
Query: 378  gggagcagctacgggagtagctcctgcgtggtgatacgctgcgagagtaactccgtcttc 437
            |||| |||||| |||||||||||||  | |||||||| |||||||| || ||||||| ||
Sbjct: 1076 gggaacagctatgggagtagctcctctgaggtgatacactgcgagaatagctccgtcctc 1017

                                                                        
Query: 438  tgttccttggagaatagcgcctgctgtagtatgctgaaacataacggtcatgggagcatg 497
            |    ||||||||||||| ||| || ||||||| ||||||| || |||||| ||| ||||
Sbjct: 1016 tagcacttggagaatagcaccttctatagtatggtgaaacagaatggtcataggaacatg 957

                                                   
Query: 498  acctccgccttctgtaactgtatggggatcttgaacggt 536
            |||||   |||||||||| |||||| |||||||||||||
Sbjct: 956  acctctctcttctgtaacggtatggagatcttgaacggt 918



 Score = 63.9 bits (32), Expect = 6e-07
 Identities = 62/72 (86%)
 Strand = Plus / Minus

                                                                        
Query: 220  tgagcgctccctggagacggacctcgagcatgaactgcggctgtgcgcatagctttctct 279
            |||||||||||||||||| ||||| ||| | |||||||||||||| |  ||||| || ||
Sbjct: 1228 tgagcgctccctggagacagaccttgagtaggaactgcggctgtgagagtagctctccct 1169

                        
Query: 280  agaacgcctctt 291
            |||| |||||||
Sbjct: 1168 agaatgcctctt 1157
to top
>gb|CP000285.1| Chromohalobacter salexigens DSM 3043, complete genome
          Length = 3696649

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                        
Query: 302    ggtgacctgctgcgcgatgccttgct 327
              ||||||||| ||||||||||||||||
Sbjct: 352154 ggtgacctggtgcgcgatgccttgct 352179
to top
>gb|AY105790.1| Zea mays PCO079761 mRNA sequence
          Length = 1402

 Score = 44.1 bits (22), Expect = 0.56
 Identities = 37/42 (88%)
 Strand = Plus / Minus

                                                      
Query: 220  tgagcgctccctggagacggacctcgagcatgaactgcggct 261
            ||||||||||||||| || ||||| ||| | |||||||||||
Sbjct: 1260 tgagcgctccctggacacagacctggagtacgaactgcggct 1219
to top
>ref|XM_705696.1| Candida albicans SC5314 hypothetical protein (CaO19.3758), mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 99   aagatgttaacgatgacgaaataca 123
            |||||||||||||||| ||||||||
Sbjct: 1166 aagatgttaacgatgaagaaataca 1190
to top
>ref|XM_705683.1| Candida albicans SC5314 hypothetical protein (CaO19.11242), mRNA
          Length = 1428

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 99   aagatgttaacgatgacgaaataca 123
            |||||||||||||||| ||||||||
Sbjct: 1166 aagatgttaacgatgaagaaataca 1190
to top
>emb|AL022576.2|HS20J23 Human DNA sequence from clone RP1-20J23 on chromosome Xq26.2-27.2
             Contains a ras-related C3 botulinum toxin substrate 1 (rho
             family, small GTP binding protein Rac1) (RAC1) pseudogene
             (LOC286472) and a CpG island, complete sequence
          Length = 137111

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 86    cagactgcaatttaagatgtt 106
             |||||||||||||||||||||
Sbjct: 99923 cagactgcaatttaagatgtt 99903
to top
>gb|AC105748.2| Homo sapiens chromosome 3 clone RP11-532I6, complete sequence
          Length = 162258

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 350    gaacagctccttgattcttct 370
              |||||||||||||||||||||
Sbjct: 102961 gaacagctccttgattcttct 102941
to top
>gb|AE015451.1| Pseudomonas putida KT2440 complete genome
          Length = 6181863

 Score = 42.1 bits (21), Expect = 2.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 203     caggtgcttgatgaggttgag 223
               |||||||||||||||||||||
Sbjct: 1782657 caggtgcttgatgaggttgag 1782677
to top
>gb|CP000096.1| Pelodictyon luteolum DSM 273, complete genome
          Length = 2364842

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 601    gggagactccgacctgtcgg 620
              ||||||||||||||||||||
Sbjct: 754241 gggagactccgacctgtcgg 754222
to top
>gb|AC134053.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBb0005H02, complete sequence
          Length = 144882

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 56    tttctgcatttttctcctat 75
             ||||||||||||||||||||
Sbjct: 13390 tttctgcatttttctcctat 13371
to top
>gb|AC108224.6| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0038F07,
              complete sequence
          Length = 175703

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 56     tttctgcatttttctcctat 75
              ||||||||||||||||||||
Sbjct: 157289 tttctgcatttttctcctat 157270
to top
>gb|CP000117.1| Anabaena variabilis ATCC 29413 chromosome, complete sequence
          Length = 6365727

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 54      attttctgcatttttctcct 73
               ||||||||||||||||||||
Sbjct: 5561837 attttctgcatttttctcct 5561818
to top
>gb|AC124552.3| Mus musculus BAC clone RP23-222M11 from chromosome 19, complete
             sequence
          Length = 237281

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 425   taactccgtcttctgttcct 444
             ||||||||||||||||||||
Sbjct: 94059 taactccgtcttctgttcct 94040
to top
>gb|AC122850.4| Mus musculus BAC clone RP23-167J19 from 10, complete sequence
          Length = 234973

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 37     taggcaatctgtaggaaattttct 60
              ||||||||||||| ||||||||||
Sbjct: 176074 taggcaatctgtaagaaattttct 176051
to top
>gb|AC107736.10| Mus musculus chromosome 7, clone RP23-354B2, complete sequence
          Length = 272413

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 50     ggaaattttctgcatttttc 69
              ||||||||||||||||||||
Sbjct: 137912 ggaaattttctgcatttttc 137893
to top
>ref|XM_674112.1| Plasmodium berghei strain ANKA hypothetical protein (PB000589.00.0)
            partial mRNA
          Length = 3570

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 52   aaattttctgcatttttctc 71
            ||||||||||||||||||||
Sbjct: 2210 aaattttctgcatttttctc 2191
to top
>gb|DQ153984.1| Gossypium arboreum auxin response factor 2 (ARF2) mRNA, complete cds
          Length = 3723

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 327  tttcagcatatcctttctgc 346
            ||||||||||||||||||||
Sbjct: 3500 tttcagcatatcctttctgc 3519
to top
>gb|BC053925.1| Mus musculus cDNA clone IMAGE:6311688, partial cds
          Length = 3894

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  taactccgtcttctgttcct 444
            ||||||||||||||||||||
Sbjct: 1627 taactccgtcttctgttcct 1608
to top
>emb|AL731601.3|OSJN00245 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0044M19,
             complete sequence
          Length = 188317

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 168   aacatccaaagtcatcaaggcact 191
             |||||| |||||||||||||||||
Sbjct: 55797 aacatcaaaagtcatcaaggcact 55774
to top
>gb|BC068307.1| Mus musculus lysyl oxidase-like 4, mRNA (cDNA clone MGC:76593
            IMAGE:30059745), complete cds
          Length = 3683

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  taactccgtcttctgttcct 444
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
to top
>gb|AC105224.8| Homo sapiens chromosome 18, clone RP11-689E3, complete sequence
          Length = 199051

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 54     attttctgcatttttctcct 73
              ||||||||||||||||||||
Sbjct: 127187 attttctgcatttttctcct 127206
to top
>gb|AC073175.4| Homo sapiens chromosome 05 clone RP11-319P13, complete sequence
          Length = 173707

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   gaaatacagctgcttcacta 135
             ||||||||||||||||||||
Sbjct: 84899 gaaatacagctgcttcacta 84918
to top
>gb|AF342813.1|AF342813 Didelphis virginiana mannose-6-phosphate/insulin-like growth factor
            II receptor (m6p/igf2r) mRNA, complete cds
          Length = 8916

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 25   atccttgtggaataggcaat 44
            ||||||||||||||||||||
Sbjct: 2708 atccttgtggaataggcaat 2689
to top
>dbj|AK078840.1| Mus musculus adult male colon cDNA, RIKEN full-length enriched
           library, clone:9030013K10 product:hypothetical protein,
           full insert sequence
          Length = 2172

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 taactccgtcttctgttcct 444
           ||||||||||||||||||||
Sbjct: 23  taactccgtcttctgttcct 4
to top
>dbj|AK014773.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
           library, clone:4833426I20 product:lysyl oxidase-like 4,
           full insert sequence
          Length = 1427

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 425 taactccgtcttctgttcct 444
           ||||||||||||||||||||
Sbjct: 987 taactccgtcttctgttcct 968
to top
>emb|BX649257.8| Zebrafish DNA sequence from clone CH211-197L9 in linkage group 23,
            complete sequence
          Length = 182686

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 48   taggaaattttctgcatttt 67
            ||||||||||||||||||||
Sbjct: 7829 taggaaattttctgcatttt 7810
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 168      aacatccaaagtcatcaaggcact 191
                |||||| |||||||||||||||||
Sbjct: 18963873 aacatcaaaagtcatcaaggcact 18963850
to top
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       tttctgcatttttctcctat 75
                ||||||||||||||||||||
Sbjct: 19438738 tttctgcatttttctcctat 19438719
to top
>ref|NM_053083.2| Mus musculus lysyl oxidase-like 4 (Loxl4), mRNA
          Length = 3683

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 425  taactccgtcttctgttcct 444
            ||||||||||||||||||||
Sbjct: 3226 taactccgtcttctgttcct 3207
to top
>gb|AC006927.27| Homo sapiens 12 BAC RP11-444J21 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 114701

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 27    ccttgtggaataggcaatct 46
             ||||||||||||||||||||
Sbjct: 65197 ccttgtggaataggcaatct 65178
to top
>dbj|BA000019.2| Nostoc sp. PCC 7120 DNA, complete genome
          Length = 6413771

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 54     attttctgcatttttctcct 73
              ||||||||||||||||||||
Sbjct: 959560 attttctgcatttttctcct 959541
to top
>gb|AC010227.5|AC010227 Homo sapiens chromosome 5 clone CTC-289C9, complete sequence
          Length = 106320

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 116   gaaatacagctgcttcacta 135
             ||||||||||||||||||||
Sbjct: 51495 gaaatacagctgcttcacta 51514
to top
>gb|AC008893.4|AC008893 Homo sapiens chromosome 5 clone CTD-2228J24, complete sequence
          Length = 94995

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 116   gaaatacagctgcttcacta 135
             ||||||||||||||||||||
Sbjct: 27107 gaaatacagctgcttcacta 27088
to top
>emb|BX640495.10| Zebrafish DNA sequence from clone CH211-107H7 in linkage group 20,
             complete sequence
          Length = 73842

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 48    taggaaattttctgcatttt 67
             ||||||||||||||||||||
Sbjct: 18857 taggaaattttctgcatttt 18876
to top
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 56       tttctgcatttttctcctat 75
                ||||||||||||||||||||
Sbjct: 19598287 tttctgcatttttctcctat 19598268
to top
>emb|AL672266.9| Mouse DNA sequence from clone RP23-342A10 on chromosome X, complete
              sequence
          Length = 216754

 Score = 40.1 bits (20), Expect = 8.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 323    ttgctttcagcatatcctttctgc 346
              |||||||||||||||||| |||||
Sbjct: 156247 ttgctttcagcatatcctctctgc 156224


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 4,417,316
Number of Sequences: 3902068
Number of extensions: 4417316
Number of successful extensions: 82464
Number of sequences better than 10.0: 40
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 82158
Number of HSP's gapped (non-prelim): 301
length of query: 641
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 618
effective length of database: 17,143,297,704
effective search space: 10594557981072
effective search space used: 10594557981072
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top