ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name rbah61l19
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxid... 61 2e-09
2GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxid... 57 3e-08
3GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.... 53 4e-07
4YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5 34 0.18
5LLDD_PSEPK (Q88DT3) L-lactate dehydrogenase [cytochrome] (EC 1.1... 34 0.23
6HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1)... 33 0.30
7HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1)... 33 0.30
8DSX_DROME (P23023) Protein doublesex 32 0.67
9HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)... 32 0.88
10CUT_DROME (P10180) Homeobox protein cut 31 1.5
11PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2... 31 2.0
12PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (... 31 2.0
13PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2... 31 2.0
14HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)... 31 2.0
15KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in ch... 30 2.6
16SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucl... 30 2.6
17SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/gluco... 30 2.6
18LLDD_PSEAE (Q9HV37) L-lactate dehydrogenase [cytochrome] (EC 1.1... 30 3.3
19MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor 30 4.4
20PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Prot... 30 4.4
21FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related ... 30 4.4
22FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related ... 30 4.4
23LLDD_HAEDU (Q7VPI9) L-lactate dehydrogenase [cytochrome] (EC 1.1... 30 4.4
24DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH) 29 5.7
25CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium c... 29 5.7
26LLDD_ERWCT (Q6DAY3) L-lactate dehydrogenase [cytochrome] (EC 1.1... 29 5.7
27Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2... 29 7.5
28HRP_PLAFF (P04930) Small histidine-alanine-rich protein precurso... 29 7.5
29HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHR... 29 7.5
30CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25 29 7.5
31NODU_RHIFR (Q01990) Nodulation protein U (EC 2.1.3.-) 28 9.7
32NODU_RHISN (P31957) Nodulation protein U (EC 2.1.3.-) 28 9.7

>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC|
           1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain
           alpha-hydroxy acid oxidase 1)
          Length = 367

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 31/48 (64%), Positives = 37/48 (77%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 341
           AGV+ VL+M+R+EFELTMAL GC  LS+ITR HI TE D   R LPR+
Sbjct: 321 AGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367



to top

>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC|
           1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain
           alpha-hydroxy acid oxidase 2)
          Length = 367

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 341
           AGVR VL+M+R+EFELTMAL GC  L +I+R HI TE D   RP  R+
Sbjct: 321 AGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367



to top

>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)|
           (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy
           acid oxidase)
          Length = 369

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 24/39 (61%), Positives = 30/39 (76%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGD 368
           AGV+ VL+MMR+EFELTMAL GC  L +I+R HI  + D
Sbjct: 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359



to top

>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5|
          Length = 453

 Score = 34.3 bits (77), Expect = 0.18
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +2

Query: 71  NTIWCSRCEIWWKWRDVPVDKY 136
           N+ WC  C + W+WR +P D Y
Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433



to top

>LLDD_PSEPK (Q88DT3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)|
          Length = 381

 Score = 33.9 bits (76), Expect = 0.23
 Identities = 14/37 (37%), Positives = 23/37 (62%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 374
           AGV+N+L +  +E  + M L G   +S+ITR+ +  E
Sbjct: 342 AGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378



to top

>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate|
           oxidase) (GOX)
          Length = 370

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392
           GV++VL +++EEF L MAL GC  +  I +
Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357



to top

>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate|
           oxidase) (GOX)
          Length = 370

 Score = 33.5 bits (75), Expect = 0.30
 Identities = 14/30 (46%), Positives = 21/30 (70%)
 Frame = -1

Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392
           GV++VL +++EEF L MAL GC  +  I +
Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357



to top

>DSX_DROME (P23023) Protein doublesex|
          Length = 549

 Score = 32.3 bits (72), Expect = 0.67
 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 3/95 (3%)
 Frame = -3

Query: 470 RAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXX 300
           R   D   V A   A R  QAQ      H+H   PP  PAA  ++    H          
Sbjct: 74  RLTADRQRVMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAH 132

Query: 299 XXTAGHMHASQYPPQRNATHAIITANSISTTPSAP 195
              A H H   +    +  H    A + +  PSAP
Sbjct: 133 HVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167



to top

>HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)|
           ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain
           alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid
           oxidase)
          Length = 351

 Score = 32.0 bits (71), Expect = 0.88
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -1

Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392
           GV+ VL ++  EF  +MAL GC  +++I R
Sbjct: 314 GVKEVLNILTNEFHTSMALTGCRSVAEINR 343



to top

>CUT_DROME (P10180) Homeobox protein cut|
          Length = 2175

 Score = 31.2 bits (69), Expect = 1.5
 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 12/104 (11%)
 Frame = -3

Query: 473 ERAAHDAGGVRAHHGARRVHQAQ-----RHHPRTHLHR------GRPPRTPAAEDVIKSQ 327
           +  A DA    AHH  ++ HQ Q     +HH + HLH+       + P + +  +   + 
Sbjct: 653 KNGASDALSEDAHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASND 712

Query: 326 RHXXXXXXXXXTAGHMHASQYPPQRNATHAIIT-ANSISTTPSA 198
            H            H H   +P   +  H   T +NS S+TP+A
Sbjct: 713 HHHGHHL-------HGHGLLHPSSAHHLHHQTTESNSNSSTPTA 749



to top

>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 443

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
 Frame = -3

Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354
           AGG  A   HHG R  H    H     HP +H H+  PP  P
Sbjct: 203 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244



to top

>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
 Frame = -3

Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354
           AGG  A   HHG R  H    H     HP +H H+  PP  P
Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246



to top

>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous|
           system-specific octamer-binding transcription factor
           N-Oct-3) (Brain-specific homeobox/POU domain protein 2)
           (Brain-2) (Protein Brn-2)
          Length = 445

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%)
 Frame = -3

Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354
           AGG  A   HHG R  H    H     HP +H H+  PP  P
Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246



to top

>HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)|
           ((S)-2-hydroxy-acid oxidase, peroxisomal) (Medium chain
           alpha-hydroxy acid oxidase) (Medium-chain L-2-hydroxy
           acid oxidase)
          Length = 353

 Score = 30.8 bits (68), Expect = 2.0
 Identities = 13/33 (39%), Positives = 22/33 (66%)
 Frame = -1

Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITREHI 383
           GV+ VL +++EE    MAL GC  +++I+ + I
Sbjct: 316 GVKEVLDILKEELHTCMALSGCRSVAEISPDLI 348



to top

>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X|
          Length = 462

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 12/31 (38%), Positives = 13/31 (41%)
 Frame = -3

Query: 464 AHDAGGVRAHHGARRVHQAQRHHPRTHLHRG 372
           AHD G    HHG     +   HH   H H G
Sbjct: 89  AHDHGHAHDHHGHSHDEEEDHHHGHAHDHHG 119



to top

>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside|
           cotransporter)
          Length = 672

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 270
           N+S++ +RPRPD++  HL  D V  D+ +  ++  + +  G YW
Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291



to top

>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose|
           cotransporter 2) (Low affinity sodium-glucose
           cotransporter)
          Length = 670

 Score = 30.4 bits (67), Expect = 2.6
 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%)
 Frame = +1

Query: 142 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 270
           N+S+T ++PRPD++  HL  D V  D+ +  ++  + +  G YW
Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289



to top

>LLDD_PSEAE (Q9HV37) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)|
          Length = 381

 Score = 30.0 bits (66), Expect = 3.3
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 374
           AGVRN+L ++ +E  + M L G   + +I+ + +  E
Sbjct: 342 AGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378



to top

>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor|
          Length = 61

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 22/59 (37%), Positives = 30/59 (50%)
 Frame = +3

Query: 18  MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 194
           M N +S+  Y   Q D +    VVG KY GNG  C  T +   + +G  + AG  RLA+
Sbjct: 1   MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55



to top

>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty|
           acyltransferase 5)
          Length = 374

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +2

Query: 17  YDKYRIDECIRADPIGHGNTIWCSRCE 97
           YD     +C ++DP  HG  IWCS C+
Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135



to top

>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)|
           (Transcription factor BF-2) (Brain factor 2) (BF2)
           (HFK2)
          Length = 469

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 440 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 354
           A HG    H  Q HH   H H   PP  P
Sbjct: 35  ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63



to top

>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)|
           (Transcription factor BF-1) (Brain factor 1) (BF1)
           (HFK1)
          Length = 477

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 12/29 (41%), Positives = 12/29 (41%)
 Frame = -3

Query: 440 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 354
           A HG    H  Q HH   H H   PP  P
Sbjct: 35  ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63



to top

>LLDD_HAEDU (Q7VPI9) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)|
          Length = 381

 Score = 29.6 bits (65), Expect = 4.4
 Identities = 13/32 (40%), Positives = 20/32 (62%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITRE 389
           AGV N+L + R+E  + M L    ++SDI R+
Sbjct: 342 AGVENMLDIFRKEMHVAMTLTSNARISDINRD 373



to top

>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)|
          Length = 434

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
 Frame = +1

Query: 94  RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 267
           RN  E+ARRAGR + +     A RP P  DT    + AD + D+     I  V    GGY
Sbjct: 24  RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81

Query: 268 WLA 276
            LA
Sbjct: 82  TLA 84



to top

>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B|
            subunit (Voltage-gated calcium channel alpha subunit
            Cav2.2) (DOE-4)
          Length = 2326

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%)
 Frame = -3

Query: 482  RRAERAAHDAGGVRAHHGARRVHQA-QRHHPRTHLHRGRPPRTPAAEDVIKSQRH 321
            R+ ER+    GG R HH    +  A +R H R   HR    +     +  K +RH
Sbjct: 898  RKGERSRSHEGGRRHHHAQSSLDDAPEREHRRHRSHRHGTEQQHREANGTKGERH 952



to top

>LLDD_ERWCT (Q6DAY3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)|
          Length = 386

 Score = 29.3 bits (64), Expect = 5.7
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = -1

Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHI 383
           AGV N+L ++ +E  + M L G   ++DIT + +
Sbjct: 342 AGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSL 375



to top

>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c|
          Length = 341

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 211 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 312
           +D+  A ++   +  CGG  +A   P ++ DGDE
Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146



to top

>HRP_PLAFF (P04930) Small histidine-alanine-rich protein precursor (SHARP)|
           (Antigen 57)
          Length = 221

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
 Frame = -3

Query: 476 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 297
           A  A H A    AHH A   H A  HH     H         A     +  H        
Sbjct: 57  AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 114

Query: 296 XTAGHM----HASQYPPQRNATHA 237
             A H     HA+      NA HA
Sbjct: 115 ANAHHAANAHHAANAHHAANAHHA 138



to top

>HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHRP-III)|
          Length = 241

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%)
 Frame = -3

Query: 476 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 297
           A  A H A    AHH A   H A  HH     H         A     +  H        
Sbjct: 66  AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 123

Query: 296 XTAGHM----HASQYPPQRNATHA 237
             A H     HA+      NA HA
Sbjct: 124 ANAHHAANAHHAANAHHAANAHHA 147



to top

>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25|
          Length = 447

 Score = 28.9 bits (63), Expect = 7.5
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = -3

Query: 443 RAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAED 342
           R+ H     H++ RH  R+H HR R P +P   D
Sbjct: 195 RSRHEDEDAHRSHRH--RSHRHRSRSPLSPDRSD 226



to top

>NODU_RHIFR (Q01990) Nodulation protein U (EC 2.1.3.-)|
          Length = 581

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 324 THDALIAVSTHGRAYAC*PVSXATQRNARNNYSELYIYDAVSAKM 190
           THD  IAV   GR   C   +   +RN  + Y E+   DAV A +
Sbjct: 33  THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 74



to top

>NODU_RHISN (P31957) Nodulation protein U (EC 2.1.3.-)|
          Length = 558

 Score = 28.5 bits (62), Expect = 9.7
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = -2

Query: 324 THDALIAVSTHGRAYAC*PVSXATQRNARNNYSELYIYDAVSAKM 190
           THD  IAV   GR   C   +   +RN  + Y E+   DAV A +
Sbjct: 9   THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 50


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,450,065
Number of Sequences: 219361
Number of extensions: 1231549
Number of successful extensions: 4022
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 3739
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3963
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 3304846491
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top