ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l21
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK103683.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
2dbj|AK059732.1| Oryza sativa (japonica cultivar-group) cDNA clon... 137 4e-29
3dbj|AK070881.1| Oryza sativa (japonica cultivar-group) cDNA clon... 129 1e-26
4dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
5dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic D... 76 1e-10
6gb|AY108475.1| Zea mays PCO085021 mRNA sequence 64 5e-07
7gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O... 44 0.49
8gb|AC064874.4| Homo sapiens BAC clone RP11-680O16 from 2, comple... 44 0.49
9gb|AC018505.4|AC018505 Homo sapiens chromosome 3 clone RP11-58I1... 44 0.49
10gb|AC018831.4|AC018831 Homo sapiens chromosome 3 clone RP11-481B... 44 0.49
11gb|AC011599.8|AC011599 Homo sapiens 3 BAC RP11-606C6 (Roswell Pa... 44 0.49
12gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p... 44 0.49
13gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p... 44 0.49
14gb|BC054581.1| Danio rerio protein kinase, cGMP-dependent, type ... 42 1.9
15emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 i... 42 1.9
16emb|BX276091.6| Zebrafish DNA sequence from clone CH211-267P9 in... 42 1.9
17ref|NM_201030.1| Danio rerio protein kinase, cGMP-dependent, typ... 42 1.9
18gb|AC121155.2| Homo sapiens BAC clone RP11-469P13 from 4, comple... 40 7.7
19gb|AC005681.2| Homo sapiens BAC clone GS1-59G8 from 7, complete ... 40 7.7
20emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 i... 40 7.7
21gb|AC125257.4| Homo sapiens chromosome , clone RP11-229E13, comp... 40 7.7
22gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complet... 40 7.7
23dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic D... 40 7.7
24gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete se... 40 7.7
25gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, comple... 40 7.7
26emb|AJ543399.1|THA543399 Trichoderma harzianum phyA gene for phy... 40 7.7
27gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, comp... 40 7.7 
>dbj|AK103683.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033136F06, full
            insert sequence
          Length = 1269

 Score =  137 bits (69), Expect = 4e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                        
Query: 383  tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442
            |||||||| |||| ||| || || |||||||||||||| || ||||||||||||||||||
Sbjct: 1183 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 1124

                                                                        
Query: 443  tgataagcacgtgcaaatcgtccagatcccatgaatggctctgcttcatcagtcacaccg 502
            ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| ||| 
Sbjct: 1123 tgatatgcgcgtgcaaatcgtccagaacccataaatggctctgcttcatcggtcatacca 1064

                                 
Query: 503  ccttgctgctgatcagtatca 523
             |||| ||  |||||||||||
Sbjct: 1063 gcttgttgtagatcagtatca 1043



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 291  atttcccttgccaaccaaaaacttg 315
            ||||||||||| |||||||||||||
Sbjct: 1243 atttcccttgcaaaccaaaaacttg 1219
to top
>dbj|AK059732.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-201-G12, full
            insert sequence
          Length = 1393

 Score =  137 bits (69), Expect = 4e-29
 Identities = 123/141 (87%)
 Strand = Plus / Minus

                                                                        
Query: 383  tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442
            |||||||| |||| ||| || || |||||||||||||| || ||||||||||||||||||
Sbjct: 1202 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 1143

                                                                        
Query: 443  tgataagcacgtgcaaatcgtccagatcccatgaatggctctgcttcatcagtcacaccg 502
            ||||| || ||||||||||||||||| ||||| ||||||||||||||||| |||| ||| 
Sbjct: 1142 tgatatgcgcgtgcaaatcgtccagaacccataaatggctctgcttcatcggtcatacca 1083

                                 
Query: 503  ccttgctgctgatcagtatca 523
             |||| ||  |||||||||||
Sbjct: 1082 gcttgttgtagatcagtatca 1062



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 291  atttcccttgccaaccaaaaacttg 315
            ||||||||||| |||||||||||||
Sbjct: 1262 atttcccttgcaaaccaaaaacttg 1238
to top
>dbj|AK070881.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023065H01, full
            insert sequence
          Length = 1433

 Score =  129 bits (65), Expect = 1e-26
 Identities = 104/117 (88%)
 Strand = Plus / Minus

                                                                        
Query: 407  tcaagttccttctcgtcggcacagctgtaacccaactgataagcacgtgcaaatcgtcca 466
            |||||||||||||| || ||||||||||||||||||||||| || |||||||||||||||
Sbjct: 1052 tcaagttccttctcatcagcacagctgtaacccaactgatatgcgcgtgcaaatcgtcca 993

                                                                     
Query: 467  gatcccatgaatggctctgcttcatcagtcacaccgccttgctgctgatcagtatca 523
            || ||||| ||||||||||||||||| |||| |||  |||| ||  |||||||||||
Sbjct: 992  gaacccataaatggctctgcttcatcggtcataccagcttgttgtagatcagtatca 936



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 291  atttcccttgccaaccaaaaacttg 315
            ||||||||||| |||||||||||||
Sbjct: 1136 atttcccttgcaaaccaaaaacttg 1112
to top
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                            
Query: 383      tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442
                |||||||| |||| ||| || || |||||||||||||| || ||||||||||||||||||
Sbjct: 29482965 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 29482906

                              
Query: 443      tgataagcacgtgc 456
                ||||| || |||||
Sbjct: 29482905 tgatatgcgcgtgc 29482892



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                          
Query: 456      caaatcgtccagatcccatgaatggctctgcttcatcagtca 497
                ||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 29482370 caaatcgtccagaacccataaatggctctgcttcatcggtca 29482329



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                         
Query: 291      atttcccttgccaaccaaaaacttg 315
                ||||||||||| |||||||||||||
Sbjct: 29483025 atttcccttgcaaaccaaaaacttg 29483001



 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 374     ccgggagaatatcagcagaa 393
               ||||||||||||||||||||
Sbjct: 5406857 ccgggagaatatcagcagaa 5406838
to top
>dbj|AP003634.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0655A07
          Length = 172473

 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 65/74 (87%)
 Strand = Plus / Minus

                                                                         
Query: 383   tatcagcagaaccgcaaagcgtactcaagttccttctcgtcggcacagctgtaacccaac 442
             |||||||| |||| ||| || || |||||||||||||| || ||||||||||||||||||
Sbjct: 47471 tatcagcaaaacctcaaggcatattcaagttccttctcatcagcacagctgtaacccaac 47412

                           
Query: 443   tgataagcacgtgc 456
             ||||| || |||||
Sbjct: 47411 tgatatgcgcgtgc 47398



 Score = 60.0 bits (30), Expect = 8e-06
 Identities = 39/42 (92%)
 Strand = Plus / Minus

                                                       
Query: 456   caaatcgtccagatcccatgaatggctctgcttcatcagtca 497
             ||||||||||||| ||||| ||||||||||||||||| ||||
Sbjct: 46876 caaatcgtccagaacccataaatggctctgcttcatcggtca 46835



 Score = 42.1 bits (21), Expect = 1.9
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 291   atttcccttgccaaccaaaaacttg 315
             ||||||||||| |||||||||||||
Sbjct: 47531 atttcccttgcaaaccaaaaacttg 47507
to top
>gb|AY108475.1| Zea mays PCO085021 mRNA sequence
          Length = 749

 Score = 63.9 bits (32), Expect = 5e-07
 Identities = 32/32 (100%)
 Strand = Plus / Minus

                                           
Query: 461 cgtccagatcccatgaatggctctgcttcatc 492
           ||||||||||||||||||||||||||||||||
Sbjct: 396 cgtccagatcccatgaatggctctgcttcatc 365
to top
>gb|AC018843.4|AC018843 Homo sapiens chromosome 3 clone RP11-900O22 map 3p, complete sequence
          Length = 211012

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 344   ggtctgaaggaggtctgaagga 365
             ||||||||||||||||||||||
Sbjct: 80730 ggtctgaaggaggtctgaagga 80751
to top
>gb|AC064874.4| Homo sapiens BAC clone RP11-680O16 from 2, complete sequence
          Length = 160655

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                  
Query: 112  gtcaagcatttattttattact 133
            ||||||||||||||||||||||
Sbjct: 6249 gtcaagcatttattttattact 6270
to top
>gb|AC018505.4|AC018505 Homo sapiens chromosome 3 clone RP11-58I13 map 3p, complete sequence
          Length = 196044

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 344    ggtctgaaggaggtctgaagga 365
              ||||||||||||||||||||||
Sbjct: 133735 ggtctgaaggaggtctgaagga 133756
to top
>gb|AC018831.4|AC018831 Homo sapiens chromosome 3 clone RP11-481B18 map 3p, complete sequence
          Length = 178548

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 344    ggtctgaaggaggtctgaagga 365
              ||||||||||||||||||||||
Sbjct: 162116 ggtctgaaggaggtctgaagga 162137
to top
>gb|AC011599.8|AC011599 Homo sapiens 3 BAC RP11-606C6 (Roswell Park Cancer Institute Human BAC
             Library) complete sequence
          Length = 209876

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 344   ggtctgaaggaggtctgaagga 365
             ||||||||||||||||||||||
Sbjct: 76150 ggtctgaaggaggtctgaagga 76129
to top
>gb|AC069271.5| Homo sapiens chromosome 3 clone RP11-715I4 map 3p, complete sequence
          Length = 229408

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 344    ggtctgaaggaggtctgaagga 365
              ||||||||||||||||||||||
Sbjct: 214432 ggtctgaaggaggtctgaagga 214453
to top
>gb|AC018836.5| Homo sapiens chromosome 3 clone RP11-588P9 map 3p, complete sequence
          Length = 184716

 Score = 44.1 bits (22), Expect = 0.49
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 344   ggtctgaaggaggtctgaagga 365
             ||||||||||||||||||||||
Sbjct: 16347 ggtctgaaggaggtctgaagga 16368
to top
>gb|BC054581.1| Danio rerio protein kinase, cGMP-dependent, type I, mRNA (cDNA
           clone MGC:63955 IMAGE:6791791), complete cds
          Length = 3107

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 380 gaatatcagcagaaccgcaaa 400
           |||||||||||||||||||||
Sbjct: 543 gaatatcagcagaaccgcaaa 563
to top
>emb|BX294129.10| Zebrafish DNA sequence from clone DKEYP-34H12 in linkage group 13,
              complete sequence
          Length = 156627

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 380    gaatatcagcagaaccgcaaa 400
              |||||||||||||||||||||
Sbjct: 154549 gaatatcagcagaaccgcaaa 154569
to top
>emb|BX276091.6| Zebrafish DNA sequence from clone CH211-267P9 in linkage group 5,
             complete sequence
          Length = 134612

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 380   gaatatcagcagaaccgcaaa 400
             |||||||||||||||||||||
Sbjct: 82094 gaatatcagcagaaccgcaaa 82074
to top
>ref|NM_201030.1| Danio rerio protein kinase, cGMP-dependent, type I (prkg1), mRNA
          Length = 3107

 Score = 42.1 bits (21), Expect = 1.9
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 380 gaatatcagcagaaccgcaaa 400
           |||||||||||||||||||||
Sbjct: 543 gaatatcagcagaaccgcaaa 563
to top
>gb|AC121155.2| Homo sapiens BAC clone RP11-469P13 from 4, complete sequence
          Length = 92400

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   caggacataaaaacctctca 562
             ||||||||||||||||||||
Sbjct: 27918 caggacataaaaacctctca 27937
to top
>gb|AC005681.2| Homo sapiens BAC clone GS1-59G8 from 7, complete sequence
          Length = 129989

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 115   aagcatttattttattacta 134
             ||||||||||||||||||||
Sbjct: 75547 aagcatttattttattacta 75566
to top
>emb|BX927396.13| Zebrafish DNA sequence from clone DKEY-216H18 in linkage group 9,
              complete sequence
          Length = 115853

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 152    tttaggaaactatacaacaa 171
              ||||||||||||||||||||
Sbjct: 106193 tttaggaaactatacaacaa 106212
to top
>gb|AC125257.4| Homo sapiens chromosome , clone RP11-229E13, complete sequence
          Length = 159726

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 84     atgggcactgttgtgaggat 103
              ||||||||||||||||||||
Sbjct: 114317 atgggcactgttgtgaggat 114298
to top
>gb|AC093853.3| Homo sapiens BAC clone RP11-502M1 from 4, complete sequence
          Length = 212207

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 543   caggacataaaaacctctca 562
             ||||||||||||||||||||
Sbjct: 24517 caggacataaaaacctctca 24536
to top
>dbj|AP004754.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0529B09
          Length = 138188

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 374   ccgggagaatatcagcagaa 393
             ||||||||||||||||||||
Sbjct: 37791 ccgggagaatatcagcagaa 37772
to top
>gb|AC148600.2| Xenopus tropicalis clone CH216-62H10, complete sequence
          Length = 162075

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 340   tgaaggtctgaaggaggtct 359
             ||||||||||||||||||||
Sbjct: 61549 tgaaggtctgaaggaggtct 61530
to top
>gb|AC132287.3| Mus musculus BAC clone RP24-302M13 from 8, complete sequence
          Length = 195405

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 144   tctcataatttaggaaacta 163
             ||||||||||||||||||||
Sbjct: 51219 tctcataatttaggaaacta 51200
to top
>emb|AJ543399.1|THA543399 Trichoderma harzianum phyA gene for phytase
          Length = 1707

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 55  cttcagtgaataggttacag 74
           ||||||||||||||||||||
Sbjct: 962 cttcagtgaataggttacag 943
to top
>gb|AC026709.7| Homo sapiens chromosome 5 clone CTD-2084I18, complete sequence
          Length = 139402

 Score = 40.1 bits (20), Expect = 7.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 217   ctgattttgcattcataggc 236
             ||||||||||||||||||||
Sbjct: 32380 ctgattttgcattcataggc 32361


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,657,151
Number of Sequences: 3902068
Number of extensions: 5657151
Number of successful extensions: 101444
Number of sequences better than 10.0: 27
Number of HSP's better than 10.0 without gapping: 28
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 101307
Number of HSP's gapped (non-prelim): 137
length of query: 566
length of database: 17,233,045,268
effective HSP length: 23
effective length of query: 543
effective length of database: 17,143,297,704
effective search space: 9308810653272
effective search space used: 9308810653272
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top