ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l21
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1MRE11_RAT (Q9JIM0) Double-strand break repair protein MRE11A (MR... 33 0.73
2MRE11_XENLA (Q9W6K1) Double-strand break repair protein MRE11 32 0.96
3MRE11_MOUSE (Q61216) Double-strand break repair protein MRE11A (... 31 2.1
4MRE11_MACFA (Q60HE6) Double-strand break repair protein MRE11A (... 31 2.1
5ILVD_VIBCH (Q9KVW0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 31 2.1
6MRE11_HUMAN (P49959) Double-strand break repair protein MRE11A (... 31 2.1
7MSS1_SCHPO (Q9UTE7) GTPase mss1, mitochondrial precursor 31 2.8
8ILVD_XANCP (Q8PDJ3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 30 3.6
9ILVD_XANC8 (Q4UZT2) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 30 3.6
10ALP21_SCHPO (Q10303) Cell polarity protein alp21 (Altered polari... 30 3.6
11DAPB_METAC (Q8THP0) Dihydrodipicolinate reductase (EC 1.3.1.26) ... 30 4.8
12DAPB_METMA (Q8PXL6) Dihydrodipicolinate reductase (EC 1.3.1.26) ... 30 6.2
13ILVD_RHOS4 (Q3IXP4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD) 29 8.1

>MRE11_RAT (Q9JIM0) Double-strand break repair protein MRE11A (MRE11 homolog|
           1) (MRE11 meiotic recombination 11 homolog A)
          Length = 706

 Score = 32.7 bits (73), Expect = 0.73
 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = -1

Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195
           RP  D +S  +L   H+++   G  N + E      +DL +WG  +ECKI  +RN   LF
Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIGPTRNEQQLF 261

Query: 194 NQSR 183
             S+
Sbjct: 262 YVSQ 265



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>MRE11_XENLA (Q9W6K1) Double-strand break repair protein MRE11|
          Length = 711

 Score = 32.3 bits (72), Expect = 0.96
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 326 LHESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLFNQSR 183
           +H+++   G  N + E      LDL +WG  +ECKI  +RN   LF  S+
Sbjct: 217 IHQNRSKHGPTNYIPEQFLDEFLDLVIWGHEHECKIAPTRNEQQLFYVSQ 266



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>MRE11_MOUSE (Q61216) Double-strand break repair protein MRE11A (MRE11 homolog|
           1) (MRE11 meiotic recombination 11 homolog A) (MmMRE11A)
          Length = 706

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%)
 Frame = -1

Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKIS--RNAGMLF 195
           RP  D +S  +L   H+++   G  N + E      +DL +WG  +ECKI   +N   LF
Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGNTNFIPEQFLDDFIDLVIWGHEHECKIGPIKNEQQLF 261

Query: 194 NQSR 183
             S+
Sbjct: 262 YVSQ 265



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>MRE11_MACFA (Q60HE6) Double-strand break repair protein MRE11A (MRE11 homolog|
           1) (MRE11 meiotic recombination 11 homolog A)
          Length = 707

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -1

Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195
           RP  D +S  +L   H+++   G  N + E      +DL +WG  +ECKI  ++N   LF
Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLF 261



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>ILVD_VIBCH (Q9KVW0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 613

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 543 DDEWDTCDTDQQQGGVTDEAEPFMGSGRFA 454
           D  WDT D D+Q+G + D+A  F   G  A
Sbjct: 394 DCRWDTLDDDRQEGCIRDKAHAFSQDGGLA 423



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>MRE11_HUMAN (P49959) Double-strand break repair protein MRE11A (MRE11 homolog|
           1) (MRE11 meiotic recombination 11 homolog A)
          Length = 708

 Score = 31.2 bits (69), Expect = 2.1
 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%)
 Frame = -1

Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195
           RP  D +S  +L   H+++   G  N + E      +DL +WG  +ECKI  ++N   LF
Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLF 261



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>MSS1_SCHPO (Q9UTE7) GTPase mss1, mitochondrial precursor|
          Length = 496

 Score = 30.8 bits (68), Expect = 2.8
 Identities = 13/41 (31%), Positives = 22/41 (53%)
 Frame = -2

Query: 382 FSRSFDPSDLLQTFTPCARYTRASFWLAREIRCRKLYTTLY 260
           FS S   S++L+T   C R  +   +L  ++ C   YTT++
Sbjct: 335 FSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMF 375



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>ILVD_XANCP (Q8PDJ3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 612

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFARAY 445
           WDT DTD+ +G + D A  F   G  A  Y
Sbjct: 395 WDTLDTDRSEGCIRDVAHAFSQEGGLAVLY 424



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>ILVD_XANC8 (Q4UZT2) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 612

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 13/30 (43%), Positives = 16/30 (53%)
 Frame = -3

Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFARAY 445
           WDT DTD+ +G + D A  F   G  A  Y
Sbjct: 395 WDTLDTDRSEGCIRDVAHAFSQEGGLAVLY 424



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>ALP21_SCHPO (Q10303) Cell polarity protein alp21 (Altered polarity protein 21)|
           (Suppressor of tsm one protein 1)
          Length = 511

 Score = 30.4 bits (67), Expect = 3.6
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = -1

Query: 542 MTSGTLVILISSKAV*LMKQSHSWDLDDLHVLISWVTAVPTRRNLSTLCGS 390
           +T G  +  I+S A  L+K  ++W L D+  LIS+  A+P   +      S
Sbjct: 423 ITKGIKISSINSGATMLLKLHYNWKLLDIKALISYHFAIPVHTSTFVFASS 473



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>DAPB_METAC (Q8THP0) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 263

 Score = 30.0 bits (66), Expect = 4.8
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 528 TCDTDQQQGGVTDEAEPFMGSGRFARAYQLGYSCADEKELEYALR 394
           TC TD Q     D       +G FA    LG   +D K+LE  L+
Sbjct: 22  TCSTDMQLVAAFDIGSIGKDAGEFAHVSNLGIQISDVKDLETVLK 66



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>DAPB_METMA (Q8PXL6) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)|
          Length = 263

 Score = 29.6 bits (65), Expect = 6.2
 Identities = 16/45 (35%), Positives = 20/45 (44%)
 Frame = -3

Query: 528 TCDTDQQQGGVTDEAEPFMGSGRFARAYQLGYSCADEKELEYALR 394
           TC TD Q     D       +G FA    LG   +D K+LE  L+
Sbjct: 22  TCSTDMQLVAAFDIGNIGKDAGEFAHVGNLGIQISDVKDLETVLK 66



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>ILVD_RHOS4 (Q3IXP4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)|
          Length = 612

 Score = 29.3 bits (64), Expect = 8.1
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFA 454
           WDT DTD++ G +   A PF   G  A
Sbjct: 398 WDTLDTDRETGVIRSVATPFSKDGGLA 424


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,733,920
Number of Sequences: 219361
Number of extensions: 1614166
Number of successful extensions: 3504
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3438
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3504
length of database: 80,573,946
effective HSP length: 106
effective length of database: 57,321,680
effective search space used: 4700377760
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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