ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | rbah61l19 |
|---|---|
| Clone Library Name | barley_pub |
>GOX1_ARATH (Q9LRS0) Probable peroxisomal (S)-2-hydroxy-acid oxidase 1 (EC| 1.1.3.15) (Glycolate oxidase 1) (GOX 1) (Short chain alpha-hydroxy acid oxidase 1) Length = 367 Score = 60.8 bits (146), Expect = 2e-09 Identities = 31/48 (64%), Positives = 37/48 (77%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 341 AGV+ VL+M+R+EFELTMAL GC LS+ITR HI TE D R LPR+ Sbjct: 321 AGVKKVLQMLRDEFELTMALSGCRSLSEITRNHIVTEWD-TPRHLPRL 367
>GOX2_ARATH (Q9LRR9) Probable peroxisomal (S)-2-hydroxy-acid oxidase 2 (EC| 1.1.3.15) (Glycolate oxidase 2) (GOX 2) (Short chain alpha-hydroxy acid oxidase 2) Length = 367 Score = 56.6 bits (135), Expect = 3e-08 Identities = 29/48 (60%), Positives = 35/48 (72%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGDRLGRPLPRM 341 AGVR VL+M+R+EFELTMAL GC L +I+R HI TE D RP R+ Sbjct: 321 AGVRKVLQMLRDEFELTMALSGCRSLKEISRNHITTEWD-TPRPSARL 367
>GOX_SPIOL (P05414) Peroxisomal (S)-2-hydroxy-acid oxidase (EC 1.1.3.15)| (Glycolate oxidase) (GOX) (Short chain alpha-hydroxy acid oxidase) Length = 369 Score = 53.1 bits (126), Expect = 4e-07 Identities = 24/39 (61%), Positives = 30/39 (76%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTEGD 368 AGV+ VL+MMR+EFELTMAL GC L +I+R HI + D Sbjct: 321 AGVKKVLQMMRDEFELTMALSGCRSLKEISRSHIAADWD 359
>YWZ5_CAEEL (Q11095) Hypothetical protein C02B8.5| Length = 453 Score = 34.3 bits (77), Expect = 0.18 Identities = 10/22 (45%), Positives = 14/22 (63%) Frame = +2 Query: 71 NTIWCSRCEIWWKWRDVPVDKY 136 N+ WC C + W+WR +P D Y Sbjct: 412 NSEWCGLCNLCWQWRKLPADYY 433
>LLDD_PSEPK (Q88DT3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 33.9 bits (76), Expect = 0.23 Identities = 14/37 (37%), Positives = 23/37 (62%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 374 AGV+N+L + +E + M L G +S+ITR+ + E Sbjct: 342 AGVKNLLELFEKEMRVAMVLTGAKSISEITRDSLVRE 378
>HAOX1_MOUSE (Q9WU19) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 33.5 bits (75), Expect = 0.30 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392 GV++VL +++EEF L MAL GC + I + Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
>HAOX1_HUMAN (Q9UJM8) Hydroxyacid oxidase 1 (EC 1.1.3.15) (HAOX1) (Glycolate| oxidase) (GOX) Length = 370 Score = 33.5 bits (75), Expect = 0.30 Identities = 14/30 (46%), Positives = 21/30 (70%) Frame = -1 Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392 GV++VL +++EEF L MAL GC + I + Sbjct: 328 GVQDVLEILKEEFRLAMALSGCQNVKVIDK 357
>DSX_DROME (P23023) Protein doublesex| Length = 549 Score = 32.3 bits (72), Expect = 0.67 Identities = 26/95 (27%), Positives = 33/95 (34%), Gaps = 3/95 (3%) Frame = -3 Query: 470 RAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXX---XXXX 300 R D V A A R QAQ H+H PP PAA ++ H Sbjct: 74 RLTADRQRVMALQTALRRAQAQDEQRALHMHEV-PPANPAATTLLSHHHHVAAPAHVHAH 132 Query: 299 XXTAGHMHASQYPPQRNATHAIITANSISTTPSAP 195 A H H + + H A + + PSAP Sbjct: 133 HVHAHHAHGGHHSHHGHVLHHQQAAAAAAAAPSAP 167
>HAOX2_HUMAN (Q9NYQ3) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Long chain alpha-hydroxy acid oxidase) (Long-chain L-2-hydroxy acid oxidase) Length = 351 Score = 32.0 bits (71), Expect = 0.88 Identities = 13/30 (43%), Positives = 20/30 (66%) Frame = -1 Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITR 392 GV+ VL ++ EF +MAL GC +++I R Sbjct: 314 GVKEVLNILTNEFHTSMALTGCRSVAEINR 343
>CUT_DROME (P10180) Homeobox protein cut| Length = 2175 Score = 31.2 bits (69), Expect = 1.5 Identities = 27/104 (25%), Positives = 43/104 (41%), Gaps = 12/104 (11%) Frame = -3 Query: 473 ERAAHDAGGVRAHHGARRVHQAQ-----RHHPRTHLHR------GRPPRTPAAEDVIKSQ 327 + A DA AHH ++ HQ Q +HH + HLH+ + P + + + + Sbjct: 653 KNGASDALSEDAHHQQQQHHQQQHQHQQQHHQQQHLHQQHHHHLQQQPNSGSNSNPASND 712 Query: 326 RHXXXXXXXXXTAGHMHASQYPPQRNATHAIIT-ANSISTTPSA 198 H H H +P + H T +NS S+TP+A Sbjct: 713 HHHGHHL-------HGHGLLHPSSAHHLHHQTTESNSNSSTPTA 749
>PO3F2_HUMAN (P20265) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 443 Score = 30.8 bits (68), Expect = 2.0 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354 AGG A HHG R H H HP +H H+ PP P Sbjct: 203 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 244
>PO3F2_RAT (P56222) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 2.0 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>PO3F2_MOUSE (P31360) POU domain, class 3, transcription factor 2 (Nervous| system-specific octamer-binding transcription factor N-Oct-3) (Brain-specific homeobox/POU domain protein 2) (Brain-2) (Protein Brn-2) Length = 445 Score = 30.8 bits (68), Expect = 2.0 Identities = 17/42 (40%), Positives = 19/42 (45%), Gaps = 8/42 (19%) Frame = -3 Query: 455 AGGVRA---HHGARRVHQAQRH-----HPRTHLHRGRPPRTP 354 AGG A HHG R H H HP +H H+ PP P Sbjct: 205 AGGQPAGLHHHGLRDAHDEPHHADHHPHPHSHPHQQPPPPPP 246
>HAOX2_MOUSE (Q9NYQ2) Hydroxyacid oxidase 2 (EC 1.1.3.15) (HAOX2)| ((S)-2-hydroxy-acid oxidase, peroxisomal) (Medium chain alpha-hydroxy acid oxidase) (Medium-chain L-2-hydroxy acid oxidase) Length = 353 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/33 (39%), Positives = 22/33 (66%) Frame = -1 Query: 481 GVRNVLRMMREEFELTMALGGCTKLSDITREHI 383 GV+ VL +++EE MAL GC +++I+ + I Sbjct: 316 GVKEVLDILKEELHTCMALSGCRSVAEISPDLI 348
>KE4L_CAEEL (Q9XTQ7) Hypothetical Ke4-like protein H13N06.5 in chromosome X| Length = 462 Score = 30.4 bits (67), Expect = 2.6 Identities = 12/31 (38%), Positives = 13/31 (41%) Frame = -3 Query: 464 AHDAGGVRAHHGARRVHQAQRHHPRTHLHRG 372 AHD G HHG + HH H H G Sbjct: 89 AHDHGHAHDHHGHSHDEEEDHHHGHAHDHHG 119
>SC5A2_RABIT (P26430) Sodium/nucleoside cotransporter (Na(+)/nucleoside| cotransporter) Length = 672 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 142 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 270 N+S++ +RPRPD++ HL D V D+ + ++ + + G YW Sbjct: 250 NISSSCYRPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 291
>SC5A2_MOUSE (Q923I7) Sodium/glucose cotransporter 2 (Na(+)/glucose| cotransporter 2) (Low affinity sodium-glucose cotransporter) Length = 670 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/44 (34%), Positives = 27/44 (61%), Gaps = 1/44 (2%) Frame = +1 Query: 142 NLSTTAHRPRPDTHG*HLGADGVV-DIEFAVIIACVALRCGGYW 270 N+S+T ++PRPD++ HL D V D+ + ++ + + G YW Sbjct: 248 NISSTCYQPRPDSY--HLLRDPVTGDLPWPALLLGLTIVSGWYW 289
>LLDD_PSEAE (Q9HV37) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 30.0 bits (66), Expect = 3.3 Identities = 12/37 (32%), Positives = 22/37 (59%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHIFTE 374 AGVRN+L ++ +E + M L G + +I+ + + E Sbjct: 342 AGVRNLLELIEKEMRVAMVLTGAKSIGEISADSLVRE 378
>MTCY_LEUME (P38577) Bacteriocin mesentericin Y105 precursor| Length = 61 Score = 29.6 bits (65), Expect = 4.4 Identities = 22/59 (37%), Positives = 30/59 (50%) Frame = +3 Query: 18 MINTESMSVYVRTQ*DMEIQYGVVGAKYGGNGETCRSTSTQKFIYYGSPSPAGHTRLAS 194 M N +S+ Y Q D + VVG KY GNG C T + + +G + AG RLA+ Sbjct: 1 MTNMKSVEAY--QQLDNQNLKKVVGGKYYGNGVHC--TKSGCSVNWGEAASAGIHRLAN 55
>PFA5_YEAST (Q03289) Palmitoyltransferase PFA5 (EC 2.3.1.-) (Protein fatty| acyltransferase 5) Length = 374 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/27 (44%), Positives = 16/27 (59%) Frame = +2 Query: 17 YDKYRIDECIRADPIGHGNTIWCSRCE 97 YD +C ++DP HG IWCS C+ Sbjct: 111 YDAVVPPKCYQSDP--HGYPIWCSECQ 135
>FOXGA_HUMAN (P55316) Forkhead box protein G1A (Forkhead-related protein FKHL2)| (Transcription factor BF-2) (Brain factor 2) (BF2) (HFK2) Length = 469 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -3 Query: 440 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 354 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>FOXGB_HUMAN (P55315) Forkhead box protein G1B (Forkhead-related protein FKHL1)| (Transcription factor BF-1) (Brain factor 1) (BF1) (HFK1) Length = 477 Score = 29.6 bits (65), Expect = 4.4 Identities = 12/29 (41%), Positives = 12/29 (41%) Frame = -3 Query: 440 AHHGARRVHQAQRHHPRTHLHRGRPPRTP 354 A HG H Q HH H H PP P Sbjct: 35 ASHGHHNSHHPQHHHHHHHHHHHPPPPAP 63
>LLDD_HAEDU (Q7VPI9) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 381 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/32 (40%), Positives = 20/32 (62%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITRE 389 AGV N+L + R+E + M L ++SDI R+ Sbjct: 342 AGVENMLDIFRKEMHVAMTLTSNARISDINRD 373
>DHOM_PSEAE (P29365) Homoserine dehydrogenase (EC 1.1.1.3) (HDH)| Length = 434 Score = 29.3 bits (64), Expect = 5.7 Identities = 25/63 (39%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 94 RNMVEMARRAGRQVRKNLSTTAHRPRP--DTHG*HLGADGVVDIEFAVIIACVALRCGGY 267 RN E+ARRAGR + + A RP P DT + AD + D+ I V GGY Sbjct: 24 RNAEEIARRAGRGI-EVAQIAARRPNPKCDTGATPITAD-IFDVACNPEIDVVVELIGGY 81 Query: 268 WLA 276 LA Sbjct: 82 TLA 84
>CAC1B_DISOM (P56698) Probable voltage-dependent N-type calcium channel alpha-1B| subunit (Voltage-gated calcium channel alpha subunit Cav2.2) (DOE-4) Length = 2326 Score = 29.3 bits (64), Expect = 5.7 Identities = 17/55 (30%), Positives = 24/55 (43%), Gaps = 1/55 (1%) Frame = -3 Query: 482 RRAERAAHDAGGVRAHHGARRVHQA-QRHHPRTHLHRGRPPRTPAAEDVIKSQRH 321 R+ ER+ GG R HH + A +R H R HR + + K +RH Sbjct: 898 RKGERSRSHEGGRRHHHAQSSLDDAPEREHRRHRSHRHGTEQQHREANGTKGERH 952
>LLDD_ERWCT (Q6DAY3) L-lactate dehydrogenase [cytochrome] (EC 1.1.2.3)| Length = 386 Score = 29.3 bits (64), Expect = 5.7 Identities = 12/34 (35%), Positives = 21/34 (61%) Frame = -1 Query: 484 AGVRNVLRMMREEFELTMALGGCTKLSDITREHI 383 AGV N+L ++ +E + M L G ++DIT + + Sbjct: 342 AGVVNLLNLIEKEMRVAMTLTGAKSIADITSDSL 375
>Y2059_STRMU (Q8DRZ4) Hypothetical UPF0324 membrane protein SMU.2059c| Length = 341 Score = 28.9 bits (63), Expect = 7.5 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 211 VDIEFAVIIACVALRCGGYWLACICPAVRRDGDE 312 +D+ A ++ + CGG +A P ++ DGDE Sbjct: 113 LDVNTATLVGVGSSICGGSAIAATAPVIQADGDE 146
>HRP_PLAFF (P04930) Small histidine-alanine-rich protein precursor (SHARP)| (Antigen 57) Length = 221 Score = 28.9 bits (63), Expect = 7.5 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%) Frame = -3 Query: 476 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 297 A A H A AHH A H A HH H A + H Sbjct: 57 AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 114 Query: 296 XTAGHM----HASQYPPQRNATHA 237 A H HA+ NA HA Sbjct: 115 ANAHHAANAHHAANAHHAANAHHA 138
>HRP2_PLAFA (P05228) Histidine-rich protein precursor (Clone PFHRP-III)| Length = 241 Score = 28.9 bits (63), Expect = 7.5 Identities = 23/84 (27%), Positives = 25/84 (29%), Gaps = 4/84 (4%) Frame = -3 Query: 476 AERAAHDAGGVRAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAEDVIKSQRHXXXXXXXX 297 A A H A AHH A H A HH H A + H Sbjct: 66 AHHAHHVADAHHAHHAANAHHAANAHHAANAHHAANAHHAANAHHA--ANAHHAANAHHA 123 Query: 296 XTAGHM----HASQYPPQRNATHA 237 A H HA+ NA HA Sbjct: 124 ANAHHAANAHHAANAHHAANAHHA 147
>CWC25_ASPFU (Q4X1D7) Pre-mRNA-splicing factor cwc25| Length = 447 Score = 28.9 bits (63), Expect = 7.5 Identities = 13/34 (38%), Positives = 18/34 (52%) Frame = -3 Query: 443 RAHHGARRVHQAQRHHPRTHLHRGRPPRTPAAED 342 R+ H H++ RH R+H HR R P +P D Sbjct: 195 RSRHEDEDAHRSHRH--RSHRHRSRSPLSPDRSD 226
>NODU_RHIFR (Q01990) Nodulation protein U (EC 2.1.3.-)| Length = 581 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -2 Query: 324 THDALIAVSTHGRAYAC*PVSXATQRNARNNYSELYIYDAVSAKM 190 THD IAV GR C + +RN + Y E+ DAV A + Sbjct: 33 THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 74
>NODU_RHISN (P31957) Nodulation protein U (EC 2.1.3.-)| Length = 558 Score = 28.5 bits (62), Expect = 9.7 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = -2 Query: 324 THDALIAVSTHGRAYAC*PVSXATQRNARNNYSELYIYDAVSAKM 190 THD IAV GR C + +RN + Y E+ DAV A + Sbjct: 9 THDGAIAVVEDGRLVFC---TEQEKRNNNSRYQEINNLDAVVAAL 50 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 65,450,065 Number of Sequences: 219361 Number of extensions: 1231549 Number of successful extensions: 4022 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 3739 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3963 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
