Clone Name | rbah61l21 |
---|---|
Clone Library Name | barley_pub |
>dbj|AK103683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136F06, full insert sequence Length = 1269 Score = 137 bits (69), Expect = 4e-29 Identities = 123/141 (87%) Strand = Plus / Minus Query: 383 tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442 |||||||| |||| ||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 1183 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 1124 Query: 443 tgataagcacgtgcaaatcgtccagatcccatgaatggctctgcttcatcagtcacaccg 502 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| ||| Sbjct: 1123 tgatatgcgcgtgcaaatcgtccagaacccataaatggctctgcttcatcggtcatacca 1064 Query: 503 ccttgctgctgatcagtatca 523 |||| || ||||||||||| Sbjct: 1063 gcttgttgtagatcagtatca 1043 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atttcccttgccaaccaaaaacttg 315 ||||||||||| ||||||||||||| Sbjct: 1243 atttcccttgcaaaccaaaaacttg 1219
>dbj|AK059732.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G12, full insert sequence Length = 1393 Score = 137 bits (69), Expect = 4e-29 Identities = 123/141 (87%) Strand = Plus / Minus Query: 383 tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442 |||||||| |||| ||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 1202 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 1143 Query: 443 tgataagcacgtgcaaatcgtccagatcccatgaatggctctgcttcatcagtcacaccg 502 ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| ||| Sbjct: 1142 tgatatgcgcgtgcaaatcgtccagaacccataaatggctctgcttcatcggtcatacca 1083 Query: 503 ccttgctgctgatcagtatca 523 |||| || ||||||||||| Sbjct: 1082 gcttgttgtagatcagtatca 1062 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atttcccttgccaaccaaaaacttg 315 ||||||||||| ||||||||||||| Sbjct: 1262 atttcccttgcaaaccaaaaacttg 1238
>dbj|AK070881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065H01, full insert sequence Length = 1433 Score = 129 bits (65), Expect = 1e-26 Identities = 104/117 (88%) Strand = Plus / Minus Query: 407 tcaagttccttctcgtcggcacagctgtaacccaactgataagcacgtgcaaatcgtcca 466 |||||||||||||| || ||||||||||||||||||||||| || ||||||||||||||| Sbjct: 1052 tcaagttccttctcatcagcacagctgtaacccaactgatatgcgcgtgcaaatcgtcca 993 Query: 467 gatcccatgaatggctctgcttcatcagtcacaccgccttgctgctgatcagtatca 523 || ||||| ||||||||||||||||| |||| ||| |||| || ||||||||||| Sbjct: 992 gaacccataaatggctctgcttcatcggtcataccagcttgttgtagatcagtatca 936 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atttcccttgccaaccaaaaacttg 315 ||||||||||| ||||||||||||| Sbjct: 1136 atttcccttgcaaaccaaaaacttg 1112
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 383 tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442 |||||||| |||| ||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 29482965 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 29482906 Query: 443 tgataagcacgtgc 456 ||||| || ||||| Sbjct: 29482905 tgatatgcgcgtgc 29482892 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 456 caaatcgtccagatcccatgaatggctctgcttcatcagtca 497 ||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 29482370 caaatcgtccagaacccataaatggctctgcttcatcggtca 29482329 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atttcccttgccaaccaaaaacttg 315 ||||||||||| ||||||||||||| Sbjct: 29483025 atttcccttgcaaaccaaaaacttg 29483001 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccgggagaatatcagcagaa 393 |||||||||||||||||||| Sbjct: 5406857 ccgggagaatatcagcagaa 5406838
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0655A07 Length = 172473 Score = 75.8 bits (38), Expect = 1e-10 Identities = 65/74 (87%) Strand = Plus / Minus Query: 383 tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442 |||||||| |||| ||| || || |||||||||||||| || |||||||||||||||||| Sbjct: 47471 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 47412 Query: 443 tgataagcacgtgc 456 ||||| || ||||| Sbjct: 47411 tgatatgcgcgtgc 47398 Score = 60.0 bits (30), Expect = 8e-06 Identities = 39/42 (92%) Strand = Plus / Minus Query: 456 caaatcgtccagatcccatgaatggctctgcttcatcagtca 497 ||||||||||||| ||||| ||||||||||||||||| |||| Sbjct: 46876 caaatcgtccagaacccataaatggctctgcttcatcggtca 46835 Score = 42.1 bits (21), Expect = 1.9 Identities = 24/25 (96%) Strand = Plus / Minus Query: 291 atttcccttgccaaccaaaaacttg 315 ||||||||||| ||||||||||||| Sbjct: 47531 atttcccttgcaaaccaaaaacttg 47507
>gb|AY108475.1| Zea mays PCO085021 mRNA sequence Length = 749 Score = 63.9 bits (32), Expect = 5e-07 Identities = 32/32 (100%) Strand = Plus / Minus Query: 461 cgtccagatcccatgaatggctctgcttcatc 492 |||||||||||||||||||||||||||||||| Sbjct: 396 cgtccagatcccatgaatggctctgcttcatc 365
>gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O22 map 3p, complete sequence Length = 211012 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 80730 ggtctgaaggaggtctgaagga 80751
>gb|AC064874.4| Homo sapiens BAC clone RP11-680O16 from 2, complete sequence Length = 160655 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 112 gtcaagcatttattttattact 133 |||||||||||||||||||||| Sbjct: 6249 gtcaagcatttattttattact 6270
>gb|AC018505.4|AC018505 Homo sapiens chromosome 3 clone RP11-58I13 map 3p, complete sequence Length = 196044 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 133735 ggtctgaaggaggtctgaagga 133756
>gb|AC018831.4|AC018831 Homo sapiens chromosome 3 clone RP11-481B18 map 3p, complete sequence Length = 178548 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 162116 ggtctgaaggaggtctgaagga 162137
>gb|AC011599.8|AC011599 Homo sapiens 3 BAC RP11-606C6 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 209876 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Minus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 76150 ggtctgaaggaggtctgaagga 76129
>gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p, complete sequence Length = 229408 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 214432 ggtctgaaggaggtctgaagga 214453
>gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence Length = 184716 Score = 44.1 bits (22), Expect = 0.49 Identities = 22/22 (100%) Strand = Plus / Plus Query: 344 ggtctgaaggaggtctgaagga 365 |||||||||||||||||||||| Sbjct: 16347 ggtctgaaggaggtctgaagga 16368
>gb|BC054581.1| Danio rerio protein kinase, cGMP-dependent, type I, mRNA (cDNA clone MGC:63955 IMAGE:6791791), complete cds Length = 3107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 gaatatcagcagaaccgcaaa 400 ||||||||||||||||||||| Sbjct: 543 gaatatcagcagaaccgcaaa 563
>emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 in linkage group 13, complete sequence Length = 156627 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 gaatatcagcagaaccgcaaa 400 ||||||||||||||||||||| Sbjct: 154549 gaatatcagcagaaccgcaaa 154569
>emb|BX276091.6| Zebrafish DNA sequence from clone CH211-267P9 in linkage group 5, complete sequence Length = 134612 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Minus Query: 380 gaatatcagcagaaccgcaaa 400 ||||||||||||||||||||| Sbjct: 82094 gaatatcagcagaaccgcaaa 82074
>ref|NM_201030.1| Danio rerio protein kinase, cGMP-dependent, type I (prkg1), mRNA Length = 3107 Score = 42.1 bits (21), Expect = 1.9 Identities = 21/21 (100%) Strand = Plus / Plus Query: 380 gaatatcagcagaaccgcaaa 400 ||||||||||||||||||||| Sbjct: 543 gaatatcagcagaaccgcaaa 563
>gb|AC121155.2| Homo sapiens BAC clone RP11-469P13 from 4, complete sequence Length = 92400 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 caggacataaaaacctctca 562 |||||||||||||||||||| Sbjct: 27918 caggacataaaaacctctca 27937
>gb|AC005681.2| Homo sapiens BAC clone GS1-59G8 from 7, complete sequence Length = 129989 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 aagcatttattttattacta 134 |||||||||||||||||||| Sbjct: 75547 aagcatttattttattacta 75566
>emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 in linkage group 9, complete sequence Length = 115853 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 tttaggaaactatacaacaa 171 |||||||||||||||||||| Sbjct: 106193 tttaggaaactatacaacaa 106212
>gb|AC125257.4| Homo sapiens chromosome , clone RP11-229E13, complete sequence Length = 159726 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 84 atgggcactgttgtgaggat 103 |||||||||||||||||||| Sbjct: 114317 atgggcactgttgtgaggat 114298
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence Length = 212207 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Plus Query: 543 caggacataaaaacctctca 562 |||||||||||||||||||| Sbjct: 24517 caggacataaaaacctctca 24536
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0529B09 Length = 138188 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 374 ccgggagaatatcagcagaa 393 |||||||||||||||||||| Sbjct: 37791 ccgggagaatatcagcagaa 37772
>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence Length = 162075 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 340 tgaaggtctgaaggaggtct 359 |||||||||||||||||||| Sbjct: 61549 tgaaggtctgaaggaggtct 61530
>gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, complete sequence Length = 195405 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 144 tctcataatttaggaaacta 163 |||||||||||||||||||| Sbjct: 51219 tctcataatttaggaaacta 51200
>emb|AJ543399.1|THA543399 Trichoderma harzianum phyA gene for phytase Length = 1707 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 55 cttcagtgaataggttacag 74 |||||||||||||||||||| Sbjct: 962 cttcagtgaataggttacag 943
>gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, complete sequence Length = 139402 Score = 40.1 bits (20), Expect = 7.7 Identities = 20/20 (100%) Strand = Plus / Minus Query: 217 ctgattttgcattcataggc 236 |||||||||||||||||||| Sbjct: 32380 ctgattttgcattcataggc 32361 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 5,657,151 Number of Sequences: 3902068 Number of extensions: 5657151 Number of successful extensions: 101444 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 28 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 101307 Number of HSP's gapped (non-prelim): 137 length of query: 566 length of database: 17,233,045,268 effective HSP length: 23 effective length of query: 543 effective length of database: 17,143,297,704 effective search space: 9308810653272 effective search space used: 9308810653272 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)