ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61l21 |
|---|---|
| Clone Library Name | barley_pub |
>MRE11_RAT (Q9JIM0) Double-strand break repair protein MRE11A (MRE11 homolog| 1) (MRE11 meiotic recombination 11 homolog A) Length = 706 Score = 32.7 bits (73), Expect = 0.73 Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 5/64 (7%) Frame = -1 Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195 RP D +S +L H+++ G N + E +DL +WG +ECKI +RN LF Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIGPTRNEQQLF 261 Query: 194 NQSR 183 S+ Sbjct: 262 YVSQ 265
>MRE11_XENLA (Q9W6K1) Double-strand break repair protein MRE11| Length = 711 Score = 32.3 bits (72), Expect = 0.96 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 2/50 (4%) Frame = -1 Query: 326 LHESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLFNQSR 183 +H+++ G N + E LDL +WG +ECKI +RN LF S+ Sbjct: 217 IHQNRSKHGPTNYIPEQFLDEFLDLVIWGHEHECKIAPTRNEQQLFYVSQ 266
>MRE11_MOUSE (Q61216) Double-strand break repair protein MRE11A (MRE11 homolog| 1) (MRE11 meiotic recombination 11 homolog A) (MmMRE11A) Length = 706 Score = 31.2 bits (69), Expect = 2.1 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 5/64 (7%) Frame = -1 Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKIS--RNAGMLF 195 RP D +S +L H+++ G N + E +DL +WG +ECKI +N LF Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGNTNFIPEQFLDDFIDLVIWGHEHECKIGPIKNEQQLF 261 Query: 194 NQSR 183 S+ Sbjct: 262 YVSQ 265
>MRE11_MACFA (Q60HE6) Double-strand break repair protein MRE11A (MRE11 homolog| 1) (MRE11 meiotic recombination 11 homolog A) Length = 707 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = -1 Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195 RP D +S +L H+++ G N + E +DL +WG +ECKI ++N LF Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLF 261
>ILVD_VIBCH (Q9KVW0) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 613 Score = 31.2 bits (69), Expect = 2.1 Identities = 13/30 (43%), Positives = 17/30 (56%) Frame = -3 Query: 543 DDEWDTCDTDQQQGGVTDEAEPFMGSGRFA 454 D WDT D D+Q+G + D+A F G A Sbjct: 394 DCRWDTLDDDRQEGCIRDKAHAFSQDGGLA 423
>MRE11_HUMAN (P49959) Double-strand break repair protein MRE11A (MRE11 homolog| 1) (MRE11 meiotic recombination 11 homolog A) Length = 708 Score = 31.2 bits (69), Expect = 2.1 Identities = 20/60 (33%), Positives = 31/60 (51%), Gaps = 5/60 (8%) Frame = -1 Query: 359 RPPSDLHSVCSL---HESKFLVGKGNKMQEALYYTLLDLDLWGCAYECKI--SRNAGMLF 195 RP D +S +L H+++ G N + E +DL +WG +ECKI ++N LF Sbjct: 202 RPKEDENSWFNLFVIHQNRSKHGSTNFIPEQFLDDFIDLVIWGHEHECKIAPTKNEQQLF 261
>MSS1_SCHPO (Q9UTE7) GTPase mss1, mitochondrial precursor| Length = 496 Score = 30.8 bits (68), Expect = 2.8 Identities = 13/41 (31%), Positives = 22/41 (53%) Frame = -2 Query: 382 FSRSFDPSDLLQTFTPCARYTRASFWLAREIRCRKLYTTLY 260 FS S S++L+T C R + +L ++ C YTT++ Sbjct: 335 FSESLKQSEILETIKDCLRQRKPIHFLINKVDCVSDYTTMF 375
>ILVD_XANCP (Q8PDJ3) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 612 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFARAY 445 WDT DTD+ +G + D A F G A Y Sbjct: 395 WDTLDTDRSEGCIRDVAHAFSQEGGLAVLY 424
>ILVD_XANC8 (Q4UZT2) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 612 Score = 30.4 bits (67), Expect = 3.6 Identities = 13/30 (43%), Positives = 16/30 (53%) Frame = -3 Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFARAY 445 WDT DTD+ +G + D A F G A Y Sbjct: 395 WDTLDTDRSEGCIRDVAHAFSQEGGLAVLY 424
>ALP21_SCHPO (Q10303) Cell polarity protein alp21 (Altered polarity protein 21)| (Suppressor of tsm one protein 1) Length = 511 Score = 30.4 bits (67), Expect = 3.6 Identities = 16/51 (31%), Positives = 26/51 (50%) Frame = -1 Query: 542 MTSGTLVILISSKAV*LMKQSHSWDLDDLHVLISWVTAVPTRRNLSTLCGS 390 +T G + I+S A L+K ++W L D+ LIS+ A+P + S Sbjct: 423 ITKGIKISSINSGATMLLKLHYNWKLLDIKALISYHFAIPVHTSTFVFASS 473
>DAPB_METAC (Q8THP0) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 263 Score = 30.0 bits (66), Expect = 4.8 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -3 Query: 528 TCDTDQQQGGVTDEAEPFMGSGRFARAYQLGYSCADEKELEYALR 394 TC TD Q D +G FA LG +D K+LE L+ Sbjct: 22 TCSTDMQLVAAFDIGSIGKDAGEFAHVSNLGIQISDVKDLETVLK 66
>DAPB_METMA (Q8PXL6) Dihydrodipicolinate reductase (EC 1.3.1.26) (DHPR)| Length = 263 Score = 29.6 bits (65), Expect = 6.2 Identities = 16/45 (35%), Positives = 20/45 (44%) Frame = -3 Query: 528 TCDTDQQQGGVTDEAEPFMGSGRFARAYQLGYSCADEKELEYALR 394 TC TD Q D +G FA LG +D K+LE L+ Sbjct: 22 TCSTDMQLVAAFDIGNIGKDAGEFAHVGNLGIQISDVKDLETVLK 66
>ILVD_RHOS4 (Q3IXP4) Dihydroxy-acid dehydratase (EC 4.2.1.9) (DAD)| Length = 612 Score = 29.3 bits (64), Expect = 8.1 Identities = 12/27 (44%), Positives = 15/27 (55%) Frame = -3 Query: 534 WDTCDTDQQQGGVTDEAEPFMGSGRFA 454 WDT DTD++ G + A PF G A Sbjct: 398 WDTLDTDRETGVIRSVATPFSKDGGLA 424 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 79,733,920 Number of Sequences: 219361 Number of extensions: 1614166 Number of successful extensions: 3504 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 3438 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3504 length of database: 80,573,946 effective HSP length: 106 effective length of database: 57,321,680 effective search space used: 4700377760 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
