Clone Name | rbah61l19 |
---|---|
Clone Library Name | barley_pub |
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 32328144 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 32328085 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 32328084 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 32328025 Query: 481 cggc 484 |||| Sbjct: 32328024 cggc 32328021
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 61911 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 61852 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 61851 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 61792 Query: 481 cggc 484 |||| Sbjct: 61791 cggc 61788
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 32418654 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 32418595 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 32418594 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 32418535 Query: 481 cggc 484 |||| Sbjct: 32418534 cggc 32418531
>dbj|AK120304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013052N09, full insert sequence Length = 1526 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 1162 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1103 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 1102 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 1043 Query: 481 cggc 484 |||| Sbjct: 1042 cggc 1039
>dbj|AK098878.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013001E15, full insert sequence Length = 1522 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 1158 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1099 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 1098 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 1039 Query: 481 cggc 484 |||| Sbjct: 1038 cggc 1035
>dbj|AK061719.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-037-H12, full insert sequence Length = 1586 Score = 135 bits (68), Expect = 1e-28 Identities = 110/124 (88%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||||||| | |||||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 1222 cgaggcggtcggcgtcggtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1163 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| |||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | Sbjct: 1162 cgctgagcgccatggtgagctcgaactcctcccgcatcatccgcagcacgttcctcaccc 1103 Query: 481 cggc 484 |||| Sbjct: 1102 cggc 1099
>gb|AF022740.1|AF022740 Oryza sativa glycolate oxidase (GOX) mRNA, complete cds Length = 1473 Score = 103 bits (52), Expect = 5e-19 Identities = 106/124 (85%) Strand = Plus / Minus Query: 361 cgaggcggtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacc 420 ||||||| ||| | || ||| ||||||| |||||||||||||| |||| |||||| | Sbjct: 1128 cgaggcgttcggcgtccgtgtagatgtgggcgcgggtgatgtcggcgagcgaggtgcatc 1069 Query: 421 cgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgc 480 ||| || ||||||||||||||||||||||||||||||||| ||||||| ||||| ||| | Sbjct: 1068 cgctgaacgccatggtgagctcgaactcctcccgcatcatccgcagcaggttcctcaccc 1009 Query: 481 cggc 484 |||| Sbjct: 1008 cggc 1005
>gb|AY108197.1| Zea mays PCO065133 mRNA sequence Length = 1667 Score = 85.7 bits (43), Expect = 1e-13 Identities = 85/99 (85%) Strand = Plus / Minus Query: 374 ctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgagcgccat 433 |||||||| |||||| | ||||||||| ||| ||| |||||| |||| ||||||||| Sbjct: 1288 ctcggtgatgatgtgcttgcgggtgatttcggcgagggaggtgcagccgctgagcgccat 1229 Query: 434 ggtgagctcgaactcctcccgcatcatgcgcagcacgtt 472 ||||||||||||||| ||||||| ||||||||| ||||| Sbjct: 1228 ggtgagctcgaactcgtcccgcagcatgcgcaggacgtt 1190
>ref|XM_476669.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1439 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 1146 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1087 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 1086 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 1030
>ref|XM_506164.1| PREDICTED Oryza sativa (japonica cultivar-group), B1364A02.11-1 mRNA Length = 1501 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 1187 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1128 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 1127 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 1071
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 2833181 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 2833122 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 2833121 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 2833065
>dbj|AP006163.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:B1364A02 Length = 137933 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 136742 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 136683 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 136682 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 136626
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 3468 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 3409 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 3408 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 3352
>dbj|AK120929.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023036A14, full insert sequence Length = 1738 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 1445 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1386 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 1385 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 1329
>dbj|AK103933.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-013-E11, full insert sequence Length = 1439 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 1146 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1087 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 1086 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 1030
>dbj|AK062189.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-046-E08, full insert sequence Length = 1501 Score = 73.8 bits (37), Expect = 5e-10 Identities = 97/117 (82%) Strand = Plus / Minus Query: 368 gtcgccctcggtgaagatgtgttcgcgggtgatgtcgctgagcttggtgcacccgccgag 427 |||| ||||||||| || ||| | ||||||||||||| ||| |||||| |||| ||| Sbjct: 1187 gtcggcctcggtgatgacgtggttgcgggtgatgtcggcgagggaggtgcagccgctgag 1128 Query: 428 cgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttccgcacgccggc 484 ||||||||||||||||||||| || || | ||| ||||||||||||| || ||||| Sbjct: 1127 cgccatggtgagctcgaactcgtcgcggagcatctgcagcacgttccggactccggc 1071
>ref|XM_473942.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1104 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||||||| | ||| || || | ||| ||||||| ||| Sbjct: 1034 gtgcatccgctgagcgccatggtgagctccagctcgtcgcggagcatctgcagcaccttc 975 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 974 ctcacgccggc 964
>emb|AL606645.2|OSJN00079 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053K19, complete sequence Length = 187601 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||| ||| | ||| || | || ||| |||||| ||||| Sbjct: 63428 gtgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttc 63369 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 63368 ctcacgccggc 63358 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||||||| | ||| || || | ||| ||||||| ||| Sbjct: 59360 gtgcatccgctgagcgccatggtgagctccagctcgtcgcggagcatctgcagcaccttc 59301 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 59300 ctcacgccggc 59290
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||| ||| | ||| || | || ||| |||||| ||||| Sbjct: 31730158 gtgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttc 31730099 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 31730098 ctcacgccggc 31730088 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||||||| | ||| || || | ||| ||||||| ||| Sbjct: 31726090 gtgcatccgctgagcgccatggtgagctccagctcgtcgcggagcatctgcagcaccttc 31726031 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 31726030 ctcacgccggc 31726020
>gb|AY173074.1| Zantedeschia aethiopica glycolate oxidase (gox) mRNA, complete cds Length = 1486 Score = 46.1 bits (23), Expect = 0.11 Identities = 23/23 (100%) Strand = Plus / Minus Query: 429 gccatggtgagctcgaactcctc 451 ||||||||||||||||||||||| Sbjct: 1115 gccatggtgagctcgaactcctc 1093
>dbj|AK068638.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013156O03, full insert sequence Length = 1435 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||||||| | ||| || || | ||| ||||||| ||| Sbjct: 1103 gtgcatccgctgagcgccatggtgagctccagctcgtcgcggagcatctgcagcaccttc 1044 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 1043 ctcacgccggc 1033
>dbj|AK068129.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013131A08, full insert sequence Length = 1986 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||| ||| | ||| || | || ||| |||||| ||||| Sbjct: 1621 gtgcagccgctgagcgccatggtgatctccagctcgtctctcagcatccgcagcgcgttc 1562 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 1561 ctcacgccggc 1551
>dbj|AK060221.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-002-F07, full insert sequence Length = 1427 Score = 46.1 bits (23), Expect = 0.11 Identities = 59/71 (83%) Strand = Plus / Minus Query: 414 gtgcacccgccgagcgccatggtgagctcgaactcctcccgcatcatgcgcagcacgttc 473 ||||| |||| |||||||||||||||||| | ||| || || | ||| ||||||| ||| Sbjct: 1107 gtgcatccgctgagcgccatggtgagctccagctcgtcgcggagcatctgcagcaccttc 1048 Query: 474 cgcacgccggc 484 | ||||||||| Sbjct: 1047 ctcacgccggc 1037
>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome Length = 6021225 Score = 44.1 bits (22), Expect = 0.42 Identities = 22/22 (100%) Strand = Plus / Plus Query: 351 agcgggcgtccgaggcggtcgc 372 |||||||||||||||||||||| Sbjct: 277779 agcgggcgtccgaggcggtcgc 277800 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 345 ctcggcagcgggcgtccgag 364 |||||||||||||||||||| Sbjct: 5814716 ctcggcagcgggcgtccgag 5814697
>gb|CP000009.1| Gluconobacter oxydans 621H, complete genome Length = 2702173 Score = 42.1 bits (21), Expect = 1.7 Identities = 24/25 (96%) Strand = Plus / Minus Query: 442 cgaactcctcccgcatcatgcgcag 466 |||| |||||||||||||||||||| Sbjct: 2682575 cgaaatcctcccgcatcatgcgcag 2682551
>gb|AC125735.1| Leishmania major strain Friedlin chromosome 3, complete sequence Length = 384518 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 448 cctcccgcatcatgcgcagcacgttccg 475 ||||||||||||||||| |||| ||||| Sbjct: 284029 cctcccgcatcatgcgctgcactttccg 284056
>gb|AC133710.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0002A19, complete sequence Length = 139052 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ggtgcgaaatatggtggaaatggcgaga 117 |||||||||| |||||||||||| |||| Sbjct: 29983 ggtgcgaaatttggtggaaatggagaga 29956
>gb|AY248747.1| Xanthomonas campestris pv. vesicatoria OpgH (opgH) gene, complete cds Length = 3005 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 gatgtgttcgcgggtgatgtcgctgagc 410 |||||| ||||||||| ||||||||||| Sbjct: 1051 gatgtgctcgcgggtggtgtcgctgagc 1024
>gb|AC136491.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone OSJNBa0062E06, complete sequence Length = 158842 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ggtgcgaaatatggtggaaatggcgaga 117 |||||||||| |||||||||||| |||| Sbjct: 158442 ggtgcgaaatttggtggaaatggagaga 158415
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 gatgtgttcgcgggtgatgtcgctgagc 410 |||||| ||||||||| ||||||||||| Sbjct: 766325 gatgtgctcgcgggtggtgtcgctgagc 766298
>emb|BX897673.1| Neurospora crassa DNA linkage group III BAC clone B13M15 Length = 63598 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 42541 gtgcgttgcgttgcgttgcg 42560
>emb|BX957246.7| Zebrafish DNA sequence from clone CH211-89F7 in linkage group 5, complete sequence Length = 186135 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 64 acatggaaatacaatatggt 83 |||||||||||||||||||| Sbjct: 166707 acatggaaatacaatatggt 166688
>dbj|AP008229.1| Xanthomonas oryzae pv. oryzae MAFF 311018 DNA, complete genome Length = 4940217 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 383 gatgtgttcgcgggtgatgtcgctgagc 410 |||||| ||||||||| ||||||||||| Sbjct: 4277328 gatgtgctcgcgggtggtgtcgctgagc 4277355
>gb|AC009371.7| Drosophila melanogaster 3L BAC RP98-44K7 (Roswell Park Cancer Institute Drosophila BAC Library) complete sequence Length = 174645 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 26559 gtgcgttgcgttgcgttgcg 26540
>gb|AE011690.1| Xanthomonas axonopodis pv. citri str. 306, section 68 of 469 of the complete genome Length = 11141 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 383 gatgtgttcgcgggtgatgtcgctgagc 410 |||||| ||||||||| ||||||||||| Sbjct: 3644 gatgtgctcgcgggtggtgtcgctgagc 3617
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atgtatgataaatacagaat 33 |||||||||||||||||||| Sbjct: 22849581 atgtatgataaatacagaat 22849562
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ggtgcgaaatatggtggaaatggcgaga 117 |||||||||| |||||||||||| |||| Sbjct: 17868791 ggtgcgaaatttggtggaaatggagaga 17868764
>gb|AC005639.2|AC005639 Drosophila melanogaster, chromosome 2R, region 59E3-59F4, BAC clone BACR48M01, complete sequence Length = 188272 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 77465 gtgcgttgcgttgcgttgcg 77484
>dbj|AK110285.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-E12, full insert sequence Length = 2833 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 859 gtgcgttgcgttgcgttgcg 878
>gb|AE003523.3| Drosophila melanogaster chromosome 3L, section 62 of 83 of the complete sequence Length = 290640 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 5027 gtgcgttgcgttgcgttgcg 5008
>gb|AE003461.3| Drosophila melanogaster chromosome 2R, section 69 of 73 of the complete sequence Length = 598988 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 240 gtgcgttgcgttgcgttgcg 259 |||||||||||||||||||| Sbjct: 111005 gtgcgttgcgttgcgttgcg 111024
>gb|AE013598.1| Xanthomonas oryzae pv. oryzae KACC10331, complete genome Length = 4941439 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Plus Query: 383 gatgtgttcgcgggtgatgtcgctgagc 410 |||||| ||||||||| ||||||||||| Sbjct: 4284118 gatgtgctcgcgggtggtgtcgctgagc 4284145
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 40.1 bits (20), Expect = 6.5 Identities = 26/28 (92%) Strand = Plus / Minus Query: 90 ggtgcgaaatatggtggaaatggcgaga 117 |||||||||| |||||||||||| |||| Sbjct: 17963108 ggtgcgaaatttggtggaaatggagaga 17963081
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Minus Query: 14 atgtatgataaatacagaat 33 |||||||||||||||||||| Sbjct: 22777772 atgtatgataaatacagaat 22777753
>emb|AL935070.3|CNS08CCM Oryza sativa chromosome 12, . BAC OSJNBa0040P10 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 148705 Score = 40.1 bits (20), Expect = 6.5 Identities = 20/20 (100%) Strand = Plus / Plus Query: 14 atgtatgataaatacagaat 33 |||||||||||||||||||| Sbjct: 107263 atgtatgataaatacagaat 107282 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,650,271 Number of Sequences: 3902068 Number of extensions: 2650271 Number of successful extensions: 45364 Number of sequences better than 10.0: 45 Number of HSP's better than 10.0 without gapping: 45 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 44832 Number of HSP's gapped (non-prelim): 519 length of query: 484 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 462 effective length of database: 17,147,199,772 effective search space: 7922006294664 effective search space used: 7922006294664 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)